ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bart52g03 |
|---|---|
| Clone Library Name | barley_pub |
>RNS1_ARATH (P42813) Ribonuclease 1 precursor (EC 3.1.27.1)| Length = 230 Score = 108 bits (269), Expect = 4e-24 Identities = 51/102 (50%), Positives = 64/102 (62%), Gaps = 1/102 (0%) Frame = +3 Query: 78 EEFDFFYLVQQWPGSFCDTKKGCCFPDTGKPATDFGIHGLWPNYAECKTRGELDGALEMV 257 E+FDFFY VQQWPGS+CDT+K CC+P++GKPA DFGIHGLWPNY DG Sbjct: 28 EDFDFFYFVQQWPGSYCDTQKKCCYPNSGKPAADFGIHGLWPNYK--------DGT---- 75 Query: 258 TRRRKKCWPESCN-SERLKLWEIRDLVTELDANWPTLACKGG 380 +P +C+ S+ I DL+T + +WPTLAC G Sbjct: 76 -------YPSNCDASKPFDSSTISDLLTSMKKSWPTLACPSG 110
>RNS3_ARATH (P42815) Ribonuclease 3 precursor (EC 3.1.27.1)| Length = 222 Score = 106 bits (265), Expect = 1e-23 Identities = 47/99 (47%), Positives = 62/99 (62%), Gaps = 1/99 (1%) Frame = +3 Query: 78 EEFDFFYLVQQWPGSFCDTKKGCCFPDTGKPATDFGIHGLWPNYAECKTRGELDGALEMV 257 ++FDFFY V QWPG++CD++ CC+P TGKPA DFGIHGLWPNY KT G Sbjct: 20 QDFDFFYFVLQWPGAYCDSRHSCCYPQTGKPAADFGIHGLWPNY---KTGG--------- 67 Query: 258 TRRRKKCWPESCNSE-RLKLWEIRDLVTELDANWPTLAC 371 WP++CN + R + DL+++L WPTL+C Sbjct: 68 -------WPQNCNPDSRFDDLRVSDLMSDLQREWPTLSC 99
>RNLX_LYCES (P80196) Intracellular ribonuclease LX precursor (EC 3.1.27.1)| (RNase LX) Length = 237 Score = 106 bits (264), Expect = 2e-23 Identities = 46/99 (46%), Positives = 61/99 (61%), Gaps = 1/99 (1%) Frame = +3 Query: 78 EEFDFFYLVQQWPGSFCDTKKGCCFPDTGKPATDFGIHGLWPNYAECKTRGELDGALEMV 257 ++FDFFY VQQWP S+CDT++ CC+P TGKP DF IHGLWPNY + K Sbjct: 26 QDFDFFYFVQQWPASYCDTRRSCCYPTTGKPDEDFSIHGLWPNYKDGK------------ 73 Query: 258 TRRRKKCWPESCNSE-RLKLWEIRDLVTELDANWPTLAC 371 WP++C+ E L E DL++ ++ NWP+LAC Sbjct: 74 -------WPQNCDRESSLDESEFSDLISTMEKNWPSLAC 105
>RNLE_LYCES (P80022) Extracellular ribonuclease LE precursor (EC 3.1.27.1)| (RNase LE) Length = 230 Score = 105 bits (262), Expect = 3e-23 Identities = 49/102 (48%), Positives = 62/102 (60%), Gaps = 1/102 (0%) Frame = +3 Query: 78 EEFDFFYLVQQWPGSFCDTKKGCCFPDTGKPATDFGIHGLWPNYAECKTRGELDGALEMV 257 ++FDFFY VQQWPGS+CDTK+ CC+P TGKPA DFGIHGLWPN DG Sbjct: 27 KDFDFFYFVQQWPGSYCDTKQSCCYPTTGKPAADFGIHGLWPN--------NNDGT---- 74 Query: 258 TRRRKKCWPESCN-SERLKLWEIRDLVTELDANWPTLACKGG 380 +P +C+ + +I DL++ + NWPTLAC G Sbjct: 75 -------YPSNCDPNSPYDQSQISDLISSMQQNWPTLACPSG 109
>RNS2_ARATH (P42814) Ribonuclease 2 precursor (EC 3.1.27.1)| Length = 259 Score = 63.2 bits (152), Expect = 2e-10 Identities = 37/101 (36%), Positives = 48/101 (47%), Gaps = 4/101 (3%) Frame = +3 Query: 81 EFDFFYLVQQWPGSFCDTKKGCCFPDT---GKPA-TDFGIHGLWPNYAECKTRGELDGAL 248 EFD+F L QWPG++C + CC + G A T F IHGLWP+Y DG+ Sbjct: 31 EFDYFALSLQWPGTYCRGTRHCCSKNACCRGSDAPTQFTIHGLWPDYN--------DGS- 81 Query: 249 EMVTRRRKKCWPESCNSERLKLWEIRDLVTELDANWPTLAC 371 WP C K EI L+ L+ WP+L+C Sbjct: 82 ----------WPSCCYRSDFKEKEISTLMDGLEKYWPSLSC 112
>RNS2_ANTHI (Q38716) Ribonuclease S-2 precursor (EC 3.1.27.1) (Stylar| glycoprotein 2) (S2-RNase) Length = 235 Score = 50.8 bits (120), Expect = 8e-07 Identities = 33/98 (33%), Positives = 44/98 (44%), Gaps = 3/98 (3%) Frame = +3 Query: 81 EFDFFYLVQQWPGSFCDTKKGCCFPDTGKPATDFGIHGLWPNYAECKTRGELDGALEMVT 260 +FD+F LV QWP S+C K C P T P + F IHGLWP+ Sbjct: 32 QFDYFKLVLQWPNSYCSLKTTHC-PRTRLP-SQFTIHGLWPD------------------ 71 Query: 261 RRRKKCWP-ESCNSERLKLWEIRD--LVTELDANWPTL 365 K WP +C + +I D L+ +L +WP L Sbjct: 72 ---NKSWPLSNCRDTSADVLKITDKGLIQDLAVHWPDL 106
>RNOY_CRAGI (Q7M456) Ribonuclease Oy (EC 3.1.27.-) (RNase Oy)| Length = 213 Score = 50.4 bits (119), Expect = 1e-06 Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 1/97 (1%) Frame = +3 Query: 78 EEFDFFYLVQQWPGSFCDTKKGCCFPDTGKPATDFGIHGLWPNYAECKTRGELDGALEMV 257 +++++F QQWP + C K C PD+ +GIHGLWP+ ++ +++G Sbjct: 1 KDWNYFTFAQQWPIAVCAEHKSCFIPDS---VVGWGIHGLWPS-SDTESKG--------- 47 Query: 258 TRRRKKCWPESCN-SERLKLWEIRDLVTELDANWPTL 365 PE+CN S + + LV EL WP L Sbjct: 48 --------PENCNGSWPFDINNVMPLVPELKKYWPNL 76
>RNDI_DICDI (Q7M438) Ribonuclease DdI precursor (EC 3.1.27.1) (RNase DdI)| Length = 223 Score = 49.3 bits (116), Expect = 2e-06 Identities = 30/95 (31%), Positives = 47/95 (49%) Frame = +3 Query: 81 EFDFFYLVQQWPGSFCDTKKGCCFPDTGKPATDFGIHGLWPNYAECKTRGELDGALEMVT 260 +FDF+ VQQW S+CD++ C + + A F IHGLWP + DG+ Sbjct: 31 DFDFYLFVQQWIYSYCDSQ--TCIQNKEREA--FTIHGLWPENS--------DGS----- 73 Query: 261 RRRKKCWPESCNSERLKLWEIRDLVTELDANWPTL 365 +P C+ + I+DL +L+ +WP+L Sbjct: 74 ------YPSFCSGPSFNVNAIQDLEDQLNFDWPSL 102
>RNS3_PETHY (Q40875) Ribonuclease S-3 precursor (EC 3.1.27.1) (Stylar| glycoprotein 3) (S3-RNase) Length = 222 Score = 42.4 bits (98), Expect = 3e-04 Identities = 19/40 (47%), Positives = 23/40 (57%) Frame = +3 Query: 84 FDFFYLVQQWPGSFCDTKKGCCFPDTGKPATDFGIHGLWP 203 FD+F LV WP SFC K C + + +F IHGLWP Sbjct: 24 FDYFQLVLTWPASFCYPKNKC-----QRRSNNFTIHGLWP 58
>RNMC_MOMCH (P23540) Ribonuclease MC (EC 3.1.27.1) (RNase MC)| Length = 191 Score = 42.0 bits (97), Expect = 4e-04 Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 6/84 (7%) Frame = +3 Query: 84 FDFFYLVQQWPGSFCDTKKGCCFPDTGKPATDFGIHGLWP-----NYAECKTRGELD-GA 245 FD F+ VQQWP + C +K P +G F IHGLWP + C D Sbjct: 1 FDSFWFVQQWPPAVCSFQKSGSCPGSG--LRTFTIHGLWPQGSGTSLTNCPQGSPFDITK 58 Query: 246 LEMVTRRRKKCWPESCNSERLKLW 317 + + + WP + + W Sbjct: 59 ISHLQSQLNTLWPNVLRANNQQFW 82
>RNS4_ANTHI (Q38717) Ribonuclease S-4 precursor (EC 3.1.27.1) (Stylar| glycoprotein 4) (S4-RNase) Length = 233 Score = 41.6 bits (96), Expect = 5e-04 Identities = 28/94 (29%), Positives = 40/94 (42%), Gaps = 1/94 (1%) Frame = +3 Query: 87 DFFYLVQQWPGSFCDTKKGCCFPDTGKPATDFGIHGLWP-NYAECKTRGELDGALEMVTR 263 D+ LV QWP SFC C ++F IHGLWP NY TR Sbjct: 34 DYLKLVLQWPKSFCLINSRKC--QRNPLPSNFTIHGLWPDNY----------------TR 75 Query: 264 RRKKCWPESCNSERLKLWEIRDLVTELDANWPTL 365 + P+SC + + + D+ ++ +WP L Sbjct: 76 QA----PQSCTTNNFQRFTDTDIEQRMEESWPDL 105
>RNS4_PYRPY (Q40966) Ribonuclease S-4 precursor (EC 3.1.27.1) (S4-RNase)| Length = 228 Score = 41.6 bits (96), Expect = 5e-04 Identities = 28/101 (27%), Positives = 46/101 (45%), Gaps = 7/101 (6%) Frame = +3 Query: 84 FDFFYLVQQWPGSFCDTKKGCCFPDTGKPATDFGIHGLWPNY------AECKTRGELDGA 245 FD+F QQ+ + C++ C T K F +HGLWP+ +CKT Sbjct: 28 FDYFQFTQQYQPAVCNSNPTPCNDPTDKL---FTVHGLWPSNRNGPDPEKCKTTTMNSQK 84 Query: 246 LEMVTRRRKKCWPESCN-SERLKLWEIRDLVTELDANWPTL 365 + +T + + WP N S+ + WE R+ + +PT+ Sbjct: 85 IGNMTAQLEIIWPNVLNRSDHVGFWE-REWLKHGTCGYPTI 124
>RNS2_SOLTU (Q01796) Ribonuclease S-2 precursor (EC 3.1.27.1) (Stylar| glycoprotein 2) (S2-RNase) Length = 223 Score = 39.3 bits (90), Expect = 0.002 Identities = 18/42 (42%), Positives = 23/42 (54%) Frame = +3 Query: 81 EFDFFYLVQQWPGSFCDTKKGCCFPDTGKPATDFGIHGLWPN 206 +FD+ LV WP SFC + C P +F IHGLWP+ Sbjct: 23 DFDYMQLVLTWPRSFCYPRGFC----NRIPPNNFTIHGLWPD 60
>RNT2_HUMAN (O00584) Ribonuclease T2 precursor (EC 3.1.27.-) (Ribonuclease 6)| Length = 256 Score = 38.9 bits (89), Expect = 0.003 Identities = 27/93 (29%), Positives = 38/93 (40%) Frame = +3 Query: 81 EFDFFYLVQQWPGSFCDTKKGCCFPDTGKPATDFGIHGLWPNYAECKTRGELDGALEMVT 260 E+ +VQ WP + C+ + C P + IHGLWP+ +E R Sbjct: 33 EWKKLIMVQHWPETVCEKIQNDC----RDPPDYWTIHGLWPDKSEGCNRS---------- 78 Query: 261 RRRKKCWPESCNSERLKLWEIRDLVTELDANWP 359 WP L EI+DL+ E+ A WP Sbjct: 79 ------WP-------FNLEEIKDLLPEMRAYWP 98
>RN28_PANGI (P83618) Ribonuclease-like storage protein precursor (Root 28 kDa| major protein) Length = 238 Score = 37.7 bits (86), Expect = 0.007 Identities = 25/83 (30%), Positives = 33/83 (39%), Gaps = 7/83 (8%) Frame = +3 Query: 93 FYLVQQWPGSFCDTKKGCCFPDTGKPATDFGIHGLWPNYAECKTRGELDG------ALEM 254 F L QWP FC+ C DT F IHGL+P A+ DG ++ Sbjct: 32 FALRLQWPAGFCEVNNAC---DTKSLLNTFTIHGLYPYNAKGTPALYCDGTAFDVNSVSD 88 Query: 255 VTRRRKKCWP-ESCNSERLKLWE 320 WP N+E ++ WE Sbjct: 89 FLAEMHLAWPSHETNTEDIQFWE 111
>RNS1_PYRPY (O80322) Ribonuclease S-1 precursor (EC 3.1.27.1) (S1-RNase)| Length = 228 Score = 37.7 bits (86), Expect = 0.007 Identities = 23/94 (24%), Positives = 38/94 (40%) Frame = +3 Query: 84 FDFFYLVQQWPGSFCDTKKGCCFPDTGKPATDFGIHGLWPNYAECKTRGELDGALEMVTR 263 +D+F QQ+ + C++ C T K F +HGLWP+ Sbjct: 28 YDYFQFTQQYQPAVCNSNPTPCNDPTDKL---FTVHGLWPS------------------- 65 Query: 264 RRKKCWPESCNSERLKLWEIRDLVTELDANWPTL 365 R PE C + L +I ++ +L+ WP + Sbjct: 66 NRNGPDPEKCKTTALNSQKIGNMTAQLEIIWPNV 99
>RNS7_PYRPY (O80325) Ribonuclease S-7 precursor (EC 3.1.27.1) (S7-RNase)| Length = 226 Score = 36.6 bits (83), Expect = 0.015 Identities = 23/94 (24%), Positives = 40/94 (42%) Frame = +3 Query: 84 FDFFYLVQQWPGSFCDTKKGCCFPDTGKPATDFGIHGLWPNYAECKTRGELDGALEMVTR 263 +D+F QQ+ + C++K C P F +HGLWP+ L+G Sbjct: 28 YDYFQFTQQYQPAVCNSKPTPC---KDPPDKLFTVHGLWPS--------NLNGP------ 70 Query: 264 RRKKCWPESCNSERLKLWEIRDLVTELDANWPTL 365 PE+C + + I+++ +L WP + Sbjct: 71 -----HPENCTNATVNPHRIKNIQAQLKIIWPNV 99
>RNS6_NICAL (Q40379) Ribonuclease S-6 precursor (EC 3.1.27.1) (Stylar| glycoprotein 6) (S6-RNase) Length = 215 Score = 36.6 bits (83), Expect = 0.015 Identities = 17/41 (41%), Positives = 23/41 (56%) Frame = +3 Query: 84 FDFFYLVQQWPGSFCDTKKGCCFPDTGKPATDFGIHGLWPN 206 F++ LV QWP +FC T P ++F IHGLWP+ Sbjct: 24 FEYMQLVLQWPTAFCHTTPCKNIP------SNFTIHGLWPD 58
>RNS7_NICAL (Q40381) Ribonuclease S-7 precursor (EC 3.1.27.1) (Stylar| glycoprotein 7) (S7-RNase) Length = 218 Score = 36.6 bits (83), Expect = 0.015 Identities = 17/41 (41%), Positives = 23/41 (56%) Frame = +3 Query: 84 FDFFYLVQQWPGSFCDTKKGCCFPDTGKPATDFGIHGLWPN 206 F++ LV QWP +FC T P+ +F IHGLWP+ Sbjct: 24 FEYMQLVLQWPTAFCHTTPCKRIPN------NFTIHGLWPD 58
>RNS2_PYRPY (Q40965) Ribonuclease S-2 precursor (EC 3.1.27.1) (S2-RNase)| Length = 221 Score = 36.2 bits (82), Expect = 0.020 Identities = 25/95 (26%), Positives = 43/95 (45%) Frame = +3 Query: 84 FDFFYLVQQWPGSFCDTKKGCCFPDTGKPATDFGIHGLWPNYAECKTRGELDGALEMVTR 263 +D+F QQ+ +FC++ C P F +HGLWP+ T+ D Sbjct: 23 YDYFQFTQQYQQAFCNSNPTPC---KDPPDKLFTVHGLWPS-----TKVGRD-------- 66 Query: 264 RRKKCWPESCNSERLKLWEIRDLVTELDANWPTLA 368 PE C ++R + +I+ L +L+ WP ++ Sbjct: 67 ------PEYCKTKRYR--KIQRLEPQLEIIWPNVS 93
>RNS2_NICAL (P04007) Ribonuclease S-2 precursor (EC 3.1.27.1) (Stylar| glycoprotein 2) (S2-RNase) Length = 214 Score = 34.3 bits (77), Expect = 0.075 Identities = 16/41 (39%), Positives = 22/41 (53%) Frame = +3 Query: 84 FDFFYLVQQWPGSFCDTKKGCCFPDTGKPATDFGIHGLWPN 206 F++ LV WP +FC K + T+F IHGLWP+ Sbjct: 24 FEYMQLVLTWPITFCRIKH------CERTPTNFTIHGLWPD 58
>RNT2_MOUSE (Q9CQ01) Ribonuclease T2 precursor (EC 3.1.27.-) (Ribonuclease 6)| Length = 259 Score = 33.1 bits (74), Expect = 0.17 Identities = 26/95 (27%), Positives = 36/95 (37%), Gaps = 2/95 (2%) Frame = +3 Query: 81 EFDFFYLVQQWPGSFCDTKKGCCFPDTGKPATDFG-IHGLWPNYAECKTRGELDGALEMV 257 E+ L Q WP + C C + + D+ IHGLWP+ A Sbjct: 38 EWKKLILTQHWPPTVCKEVNSC------QDSLDYWTIHGLWPDRA--------------- 76 Query: 258 TRRRKKCWPESCN-SERLKLWEIRDLVTELDANWP 359 E CN S L EI+DL+ ++ WP Sbjct: 77 ---------EDCNQSWHFNLDEIKDLLRDMKIYWP 102
>RNI_AERHY (Q07465) Ribonuclease precursor (EC 3.1.27.-)| Length = 215 Score = 33.1 bits (74), Expect = 0.17 Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 5/62 (8%) Frame = +3 Query: 81 EFDFFYLVQQWPGSFCDTKKGCCFPDTGKPATDFGIHGLWPNY-----AECKTRGELDGA 245 EFD++ + W C K D F +HGLWP Y + C TR LD A Sbjct: 28 EFDYYAMALSWSPEHCAIKPAD--RDQCSRQLGFVLHGLWPQYQRGYPSSC-TRERLDPA 84 Query: 246 LE 251 +E Sbjct: 85 ME 86
>RNS11_NICAL (Q7SID5) Ribonuclease S-F11 (EC 3.1.27.1) (Stylar glycoprotein F11)| (SF11-RNase) Length = 196 Score = 32.0 bits (71), Expect = 0.37 Identities = 19/49 (38%), Positives = 24/49 (48%) Frame = +3 Query: 81 EFDFFYLVQQWPGSFCDTKKGCCFPDTGKPATDFGIHGLWPNYAECKTR 227 +F++ LV WP SFC C +F IHGLWP+ KTR Sbjct: 1 DFEYLQLVLTWPASFCYANH-C----ERIAPNNFTIHGLWPD--NVKTR 42
>RNS3_PYRPY (O80323) Ribonuclease S-3 precursor (EC 3.1.27.1) (S3-RNase)| Length = 222 Score = 31.6 bits (70), Expect = 0.49 Identities = 13/41 (31%), Positives = 22/41 (53%) Frame = +3 Query: 84 FDFFYLVQQWPGSFCDTKKGCCFPDTGKPATDFGIHGLWPN 206 +D+F QQ+ + C++ + C P F +HGLWP+ Sbjct: 23 YDYFQFTQQYQLAVCNSNRTLC---KDPPDKLFTVHGLWPS 60
>RNS5_PYRPY (P93460) Ribonuclease S-5 precursor (EC 3.1.27.1) (S5-RNase)| Length = 227 Score = 30.8 bits (68), Expect = 0.83 Identities = 13/41 (31%), Positives = 22/41 (53%) Frame = +3 Query: 84 FDFFYLVQQWPGSFCDTKKGCCFPDTGKPATDFGIHGLWPN 206 +D+F QQ+ + C++ + C P F +HGLWP+ Sbjct: 28 YDYFQFTQQYQLAVCNSNRTPC---KDPPDKLFTVHGLWPS 65
>RNPB_PHYPO (P81477) Ribonuclease Phyb (EC 3.1.27.-) (RNase Phyb)| Length = 180 Score = 30.4 bits (67), Expect = 1.1 Identities = 24/93 (25%), Positives = 33/93 (35%) Frame = +3 Query: 84 FDFFYLVQQWPGSFCDTKKGCCFPDTGKPATDFGIHGLWPNYAECKTRGELDGALEMVTR 263 FDFF V +W S F IHGLWP + DG+ Sbjct: 5 FDFFIFVTEWNASISTEY--------------FTIHGLWPENS--------DGS------ 36 Query: 264 RRKKCWPESCNSERLKLWEIRDLVTELDANWPT 362 +P C+S + I DL+ + WP+ Sbjct: 37 -----YPSGCSSGKFSTSTISDLIDTMQV-WPS 63
>CAPP_RALSO (Q8XWW2) Phosphoenolpyruvate carboxylase (EC 4.1.1.31) (PEPCase)| (PEPC) Length = 985 Score = 29.3 bits (64), Expect = 2.4 Identities = 11/18 (61%), Positives = 15/18 (83%) Frame = +2 Query: 5 LTGQDEARRALGPAPAFS 58 LTG+D R A+GPAPA++ Sbjct: 399 LTGEDAGRHAVGPAPAYT 416
>JHD1B_MOUSE (Q6P1G2) JmjC domain-containing histone demethylation protein 1B| (EC 1.14.11.-) (F-box/LRR-repeat protein 10) (F-box and leucine-rich repeat protein 10) (F-box protein FBL10) Length = 1309 Score = 29.3 bits (64), Expect = 2.4 Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 2/75 (2%) Frame = +3 Query: 159 TGKPATDFGIHGLWPNYAECKTRGELDGALEMVTR--RRKKCWPESCNSERLKLWEIRDL 332 TG PAT+ + W + E + +G L +E + KKC PE + L ++++ Sbjct: 468 TGSPATE--VSTKWTHLTEFELKG-LKALVEKLESLPENKKCVPEGIEDPQALLEGVKNV 524 Query: 333 VTELDANWPTLACKG 377 + E + PTLA G Sbjct: 525 LKEHVDDDPTLAITG 539
>JHD1B_HUMAN (Q8NHM5) JmjC domain-containing histone demethylation protein 1B| (EC 1.14.11.-) (F-box/LRR-repeat protein 10) (F-box and leucine-rich repeat protein 10) (F-box protein FBL10) (Protein JEMMA) (Jumonji containing domain EMSY-interactor methyltr Length = 1336 Score = 28.9 bits (63), Expect = 3.2 Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 2/75 (2%) Frame = +3 Query: 159 TGKPATDFGIHGLWPNYAECKTRGELDGALEMVTR--RRKKCWPESCNSERLKLWEIRDL 332 TG PAT+ + W + E + +G L +E + KKC PE + L ++++ Sbjct: 495 TGSPATE--VSAKWTHLTEFELKG-LKALVEKLESLPENKKCVPEGIEDPQALLEGVKNV 551 Query: 333 VTELDANWPTLACKG 377 + E + P+LA G Sbjct: 552 LKEHADDDPSLAITG 566
>RNS6_PYRPY (O80324) Ribonuclease S-6 precursor (EC 3.1.27.1) (S6-RNase)| Length = 229 Score = 28.9 bits (63), Expect = 3.2 Identities = 21/94 (22%), Positives = 38/94 (40%) Frame = +3 Query: 84 FDFFYLVQQWPGSFCDTKKGCCFPDTGKPATDFGIHGLWPNYAECKTRGELDGALEMVTR 263 +++F QQ+ + C++ C P F +HGLWP+ G+ Sbjct: 28 YNYFQFTQQYQPAVCNSNPTPC---KDPPDKLFTVHGLWPS----NDVGD---------- 70 Query: 264 RRKKCWPESCNSERLKLWEIRDLVTELDANWPTL 365 P C ++ +K +I +L +L WP + Sbjct: 71 -----DPIYCKNKTIKSQQIGNLTAQLIIIWPNV 99
>RDRP_CARMV (P04518) Probable RNA-directed RNA polymerase (EC 2.7.7.48)| Length = 867 Score = 28.5 bits (62), Expect = 4.1 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%) Frame = +3 Query: 243 ALEMVTRRRKKCWPESCNS-ERLKLWEIRDLVTELDANWPTLACKGG 380 A+ + R+ CW N +R + WE+ +V D+N P KGG Sbjct: 201 AMASILNRKGWCWRLMVNPLDRARWWEMWCVVNGFDSNKPVTFPKGG 247
>MAP1A_RAT (P34926) Microtubule-associated protein 1A (MAP 1A) [Contains: MAP1| light chain LC2] Length = 2774 Score = 28.1 bits (61), Expect = 5.4 Identities = 14/50 (28%), Positives = 21/50 (42%) Frame = +3 Query: 222 TRGELDGALEMVTRRRKKCWPESCNSERLKLWEIRDLVTELDANWPTLAC 371 TRGE G + W + ++ W RD+ + DA W L+C Sbjct: 1624 TRGEPVGG----QKEPVPAWEGKSPEQEVRYWRDRDITLQQDAYWRELSC 1669
>DNAK_HALSA (Q9HRY2) Chaperone protein dnaK (Heat shock protein 70) (Heat shock| 70 kDa protein) (HSP70) Length = 629 Score = 28.1 bits (61), Expect = 5.4 Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 1/57 (1%) Frame = +2 Query: 131 HEEGVLLPGHRQAGDGLRHP-RALAQLXXXXXXXXXXXXLGDGDQAEEEVLAGVLQQ 298 H++G LL G +++P + +A + LGD + EE+ A +LQ+ Sbjct: 44 HDDGELLVGKPAKNQAVQNPDQTIASIKRHMGEEDYTVALGDDEYTPEEISARILQK 100
>DAPA_CHLAB (Q5L5G7) Dihydrodipicolinate synthase (EC 4.2.1.52) (DHDPS)| Length = 288 Score = 28.1 bits (61), Expect = 5.4 Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 5/81 (6%) Frame = +3 Query: 90 FFYLVQQWPGSFCDTKKGCCFPDTGKPATDF----GIHGLWPNYAECKTRGELDGALEMV 257 FFY ++ GS K C + + ++DF G GLWP EC RG L L + Sbjct: 152 FFYGLKDSGGSI----KHC--QEYAQMSSDFVLYCGDDGLWPQMYECGARG-LISVLSNI 204 Query: 258 TRRRKKCWPESCNSE-RLKLW 317 + + W E + + R LW Sbjct: 205 WPKEAREWVEDPHHQYRADLW 225
>ZFP37_RAT (O88553) Zinc finger protein 37 (Zfp-37)| Length = 601 Score = 28.1 bits (61), Expect = 5.4 Identities = 11/25 (44%), Positives = 15/25 (60%) Frame = -3 Query: 198 RARGCRSPSPACRCPGSSTPSSCHR 124 R CRSPS + + PGS P C++ Sbjct: 237 RKSPCRSPSKSDKAPGSGKPYECNQ 261
>SEM4B_MOUSE (Q62179) Semaphorin-4B precursor (Semaphorin C) (Sema C)| Length = 823 Score = 27.7 bits (60), Expect = 7.0 Identities = 16/43 (37%), Positives = 22/43 (51%) Frame = -1 Query: 191 VDAEVRRRLAGVREAAPLLRVTEGPWPLLHKVEEIEFLPRGDG 63 +D +VR RL ++ A RV P LH ++ FL GDG Sbjct: 416 MDGQVRSRLLLLQPRARYQRVAVHRVPGLHSTYDVLFLGTGDG 458
>CXX1_HUMAN (O15255) CAAX box protein 1 (Cerebral protein 5)| Length = 209 Score = 27.7 bits (60), Expect = 7.0 Identities = 11/23 (47%), Positives = 12/23 (52%) Frame = -3 Query: 192 RGCRSPSPACRCPGSSTPSSCHR 124 R C P AC C +S P SC R Sbjct: 53 RSCSLPRSACLCSRNSAPGSCCR 75
>UL50_HCMVA (P16791) Protein UL50 (HFLF4 protein)| Length = 397 Score = 27.7 bits (60), Expect = 7.0 Identities = 15/38 (39%), Positives = 20/38 (52%) Frame = +2 Query: 248 GDGDQAEEEVLAGVLQQRAPQALGNQGPGDGAGRQLAD 361 GD D+ EEE+LA + +A A Q G A R L + Sbjct: 270 GDADEEEEELLALAGEGKAAAAAAGQDVGGSARRPLEE 307
>SF3B1_SCHPO (Q10178) U2 snRNP component prp10| Length = 1188 Score = 27.7 bits (60), Expect = 7.0 Identities = 16/54 (29%), Positives = 27/54 (50%) Frame = -1 Query: 188 DAEVRRRLAGVREAAPLLRVTEGPWPLLHKVEEIEFLPRGDGDERKQEQGREHD 27 D + +R V ++ L+R E P LL++ + + P + +KQ Q RE D Sbjct: 75 DEDDYKRTNDVNDSYRLVRQYEAPKELLNEYADESYDPMQERQSKKQIQDRESD 128
>GLXK_BACSU (P42100) Glycerate kinase (EC 2.7.1.31)| Length = 382 Score = 27.3 bits (59), Expect = 9.2 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 4/48 (8%) Frame = +2 Query: 245 LGDGDQAEEEVLAGVLQQRAPQALGNQG----PGDGAGRQLADAGVQG 376 +G G A + AG++Q + L N G PG GA QLA V G Sbjct: 131 IGIGGSATNDGGAGMIQALGGRLLDNSGSEIGPGGGALSQLASIDVSG 178
>GSCR1_HUMAN (Q9NZM4) Glioma tumor suppressor candidate region gene 1 protein| Length = 1509 Score = 27.3 bits (59), Expect = 9.2 Identities = 12/20 (60%), Positives = 14/20 (70%) Frame = -2 Query: 241 PSSSPRVLHSA*LGQSPWMP 182 PSSSP + H A LG SP +P Sbjct: 722 PSSSPSLPHQAPLGDSPHLP 741
>MAP4_MOUSE (P27546) Microtubule-associated protein 4 (MAP 4)| Length = 1125 Score = 27.3 bits (59), Expect = 9.2 Identities = 15/49 (30%), Positives = 23/49 (46%) Frame = -1 Query: 200 PEPVDAEVRRRLAGVREAAPLLRVTEGPWPLLHKVEEIEFLPRGDGDER 54 P ++ E++R EA P + VE+ EF+P DGDE+ Sbjct: 14 PPEIEGEIKRDFMAALEAEPYDDIVG------ETVEKTEFIPLLDGDEK 56
>Y1133_METJA (Q58533) Hypothetical protein MJ1133| Length = 421 Score = 27.3 bits (59), Expect = 9.2 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 3/40 (7%) Frame = -1 Query: 173 RRLAGVREAAPLLR---VTEGPWPLLHKVEEIEFLPRGDG 63 R L GVR P ++ +TEG LH V +IE GDG Sbjct: 288 RILKGVRNTVPTVKNIVLTEGGCCWLHAVVQIEKRTEGDG 327
>RNT2_PIG (Q7M329) Ribonuclease T2 (EC 3.1.27.-)| Length = 200 Score = 27.3 bits (59), Expect = 9.2 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%) Frame = +3 Query: 81 EFDFFYLVQQWPGSFCDTKKGCCFPDTGKPATDFGIHGLWPNYA-EC 218 E+ +V WP + C+ K + P + IHGLWP+ + EC Sbjct: 2 EWKKLIMVHHWPMTVCNEK------NCEHPPDYWTIHGLWPDKSGEC 42 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 43,636,229 Number of Sequences: 219361 Number of extensions: 796565 Number of successful extensions: 2830 Number of sequences better than 10.0: 45 Number of HSP's better than 10.0 without gapping: 2690 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2800 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 1396778976 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
