ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart52g04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_190147.1| Oryza sativa (japonica cultivar-group), predic... 68 3e-08
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 68 3e-08
3dbj|AP003261.3| Oryza sativa (japonica cultivar-group) genomic D... 68 3e-08
4dbj|AP003227.3| Oryza sativa (japonica cultivar-group) genomic D... 68 3e-08
5dbj|AK065053.1| Oryza sativa (japonica cultivar-group) cDNA clon... 68 3e-08
6ref|NM_011305.3| Mus musculus retinoid X receptor alpha (Rxra), ... 46 0.11
7emb|X66223.1|MMRXRAMR M.musculus mRNA for retinoid X receptor-al... 46 0.11
8dbj|AK144675.1| Mus musculus lung RCB-0558 LLC cDNA, RIKEN full-... 46 0.11
9emb|AL772166.15| Mouse DNA sequence from clone RP23-413I12 on ch... 46 0.11
10gb|M84817.1|MUSRXRA Mouse retinoid X receptor alpha (RXR-alpha) ... 46 0.11
11dbj|AK031034.1| Mus musculus adult male thymus cDNA, RIKEN full-... 44 0.42
12dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.42
13dbj|AK109655.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.42
14gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 44 0.42
15emb|AL732643.6|CNS08C9I Oryza sativa chromosome 12, . BAC OSJNBa... 44 0.42
16ref|XM_529204.1| PREDICTED: Pan troglodytes similar to B-cell re... 42 1.7
17ref|XM_521321.1| PREDICTED: Pan troglodytes similar to ATP-bindi... 42 1.7
18gb|AC151486.1| Pan troglodytes chromosome X clone PTB-029D14 map... 42 1.7
19gb|BC025358.1| Homo sapiens ATP-binding cassette, sub-family D (... 42 1.7
20gb|BC015541.1| Homo sapiens ATP-binding cassette, sub-family D (... 42 1.7
21gb|BC029169.1| Mus musculus cDNA sequence BC029169, mRNA (cDNA c... 42 1.7
22gb|U52111.3| Homo sapiens chromosome X clone Qc-7G6, QLL-F1720, ... 42 1.7
23emb|CR522870.1| Desulfotalea psychrophila LSv54 chromosome 42 1.7
24emb|Z21876.1|HSXLALDA H.sapiens X-linked ALD gene 42 1.7
25dbj|AK142932.1| Mus musculus 0 day neonate lung cDNA, RIKEN full... 42 1.7
26gb|AC099494.3| Homo sapiens chromosome 16 clone RP11-1102P22, co... 42 1.7
27ref|NM_000033.2| Homo sapiens ATP-binding cassette, sub-family D... 42 1.7
28dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome 42 1.7
29emb|Z31348.1|HSALDG1 H.sapiens ALD gene promoter and exon1 42 1.7
30ref|NM_153782.1| Mus musculus cDNA sequence BC029169 (BC029169),... 42 1.7
31emb|AL691448.24| Mouse DNA sequence from clone RP23-103A1 on chr... 42 1.7
32ref|XM_523965.1| PREDICTED: Pan troglodytes similar to hypotheti... 40 6.6
33ref|XM_469762.1| Oryza sativa (japonica cultivar-group), mRNA 40 6.6
34ref|XM_469760.1| Oryza sativa (japonica cultivar-group), mRNA 40 6.6
35gb|AY599248.1| Homo sapiens downstream of tyrosine kinase 6 (DOK... 40 6.6
36ref|NM_152721.2| Homo sapiens docking protein 6 (DOK6), mRNA 40 6.6
37gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 6.6
38gb|CP000352.1| Ralstonia metallidurans CH34, complete genome 40 6.6
39gb|AC145433.2| Pan troglodytes BAC clone RP43-43I4 from 7, compl... 40 6.6
40gb|AC092556.8| Oryza sativa chromosome 3 BAC OSJNBa0047E24 genom... 40 6.6
41ref|XM_542808.2| PREDICTED: Canis familiaris similar to forkhead... 40 6.6
42gb|AC093131.2| Papio anubis clone RP41-51G4, complete sequence 40 6.6
43gb|AC125347.2| Mus musculus BAC clone RP24-136B2 from 5, complet... 40 6.6
44gb|AC112663.9| Mus musculus chromosome 5, clone RP23-465J5, comp... 40 6.6
45gb|AC142317.1| Pan troglodytes BAC clone RP43-52L16 from 7, comp... 40 6.6
46emb|BX572594.1| Rhodopseudomonas palustris CGA009 complete genom... 40 6.6
47gb|BC096744.1| Homo sapiens docking protein 6, mRNA (cDNA clone ... 40 6.6
48gb|CP000133.1| Rhizobium etli CFN 42, complete genome 40 6.6
49gb|AC091811.7| Oryza sativa chromosome 3 BAC OSJNBa0069E14 genom... 40 6.6
50gb|AC026585.9| Homo sapiens, clone RP11-17E3, complete sequence 40 6.6
51gb|BC109666.1| Bos taurus cDNA clone MGC:134257 IMAGE:8053628, c... 40 6.6
52dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.6
53gb|AC095043.3| Homo sapiens BAC clone RP11-124A7 from 4, complet... 40 6.6
54gb|AC010002.6|AC010002 Homo sapiens chromosome 7 clone RP11-194N... 40 6.6
55gb|AC084475.1|CBRG01C7 Caenorhabditis briggsae cosmid G01C7, com... 40 6.6
56dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 40 6.6
57emb|BX004794.14| Zebrafish DNA sequence from clone DKEYP-79B10 i... 40 6.6
58dbj|AK061252.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.6
59gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, com... 40 6.6
60gb|AY609437.1| Sus scrofa clone Clu_115249.scr.msk.p1.Contig1, m... 40 6.6 
>ref|NM_190147.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1398

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 79/94 (84%)
 Strand = Plus / Plus

                                                                       
Query: 349 gaagatgaggaatacacagcgaaaaccatctattctcaacttcgatgctggatgtggatc 408
           |||||||||||| | ||| || ||| |||||  ||||||||| ||||| |||||  ||||
Sbjct: 3   gaagatgaggaacaaacaacggaaatcatctgctctcaactttgatgcaggatgccgatc 62

                                             
Query: 409 ttccttatcttttattgtaatgggcttggtggga 442
           |||||| ||||||||||||  | |||||||||||
Sbjct: 63  ttccttgtcttttattgtatggagcttggtggga 96
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 79/94 (84%)
 Strand = Plus / Plus

                                                                            
Query: 349      gaagatgaggaatacacagcgaaaaccatctattctcaacttcgatgctggatgtggatc 408
                |||||||||||| | ||| || ||| |||||  ||||||||| ||||| |||||  ||||
Sbjct: 38148443 gaagatgaggaacaaacaacggaaatcatctgctctcaactttgatgcaggatgccgatc 38148502

                                                  
Query: 409      ttccttatcttttattgtaatgggcttggtggga 442
                |||||| ||||||||||||  | |||||||||||
Sbjct: 38148503 ttccttgtcttttattgtatggagcttggtggga 38148536
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>dbj|AP003261.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0471B04
          Length = 138025

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 79/94 (84%)
 Strand = Plus / Plus

                                                                          
Query: 349    gaagatgaggaatacacagcgaaaaccatctattctcaacttcgatgctggatgtggatc 408
              |||||||||||| | ||| || ||| |||||  ||||||||| ||||| |||||  ||||
Sbjct: 116477 gaagatgaggaacaaacaacggaaatcatctgctctcaactttgatgcaggatgccgatc 116536

                                                
Query: 409    ttccttatcttttattgtaatgggcttggtggga 442
              |||||| ||||||||||||  | |||||||||||
Sbjct: 116537 ttccttgtcttttattgtatggagcttggtggga 116570
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>dbj|AP003227.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0018C10
          Length = 200183

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 79/94 (84%)
 Strand = Plus / Plus

                                                                         
Query: 349   gaagatgaggaatacacagcgaaaaccatctattctcaacttcgatgctggatgtggatc 408
             |||||||||||| | ||| || ||| |||||  ||||||||| ||||| |||||  ||||
Sbjct: 67677 gaagatgaggaacaaacaacggaaatcatctgctctcaactttgatgcaggatgccgatc 67736

                                               
Query: 409   ttccttatcttttattgtaatgggcttggtggga 442
             |||||| ||||||||||||  | |||||||||||
Sbjct: 67737 ttccttgtcttttattgtatggagcttggtggga 67770
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>dbj|AK065053.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001I24, full
           insert sequence
          Length = 1842

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 79/94 (84%)
 Strand = Plus / Plus

                                                                       
Query: 349 gaagatgaggaatacacagcgaaaaccatctattctcaacttcgatgctggatgtggatc 408
           |||||||||||| | ||| || ||| |||||  ||||||||| ||||| |||||  ||||
Sbjct: 212 gaagatgaggaacaaacaacggaaatcatctgctctcaactttgatgcaggatgccgatc 271

                                             
Query: 409 ttccttatcttttattgtaatgggcttggtggga 442
           |||||| ||||||||||||  | |||||||||||
Sbjct: 272 ttccttgtcttttattgtatggagcttggtggga 305
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>ref|NM_011305.3| Mus musculus retinoid X receptor alpha (Rxra), mRNA
          Length = 5267

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 153 cgcgctgccgccctgctgctccg 175
           |||||||||||||||||||||||
Sbjct: 180 cgcgctgccgccctgctgctccg 202
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>emb|X66223.1|MMRXRAMR M.musculus mRNA for retinoid X receptor-alpha (mRXR-alpha)
          Length = 2088

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 153 cgcgctgccgccctgctgctccg 175
           |||||||||||||||||||||||
Sbjct: 125 cgcgctgccgccctgctgctccg 147
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>dbj|AK144675.1| Mus musculus lung RCB-0558 LLC cDNA, RIKEN full-length enriched
           library, clone:G730022A05 product:retinoid X receptor
           alpha, full insert sequence
          Length = 4882

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 153 cgcgctgccgccctgctgctccg 175
           |||||||||||||||||||||||
Sbjct: 182 cgcgctgccgccctgctgctccg 204
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>emb|AL772166.15| Mouse DNA sequence from clone RP23-413I12 on chromosome 2, complete
             sequence
          Length = 184547

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 153   cgcgctgccgccctgctgctccg 175
             |||||||||||||||||||||||
Sbjct: 67422 cgcgctgccgccctgctgctccg 67444
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>gb|M84817.1|MUSRXRA Mouse retinoid X receptor alpha (RXR-alpha) mRNA, complete cds
          Length = 1883

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 153 cgcgctgccgccctgctgctccg 175
           |||||||||||||||||||||||
Sbjct: 43  cgcgctgccgccctgctgctccg 65
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>dbj|AK031034.1| Mus musculus adult male thymus cDNA, RIKEN full-length enriched
           library, clone:5832416E11 product:retinoid X receptor
           alpha, full insert sequence
          Length = 4755

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 153 cgcgctgccgccctgctgctcc 174
           ||||||||||||||||||||||
Sbjct: 49  cgcgctgccgccctgctgctcc 70
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                          
Query: 93       cctccaggcctccaccgtgctcctcc 118
                |||||||| |||||||||||||||||
Sbjct: 10211274 cctccagggctccaccgtgctcctcc 10211249
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>dbj|AK109655.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-140-F01, full
           insert sequence
          Length = 928

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 93  cctccaggcctccaccgtgctcctcc 118
           |||||||| |||||||||||||||||
Sbjct: 184 cctccagggctccaccgtgctcctcc 209
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                          
Query: 93       cctccaggcctccaccgtgctcctcc 118
                |||||||| |||||||||||||||||
Sbjct: 10211156 cctccagggctccaccgtgctcctcc 10211131
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>emb|AL732643.6|CNS08C9I Oryza sativa chromosome 12, . BAC OSJNBa0094N04 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 92382

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 93    cctccaggcctccaccgtgctcctcc 118
             |||||||| |||||||||||||||||
Sbjct: 75476 cctccagggctccaccgtgctcctcc 75451
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>ref|XM_529204.1| PREDICTED: Pan troglodytes similar to B-cell receptor-associated
           protein 31 (BCR-associated protein Bap31) (p28 Bap31)
           (CDM protein) (6C6-AG tumor-associated antigen)
           (DXS1357E) (LOC473831), mRNA
          Length = 834

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 58  ggcgtctcctcctctccaccttctc 82
           |||||||| ||||||||||||||||
Sbjct: 182 ggcgtctcttcctctccaccttctc 206
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>ref|XM_521321.1| PREDICTED: Pan troglodytes similar to ATP-binding cassette,
          sub-family D (ALD), member 1; adrenoleukodystrophy
          protein; adrenoleukodystrophy (LOC465923), mRNA
          Length = 1498

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                   
Query: 58 ggcgtctcctcctctccaccttctc 82
          |||||||| ||||||||||||||||
Sbjct: 76 ggcgtctcttcctctccaccttctc 52
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>gb|AC151486.1| Pan troglodytes chromosome X clone PTB-029D14 map human ortholog q28,
             complete sequence
          Length = 154019

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 58    ggcgtctcctcctctccaccttctc 82
             |||||||| ||||||||||||||||
Sbjct: 12045 ggcgtctcttcctctccaccttctc 12021
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>gb|BC025358.1| Homo sapiens ATP-binding cassette, sub-family D (ALD), member 1,
          mRNA (cDNA clone MGC:39449 IMAGE:4907640), complete cds
          Length = 3697

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                   
Query: 58 ggcgtctcctcctctccaccttctc 82
          |||||||| ||||||||||||||||
Sbjct: 94 ggcgtctcttcctctccaccttctc 70
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>gb|BC015541.1| Homo sapiens ATP-binding cassette, sub-family D (ALD), member 1,
          mRNA (cDNA clone MGC:9595 IMAGE:3896490), complete cds
          Length = 3643

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                   
Query: 58 ggcgtctcctcctctccaccttctc 82
          |||||||| ||||||||||||||||
Sbjct: 75 ggcgtctcttcctctccaccttctc 51
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>gb|BC029169.1| Mus musculus cDNA sequence BC029169, mRNA (cDNA clone MGC:36952
            IMAGE:4947019), complete cds
          Length = 2614

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 53   cctcaggcgtctcctcctctc 73
            |||||||||||||||||||||
Sbjct: 1289 cctcaggcgtctcctcctctc 1269
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>gb|U52111.3| Homo sapiens chromosome X clone Qc-7G6, QLL-F1720, QLL-C1335, Qc-8B7,
              Qc-11H12, Qc-7F6, QLL-E153, Qc-10E8, Qc-10B7 map q28,
              complete sequence
          Length = 247592

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 58     ggcgtctcctcctctccaccttctc 82
              |||||||| ||||||||||||||||
Sbjct: 108170 ggcgtctcttcctctccaccttctc 108146
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>emb|CR522870.1| Desulfotalea psychrophila LSv54 chromosome
          Length = 3523383

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 418     ttttattgtaatgggcttggt 438
               |||||||||||||||||||||
Sbjct: 2330704 ttttattgtaatgggcttggt 2330684
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>emb|Z21876.1|HSXLALDA H.sapiens X-linked ALD gene
          Length = 2750

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                   
Query: 58 ggcgtctcctcctctccaccttctc 82
          |||||||| ||||||||||||||||
Sbjct: 81 ggcgtctcttcctctccaccttctc 57
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>dbj|AK142932.1| Mus musculus 0 day neonate lung cDNA, RIKEN full-length enriched
            library, clone:E030006B12 product:Protein FAM20A
            precursor, full insert sequence
          Length = 3088

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 53   cctcaggcgtctcctcctctc 73
            |||||||||||||||||||||
Sbjct: 1313 cctcaggcgtctcctcctctc 1293
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>gb|AC099494.3| Homo sapiens chromosome 16 clone RP11-1102P22, complete sequence
          Length = 143557

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 65     cctcctctccaccttctcacc 85
              |||||||||||||||||||||
Sbjct: 134389 cctcctctccaccttctcacc 134409
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>ref|NM_000033.2| Homo sapiens ATP-binding cassette, sub-family D (ALD), member 1
          (ABCD1), mRNA
          Length = 3616

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                   
Query: 58 ggcgtctcctcctctccaccttctc 82
          |||||||| ||||||||||||||||
Sbjct: 81 ggcgtctcttcctctccaccttctc 57
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>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome
          Length = 4659019

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 121     agctccaccccgccgccgccc 141
               |||||||||||||||||||||
Sbjct: 2814978 agctccaccccgccgccgccc 2814998
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>emb|Z31348.1|HSALDG1 H.sapiens ALD gene promoter and exon1
          Length = 2044

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 58  ggcgtctcctcctctccaccttctc 82
           |||||||| ||||||||||||||||
Sbjct: 689 ggcgtctcttcctctccaccttctc 665
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>ref|NM_153782.1| Mus musculus cDNA sequence BC029169 (BC029169), mRNA
          Length = 2614

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 53   cctcaggcgtctcctcctctc 73
            |||||||||||||||||||||
Sbjct: 1289 cctcaggcgtctcctcctctc 1269
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>emb|AL691448.24| Mouse DNA sequence from clone RP23-103A1 on chromosome 11, complete
            sequence
          Length = 197959

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 53   cctcaggcgtctcctcctctc 73
            |||||||||||||||||||||
Sbjct: 2022 cctcaggcgtctcctcctctc 2042
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>ref|XM_523965.1| PREDICTED: Pan troglodytes similar to hypothetical protein
            (LOC468576), mRNA
          Length = 2742

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 131  cgccgccgcccgctcttccc 150
            ||||||||||||||||||||
Sbjct: 2278 cgccgccgcccgctcttccc 2259
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>ref|XM_469762.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1051

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 121 agctccaccccgccgccgcc 140
           ||||||||||||||||||||
Sbjct: 187 agctccaccccgccgccgcc 168
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>ref|XM_469760.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 575

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 121 agctccaccccgccgccgcc 140
           ||||||||||||||||||||
Sbjct: 164 agctccaccccgccgccgcc 145
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>gb|AY599248.1| Homo sapiens downstream of tyrosine kinase 6 (DOK6) mRNA, complete
           cds
          Length = 1965

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 131 cgccgccgcccgctcttccc 150
           ||||||||||||||||||||
Sbjct: 82  cgccgccgcccgctcttccc 63
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>ref|NM_152721.2| Homo sapiens docking protein 6 (DOK6), mRNA
          Length = 1965

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 131 cgccgccgcccgctcttccc 150
           ||||||||||||||||||||
Sbjct: 82  cgccgccgcccgctcttccc 63
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 121      agctccaccccgccgccgcc 140
                ||||||||||||||||||||
Sbjct: 30607795 agctccaccccgccgccgcc 30607776
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>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome
          Length = 3928089

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 301     gcggcgtcgcggaccatgcc 320
               ||||||||||||||||||||
Sbjct: 3163038 gcggcgtcgcggaccatgcc 3163019



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 155     cgctgccgccctgctgctcc 174
               ||||||||||||||||||||
Sbjct: 1854008 cgctgccgccctgctgctcc 1853989
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>gb|AC145433.2| Pan troglodytes BAC clone RP43-43I4 from 7, complete sequence
          Length = 179409

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 402   gtggatcttccttatctttt 421
             ||||||||||||||||||||
Sbjct: 81108 gtggatcttccttatctttt 81127
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>gb|AC092556.8| Oryza sativa chromosome 3 BAC OSJNBa0047E24 genomic sequence, complete
              sequence
          Length = 157970

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 121    agctccaccccgccgccgcc 140
              ||||||||||||||||||||
Sbjct: 154597 agctccaccccgccgccgcc 154616
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>ref|XM_542808.2| PREDICTED: Canis familiaris similar to forkhead box L2 (LOC485688),
           mRNA
          Length = 1749

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 123 ctccaccccgccgccgcccg 142
           ||||||||||||||||||||
Sbjct: 479 ctccaccccgccgccgcccg 498
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>gb|AC093131.2| Papio anubis clone RP41-51G4, complete sequence
          Length = 181049

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 122    gctccaccccgccgccgccc 141
              ||||||||||||||||||||
Sbjct: 124236 gctccaccccgccgccgccc 124217
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>gb|AC125347.2| Mus musculus BAC clone RP24-136B2 from 5, complete sequence
          Length = 130354

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 404   ggatcttccttatcttttat 423
             ||||||||||||||||||||
Sbjct: 88027 ggatcttccttatcttttat 88008
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>gb|AC112663.9| Mus musculus chromosome 5, clone RP23-465J5, complete sequence
          Length = 228717

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 404   ggatcttccttatcttttat 423
             ||||||||||||||||||||
Sbjct: 18590 ggatcttccttatcttttat 18571
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>gb|AC142317.1| Pan troglodytes BAC clone RP43-52L16 from 7, complete sequence
          Length = 147345

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 402    gtggatcttccttatctttt 421
              ||||||||||||||||||||
Sbjct: 104699 gtggatcttccttatctttt 104680
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>emb|BX572594.1| Rhodopseudomonas palustris CGA009 complete genome; segment 2/16
          Length = 348971

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 270    gcgcgggcgacgacggcgac 289
              ||||||||||||||||||||
Sbjct: 328180 gcgcgggcgacgacggcgac 328161
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>gb|BC096744.1| Homo sapiens docking protein 6, mRNA (cDNA clone MGC:104528
           IMAGE:5260167), complete cds
          Length = 1960

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 131 cgccgccgcccgctcttccc 150
           ||||||||||||||||||||
Sbjct: 77  cgccgccgcccgctcttccc 58
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>gb|CP000133.1| Rhizobium etli CFN 42, complete genome
          Length = 4381608

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 277     cgacgacggcgacatggtcg 296
               ||||||||||||||||||||
Sbjct: 1577727 cgacgacggcgacatggtcg 1577708
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>gb|AC091811.7| Oryza sativa chromosome 3 BAC OSJNBa0069E14 genomic sequence, complete
              sequence
          Length = 139872

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 121    agctccaccccgccgccgcc 140
              ||||||||||||||||||||
Sbjct: 139368 agctccaccccgccgccgcc 139349
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>gb|AC026585.9| Homo sapiens, clone RP11-17E3, complete sequence
          Length = 172798

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 131    cgccgccgcccgctcttccc 150
              ||||||||||||||||||||
Sbjct: 121470 cgccgccgcccgctcttccc 121451
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>gb|BC109666.1| Bos taurus cDNA clone MGC:134257 IMAGE:8053628, complete cds
          Length = 1195

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 132 gccgccgcccgctcttccca 151
           ||||||||||||||||||||
Sbjct: 109 gccgccgcccgctcttccca 128
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 121      agctccaccccgccgccgcc 140
                ||||||||||||||||||||
Sbjct: 30699217 agctccaccccgccgccgcc 30699198
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>gb|AC095043.3| Homo sapiens BAC clone RP11-124A7 from 4, complete sequence
          Length = 178037

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 54    ctcaggcgtctcctcctctc 73
             ||||||||||||||||||||
Sbjct: 35643 ctcaggcgtctcctcctctc 35662
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>gb|AC010002.6|AC010002 Homo sapiens chromosome 7 clone RP11-194N22, complete sequence
          Length = 169921

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 402    gtggatcttccttatctttt 421
              ||||||||||||||||||||
Sbjct: 121840 gtggatcttccttatctttt 121821
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>gb|AC084475.1|CBRG01C7 Caenorhabditis briggsae cosmid G01C7, complete sequence
          Length = 39419

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 141   cgctcttcccagcgcgctgc 160
             ||||||||||||||||||||
Sbjct: 29451 cgctcttcccagcgcgctgc 29432
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 252     ccgcgcgacggtggtccagcgcgg 275
               |||||||||||| |||||||||||
Sbjct: 4844087 ccgcgcgacggtcgtccagcgcgg 4844064
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>emb|BX004794.14| Zebrafish DNA sequence from clone DKEYP-79B10 in linkage group 12,
             complete sequence
          Length = 207058

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 419   tttattgtaatgggcttggt 438
             ||||||||||||||||||||
Sbjct: 27927 tttattgtaatgggcttggt 27946
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>dbj|AK061252.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-211-G03, full
           insert sequence
          Length = 1051

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 121 agctccaccccgccgccgcc 140
           ||||||||||||||||||||
Sbjct: 187 agctccaccccgccgccgcc 168
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>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence
          Length = 3809201

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 229     cggcggcaccattggcggca 248
               ||||||||||||||||||||
Sbjct: 3581482 cggcggcaccattggcggca 3581501
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>gb|AY609437.1| Sus scrofa clone Clu_115249.scr.msk.p1.Contig1, mRNA sequence
          Length = 1552

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 132 gccgccgcccgctcttccca 151
           ||||||||||||||||||||
Sbjct: 192 gccgccgcccgctcttccca 211


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,266,289
Number of Sequences: 3902068
Number of extensions: 4266289
Number of successful extensions: 89059
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 88058
Number of HSP's gapped (non-prelim): 1001
length of query: 485
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 463
effective length of database: 17,147,199,772
effective search space: 7939153494436
effective search space used: 7939153494436
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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