ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart52f12 |
|---|---|
| Clone Library Name | barley_pub |
>CYSKP_ARATH (P47999) Cysteine synthase, chloroplast precursor (EC 2.5.1.47)| (O-acetylserine sulfhydrylase) (O-acetylserine (Thiol)-lyase) (CSase B) (CS-B) (OAS-TL B) (AtCS-B) (cpACS1) (At.OAS.7-4) Length = 392 Score = 43.9 bits (102), Expect = 1e-04 Identities = 20/30 (66%), Positives = 23/30 (76%) Frame = +1 Query: 244 LNIRDTAAHLIGRTPLVYLNKVTEGCGARV 333 LNI D AA LIG+TP+VYLN V +GC A V Sbjct: 73 LNIADNAAQLIGKTPMVYLNNVVKGCVASV 102
>CYSKM_ARATH (Q43725) Cysteine synthase, mitochondrial precursor (EC 2.5.1.47)| (O-acetylserine sulfhydrylase) (O-acetylserine (Thiol)-lyase) (CSase C) (CS-C) (OAS-TL C) (AtCS-C) Length = 430 Score = 42.0 bits (97), Expect = 4e-04 Identities = 17/33 (51%), Positives = 23/33 (69%) Frame = +1 Query: 235 PGVLNIRDTAAHLIGRTPLVYLNKVTEGCGARV 333 P LNI D + LIG+TP+VYLN + +GC A + Sbjct: 108 PDGLNIADNVSQLIGKTPMVYLNSIAKGCVANI 140
>CYSK4_ARATH (O22682) Probable cysteine synthase, chloroplast precursor (EC| 2.5.1.47) (O-acetylserine sulfhydrylase) (O-acetylserine (Thiol)-lyase) (CSase) (OAS-TL) (CS26) Length = 404 Score = 40.8 bits (94), Expect = 8e-04 Identities = 18/46 (39%), Positives = 27/46 (58%) Frame = +1 Query: 196 PFSTLXXXXXXEDPGVLNIRDTAAHLIGRTPLVYLNKVTEGCGARV 333 P +T+ + +NI + LIG TP+VYLN+VT+GC A + Sbjct: 81 PVTTVAEEQHIAESETVNIAEDVTQLIGSTPMVYLNRVTDGCLADI 126
>CYSK_WHEAT (P38076) Cysteine synthase (EC 2.5.1.47) (O-acetylserine| sulfhydrylase) (O-acetylserine (Thiol)-lyase) (CSase A) (OAS-TL A) Length = 325 Score = 38.9 bits (89), Expect = 0.003 Identities = 18/28 (64%), Positives = 19/28 (67%) Frame = +1 Query: 250 IRDTAAHLIGRTPLVYLNKVTEGCGARV 333 I LIG TPLVYLNKVT+GC RV Sbjct: 9 IAKDVTELIGNTPLVYLNKVTDGCVGRV 36
>CYSK2_BRAJU (O23735) Cysteine synthase (EC 2.5.1.47) (O-acetylserine| sulfhydrylase) (O-acetylserine (Thiol)-lyase) (CSase) (OAS-TL) (OAS-TL6) Length = 324 Score = 37.7 bits (86), Expect = 0.007 Identities = 17/30 (56%), Positives = 19/30 (63%) Frame = +1 Query: 244 LNIRDTAAHLIGRTPLVYLNKVTEGCGARV 333 + I + LIG TPLVYLN V EGC RV Sbjct: 5 IGIANDVTELIGNTPLVYLNSVAEGCVGRV 34
>CYSK_MAIZE (P80608) Cysteine synthase (EC 2.5.1.47) (O-acetylserine| sulfhydrylase) (O-acetylserine (Thiol)-lyase) (CSase) (OAS-TL) Length = 325 Score = 37.7 bits (86), Expect = 0.007 Identities = 17/28 (60%), Positives = 19/28 (67%) Frame = +1 Query: 247 NIRDTAAHLIGRTPLVYLNKVTEGCGAR 330 +I LIG TPLVYLNKVT+GC R Sbjct: 7 SIAKDVTELIGNTPLVYLNKVTDGCVGR 34
>CYSK1_ORYSA (Q9XEA6) Cysteine synthase (EC 2.5.1.47) (O-acetylserine| sulfhydrylase) (O-acetylserine (Thiol)-lyase) (CSase) (OAS-TL) Length = 321 Score = 37.7 bits (86), Expect = 0.007 Identities = 17/28 (60%), Positives = 19/28 (67%) Frame = +1 Query: 250 IRDTAAHLIGRTPLVYLNKVTEGCGARV 333 I LIG TPLVYLN+VT+GC RV Sbjct: 5 IAKDVTELIGNTPLVYLNRVTDGCVGRV 32
>CYSK_SOLTU (O81154) Cysteine synthase (EC 2.5.1.47) (O-acetylserine| sulfhydrylase) (O-acetylserine (Thiol)-lyase) (CSase A) (CS-A) (OAS-TL A) Length = 325 Score = 37.4 bits (85), Expect = 0.009 Identities = 17/30 (56%), Positives = 19/30 (63%) Frame = +1 Query: 244 LNIRDTAAHLIGRTPLVYLNKVTEGCGARV 333 + I LIG TPLVYLN V +GC ARV Sbjct: 6 IGIAKDVTELIGNTPLVYLNNVVDGCVARV 35
>CYSK_CITLA (Q43317) Cysteine synthase (EC 2.5.1.47) (Beta-pyrazolylalanine| synthase) (Beta-PA/CSase) (EC 2.5.1.51) (L-mimosine synthase) (EC 2.5.1.52) (O-acetylserine sulfhydrylase) (O-acetylserine (Thiol)-lyase) (CSase) (OAS-TL) Length = 325 Score = 37.4 bits (85), Expect = 0.009 Identities = 17/28 (60%), Positives = 19/28 (67%) Frame = +1 Query: 250 IRDTAAHLIGRTPLVYLNKVTEGCGARV 333 I LIG TPLVYLN+V +GC ARV Sbjct: 8 IAKDVTELIGNTPLVYLNRVVDGCVARV 35
>CYSKP_SOLTU (O81155) Cysteine synthase, chloroplast precursor (EC 2.5.1.47)| (O-acetylserine sulfhydrylase) (O-acetylserine (Thiol)-lyase) (CSase B) (CS-B) (OAS-TL B) Length = 386 Score = 37.4 bits (85), Expect = 0.009 Identities = 15/30 (50%), Positives = 20/30 (66%) Frame = +1 Query: 244 LNIRDTAAHLIGRTPLVYLNKVTEGCGARV 333 LNI + LIG TP+VYLN + +GC A + Sbjct: 67 LNIAEDVTQLIGNTPMVYLNTIAKGCVANI 96
>CYSKP_CAPAN (P31300) Cysteine synthase, chloroplast precursor (EC 2.5.1.47)| (O-acetylserine sulfhydrylase) (O-acetylserine (Thiol)-lyase) (CSase B) (CS-B) (OAS-TL B) Length = 374 Score = 37.4 bits (85), Expect = 0.009 Identities = 15/30 (50%), Positives = 20/30 (66%) Frame = +1 Query: 244 LNIRDTAAHLIGRTPLVYLNKVTEGCGARV 333 LNI + LIG TP+VYLN + +GC A + Sbjct: 65 LNIAEDVTQLIGNTPMVYLNTIVKGCVANI 94
>CYSK_SPIOL (Q00834) Cysteine synthase (EC 2.5.1.47) (O-acetylserine| sulfhydrylase) (O-acetylserine (Thiol)-lyase) (CSase A) (OAS-TL A) Length = 325 Score = 37.0 bits (84), Expect = 0.012 Identities = 17/28 (60%), Positives = 19/28 (67%) Frame = +1 Query: 250 IRDTAAHLIGRTPLVYLNKVTEGCGARV 333 I LIG+TPLVYLN V +GC ARV Sbjct: 8 IAKDVTELIGKTPLVYLNTVADGCVARV 35
>CYSK2_ORYSA (Q9XEA8) Cysteine synthase (EC 2.5.1.47) (O-acetylserine| sulfhydrylase) (O-acetylserine (Thiol)-lyase) (CSase) (OAS-TL) Length = 325 Score = 37.0 bits (84), Expect = 0.012 Identities = 16/29 (55%), Positives = 20/29 (68%) Frame = +1 Query: 247 NIRDTAAHLIGRTPLVYLNKVTEGCGARV 333 +I LIG TPLVYLNKV +GC A++ Sbjct: 7 SIASDVTALIGNTPLVYLNKVVDGCEAQI 35
>CYSK1_BRAJU (O23733) Cysteine synthase (EC 2.5.1.47) (O-acetylserine| sulfhydrylase) (O-acetylserine (Thiol)-lyase) (CSase) (OAS-TL) (OAS-TL4) Length = 322 Score = 36.2 bits (82), Expect = 0.021 Identities = 17/28 (60%), Positives = 17/28 (60%) Frame = +1 Query: 250 IRDTAAHLIGRTPLVYLNKVTEGCGARV 333 I LIG TPLVYLN V EGC RV Sbjct: 5 IAKDVTELIGNTPLVYLNNVAEGCVGRV 32
>CYSK1_ARATH (P47998) Cysteine synthase (EC 2.5.1.47) (O-acetylserine| sulfhydrylase) (O-acetylserine (Thiol)-lyase) (CSase A) (CS-A) (OAS-TL A) (Cys-3A) (At.OAS.5-8) Length = 322 Score = 36.2 bits (82), Expect = 0.021 Identities = 17/28 (60%), Positives = 17/28 (60%) Frame = +1 Query: 250 IRDTAAHLIGRTPLVYLNKVTEGCGARV 333 I LIG TPLVYLN V EGC RV Sbjct: 5 IAKDVTELIGNTPLVYLNNVAEGCVGRV 32
>CYSKP_SPIOL (P32260) Cysteine synthase, chloroplast precursor (EC 2.5.1.47)| (O-acetylserine sulfhydrylase) (O-acetylserine (Thiol)-lyase) (CSase B) (CS-B) (OAS-TL B) Length = 383 Score = 35.8 bits (81), Expect = 0.027 Identities = 15/30 (50%), Positives = 22/30 (73%) Frame = +1 Query: 244 LNIRDTAAHLIGRTPLVYLNKVTEGCGARV 333 LNI + + LIG+TP+VYLN V++G A + Sbjct: 65 LNIAEDVSQLIGKTPMVYLNNVSKGSVANI 94
>CYSK_SYNY3 (P73410) Cysteine synthase (EC 2.5.1.47) (O-acetylserine| sulfhydrylase) (O-acetylserine (Thiol)-lyase) (CSase) Length = 312 Score = 34.3 bits (77), Expect = 0.079 Identities = 16/32 (50%), Positives = 21/32 (65%), Gaps = 2/32 (6%) Frame = +1 Query: 244 LNIRDTAAHLIGRTPLVYLNKV--TEGCGARV 333 + I LIGRTPLV LN++ EGCGA++ Sbjct: 1 MKIASNITELIGRTPLVRLNRIPLLEGCGAKI 32
>CYSK_MYCTU (P0A534) Cysteine synthase A (EC 2.5.1.47) (O-acetylserine| sulfhydrylase A) (O-acetylserine (Thiol)-lyase A) (CSase A) Length = 310 Score = 30.8 bits (68), Expect = 0.88 Identities = 14/30 (46%), Positives = 20/30 (66%) Frame = +1 Query: 244 LNIRDTAAHLIGRTPLVYLNKVTEGCGARV 333 ++I + LIGRTPLV L +VT+G A + Sbjct: 1 MSIAEDITQLIGRTPLVRLRRVTDGAVADI 30
>CYSK_MYCBO (P0A535) Cysteine synthase A (EC 2.5.1.47) (O-acetylserine| sulfhydrylase A) (O-acetylserine (Thiol)-lyase A) (CSase A) Length = 310 Score = 30.8 bits (68), Expect = 0.88 Identities = 14/30 (46%), Positives = 20/30 (66%) Frame = +1 Query: 244 LNIRDTAAHLIGRTPLVYLNKVTEGCGARV 333 ++I + LIGRTPLV L +VT+G A + Sbjct: 1 MSIAEDITQLIGRTPLVRLRRVTDGAVADI 30
>CYSK_MYCLE (O32978) Cysteine synthase A (EC 2.5.1.47) (O-acetylserine| sulfhydrylase A) (O-acetylserine (Thiol)-lyase A) (CSase A) Length = 310 Score = 30.0 bits (66), Expect = 1.5 Identities = 14/30 (46%), Positives = 19/30 (63%) Frame = +1 Query: 244 LNIRDTAAHLIGRTPLVYLNKVTEGCGARV 333 ++I + L+G TPLV L +VTEG A V Sbjct: 1 MSIAEDVTQLVGNTPLVRLRRVTEGALADV 30
>CAPP_RALSO (Q8XWW2) Phosphoenolpyruvate carboxylase (EC 4.1.1.31) (PEPCase)| (PEPC) Length = 985 Score = 28.5 bits (62), Expect = 4.3 Identities = 11/17 (64%), Positives = 13/17 (76%) Frame = -2 Query: 331 PGRRTPPSPCSGTPAAS 281 P R+TPP+P S TPA S Sbjct: 15 PARKTPPAPASQTPAPS 31
>PO3F3_RAT (Q63262) POU domain, class 3, transcription factor 3| (Brain-specific homeobox/POU domain protein 1) (Brain-1) (Brn-1 protein) Length = 497 Score = 28.5 bits (62), Expect = 4.3 Identities = 11/23 (47%), Positives = 11/23 (47%) Frame = +3 Query: 249 HQGHRRPPHRADAAGVPEQGDGG 317 H H PPH A G P G GG Sbjct: 275 HHAHPHPPHPHHAQGPPHHGGGG 297
>PO3F3_MOUSE (P31361) POU domain, class 3, transcription factor 3| (Brain-specific homeobox/POU domain protein 1) (Brain-1) (Brn-1 protein) Length = 495 Score = 28.5 bits (62), Expect = 4.3 Identities = 11/23 (47%), Positives = 11/23 (47%) Frame = +3 Query: 249 HQGHRRPPHRADAAGVPEQGDGG 317 H H PPH A G P G GG Sbjct: 273 HHAHPHPPHPHHAQGPPHHGGGG 295
>CAP2_RAT (P52481) Adenylyl cyclase-associated protein 2 (CAP 2)| Length = 477 Score = 28.1 bits (61), Expect = 5.7 Identities = 12/27 (44%), Positives = 18/27 (66%) Frame = +1 Query: 241 VLNIRDTAAHLIGRTPLVYLNKVTEGC 321 V+N +D ++GR P + +NK TEGC Sbjct: 394 VINSKDIQIQVMGRVPTISINK-TEGC 419
>CAP2_MOUSE (Q9CYT6) Adenylyl cyclase-associated protein 2 (CAP 2)| Length = 476 Score = 28.1 bits (61), Expect = 5.7 Identities = 12/27 (44%), Positives = 18/27 (66%) Frame = +1 Query: 241 VLNIRDTAAHLIGRTPLVYLNKVTEGC 321 V+N +D ++GR P + +NK TEGC Sbjct: 393 VINSKDIQIQVMGRVPTISINK-TEGC 418
>SC6A8_RAT (P28570) Sodium- and chloride-dependent creatine transporter 1| (CT1) (Creatine transporter 1) (CHOT1) (Solute carrier family 6 member 8) Length = 635 Score = 27.7 bits (60), Expect = 7.4 Identities = 9/15 (60%), Positives = 11/15 (73%) Frame = -1 Query: 62 LRCWMVVYVCQWCGV 18 L CW++VY C W GV Sbjct: 240 LACWVLVYFCVWKGV 254
>SC6A8_RABIT (P31661) Sodium- and chloride-dependent creatine transporter 1| (CT1) (Creatine transporter 1) (Solute carrier family 6 member 8) Length = 635 Score = 27.7 bits (60), Expect = 7.4 Identities = 9/15 (60%), Positives = 11/15 (73%) Frame = -1 Query: 62 LRCWMVVYVCQWCGV 18 L CW++VY C W GV Sbjct: 240 LACWVLVYFCVWKGV 254
>SC6A8_HUMAN (P48029) Sodium- and chloride-dependent creatine transporter 1| (CT1) (Creatine transporter 1) (Solute carrier family 6 member 8) Length = 635 Score = 27.7 bits (60), Expect = 7.4 Identities = 9/15 (60%), Positives = 11/15 (73%) Frame = -1 Query: 62 LRCWMVVYVCQWCGV 18 L CW++VY C W GV Sbjct: 240 LACWVLVYFCVWKGV 254
>SC6A8_BOVIN (O18875) Sodium- and chloride-dependent creatine transporter 1| (CT1) (Creatine transporter 1) (Solute carrier family 6 member 8) Length = 635 Score = 27.7 bits (60), Expect = 7.4 Identities = 9/15 (60%), Positives = 11/15 (73%) Frame = -1 Query: 62 LRCWMVVYVCQWCGV 18 L CW++VY C W GV Sbjct: 240 LTCWVLVYFCVWKGV 254
>CAP2_HUMAN (P40123) Adenylyl cyclase-associated protein 2 (CAP 2)| Length = 477 Score = 27.7 bits (60), Expect = 7.4 Identities = 12/27 (44%), Positives = 18/27 (66%) Frame = +1 Query: 241 VLNIRDTAAHLIGRTPLVYLNKVTEGC 321 V+N +D ++GR P + +NK TEGC Sbjct: 394 VINSQDIQIQVMGRVPTISINK-TEGC 419
>END4_THET2 (Q72KH8) Probable endonuclease 4 (EC 3.1.21.2) (Endonuclease IV)| (Endodeoxyribonuclease IV) Length = 270 Score = 27.7 bits (60), Expect = 7.4 Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 1/36 (2%) Frame = +1 Query: 229 EDP-GVLNIRDTAAHLIGRTPLVYLNKVTEGCGARV 333 EDP GVL+ D A L R P+V+LN G G+RV Sbjct: 182 EDPLGVLDALDRAVGL-ERVPVVHLNDSVGGLGSRV 216
>SC6A8_MOUSE (Q8VBW1) Sodium- and chloride-dependent creatine transporter 1| (CT1) (Creatine transporter 1) (Solute carrier family 6 member 8) Length = 640 Score = 27.7 bits (60), Expect = 7.4 Identities = 9/15 (60%), Positives = 11/15 (73%) Frame = -1 Query: 62 LRCWMVVYVCQWCGV 18 L CW++VY C W GV Sbjct: 240 LACWVLVYFCVWKGV 254
>UL104_HCMVA (P16735) Protein UL104| Length = 697 Score = 27.3 bits (59), Expect = 9.7 Identities = 12/31 (38%), Positives = 16/31 (51%) Frame = +3 Query: 240 CAQHQGHRRPPHRADAAGVPEQGDGGVRRPG 332 C++ + RR R A GVPE+G PG Sbjct: 623 CSREKARRRQMSREAAGGVPERGTASSGGPG 653
>RELA_STRAT (O85709) GTP pyrophosphokinase (EC 2.7.6.5) (ATP:GTP| 3'-pyrophosphotransferase) (ppGpp synthetase I) ((P)ppGpp synthetase) Length = 841 Score = 27.3 bits (59), Expect = 9.7 Identities = 14/29 (48%), Positives = 16/29 (55%) Frame = +3 Query: 231 RPRCAQHQGHRRPPHRADAAGVPEQGDGG 317 RP+ A + R PP RA AAG P GG Sbjct: 50 RPKPAPPERPRPPPPRARAAGQPAARSGG 78 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 33,038,910 Number of Sequences: 219361 Number of extensions: 416955 Number of successful extensions: 1726 Number of sequences better than 10.0: 34 Number of HSP's better than 10.0 without gapping: 1665 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1726 length of database: 80,573,946 effective HSP length: 87 effective length of database: 61,489,539 effective search space used: 1475748936 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
