ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart52f08 |
|---|---|
| Clone Library Name | barley_pub |
>FBX17_RAT (Q6AY27) F-box only protein 17| Length = 250 Score = 44.3 bits (103), Expect = 2e-04 Identities = 29/89 (32%), Positives = 40/89 (44%) Frame = +3 Query: 99 RATDPKAMASPPAALPEDVVLEILARVPDAAGLFRCAAACRCWRTLVADPSFLRRRWPDG 278 R T+ + MA A LP +++L++L+ VP A + RC CR WR LV PS + Sbjct: 9 RMTEAQHMAL--AELPPELLLQVLSHVPPRALVTRCRPVCRAWRDLVDGPSVWLLQLARD 66 Query: 279 ARHPSSLLGFFGQECCRRPGGEDHHGDVP 365 L Q C P + H D P Sbjct: 67 RSAEGRALYALAQSC---PADRNGHDDFP 92
>FBX17_MOUSE (Q9QZM8) F-box only protein 17 (F-box only protein 26)| Length = 286 Score = 39.3 bits (90), Expect = 0.006 Identities = 16/37 (43%), Positives = 24/37 (64%) Frame = +3 Query: 141 LPEDVVLEILARVPDAAGLFRCAAACRCWRTLVADPS 251 LP ++++++L+ VP A + RC CR WR LV PS Sbjct: 21 LPPELLVQVLSHVPPRALVTRCRPVCRAWRDLVDGPS 57
>FBX17_HUMAN (Q96EF6) F-box only protein 17 (F-box only protein 26)| Length = 278 Score = 37.7 bits (86), Expect = 0.016 Identities = 14/38 (36%), Positives = 25/38 (65%) Frame = +3 Query: 138 ALPEDVVLEILARVPDAAGLFRCAAACRCWRTLVADPS 251 ALP ++++++L+ VP + + RC CR WR +V P+ Sbjct: 20 ALPPELLVQVLSHVPPRSLVTRCRPVCRAWRDIVDGPT 57
>FBX6_MOUSE (Q9QZN4) F-box only protein 6 (F-box only protein 6b)| Length = 295 Score = 36.6 bits (83), Expect = 0.036 Identities = 20/62 (32%), Positives = 30/62 (48%) Frame = +3 Query: 141 LPEDVVLEILARVPDAAGLFRCAAACRCWRTLVADPSFLRRRWPDGARHPSSLLGFFGQE 320 LPE+++LE+ +P L C CR WR L+ S +R+ S GFF ++ Sbjct: 7 LPENILLELFIHIPAPQLLRNCRLVCRLWRDLIDVVSLWKRK--------SLREGFFTKD 58 Query: 321 CC 326 C Sbjct: 59 RC 60
>FBX44_MOUSE (Q8BK26) F-box only protein 44 (F-box only protein 6a)| Length = 255 Score = 34.7 bits (78), Expect = 0.14 Identities = 13/33 (39%), Positives = 19/33 (57%) Frame = +3 Query: 141 LPEDVVLEILARVPDAAGLFRCAAACRCWRTLV 239 LPE+++LE+ +P L RC C WR L+ Sbjct: 9 LPENILLELFIHIPARQLLLRCRPVCSLWRDLI 41
>FBX27_MACFA (Q9N0C8) F-box only protein 27| Length = 280 Score = 34.7 bits (78), Expect = 0.14 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 5/52 (9%) Frame = +3 Query: 99 RATDPKAMASPPAAL-----PEDVVLEILARVPDAAGLFRCAAACRCWRTLV 239 R P+ + P AL P +++L +L+ VP L RC CR WR LV Sbjct: 12 RVPAPEPESEPEEALDLSQLPPELLLVVLSHVPPRTLLGRCRQVCRGWRALV 63
>FBX27_HUMAN (Q8NI29) F-box only protein 27 (F-box/G-domain protein 5)| Length = 283 Score = 34.3 bits (77), Expect = 0.18 Identities = 15/33 (45%), Positives = 20/33 (60%) Frame = +3 Query: 141 LPEDVVLEILARVPDAAGLFRCAAACRCWRTLV 239 LP +++L +L+ VP L RC CR WR LV Sbjct: 29 LPPELLLVVLSHVPPRTLLGRCRQVCRGWRALV 61
>FBX27_MOUSE (Q6DIA9) F-box only protein 27| Length = 280 Score = 34.3 bits (77), Expect = 0.18 Identities = 14/33 (42%), Positives = 19/33 (57%) Frame = +3 Query: 141 LPEDVVLEILARVPDAAGLFRCAAACRCWRTLV 239 LP +++L +L+ VP L C CR WR LV Sbjct: 26 LPPELLLLVLSHVPPRTLLMHCRRVCRAWRALV 58
>FBX6_HUMAN (Q9NRD1) F-box only protein 6 (F-box/G-domain protein 2)| Length = 293 Score = 33.9 bits (76), Expect = 0.23 Identities = 16/46 (34%), Positives = 21/46 (45%) Frame = +3 Query: 102 ATDPKAMASPPAALPEDVVLEILARVPDAAGLFRCAAACRCWRTLV 239 A KA LPE+++LE+ VP L C C WR L+ Sbjct: 3 APHSKAALDSINELPENILLELFTHVPARQLLLNCRLVCSLWRDLI 48
>FBX44_HUMAN (Q9H4M3) F-box only protein 44 (F-box protein FBX30)| (F-box/G-domain protein 3) Length = 255 Score = 33.5 bits (75), Expect = 0.30 Identities = 13/33 (39%), Positives = 18/33 (54%) Frame = +3 Query: 141 LPEDVVLEILARVPDAAGLFRCAAACRCWRTLV 239 LPE+++LE+ VP L C C WR L+ Sbjct: 9 LPENILLELFTHVPARQLLLNCRLVCSLWRDLI 41
>FBX6_RAT (Q923V4) F-box only protein 6 (F-box only protein 6b)| (F-box/G-domain protein 2) Length = 284 Score = 32.7 bits (73), Expect = 0.52 Identities = 14/42 (33%), Positives = 22/42 (52%) Frame = +3 Query: 141 LPEDVVLEILARVPDAAGLFRCAAACRCWRTLVADPSFLRRR 266 LPE+++LE+ VP L C C WR L+ + +R+ Sbjct: 7 LPENILLELFTHVPAPQLLRNCRLVCSLWRDLIDVMTLWKRK 48
>FBX18_HUMAN (Q8NFZ0) F-box only protein 18 (EC 3.6.1.-) (F-box DNA helicase 1)| Length = 1043 Score = 30.0 bits (66), Expect = 3.3 Identities = 11/40 (27%), Positives = 22/40 (55%) Frame = +3 Query: 138 ALPEDVVLEILARVPDAAGLFRCAAACRCWRTLVADPSFL 257 +LP +V+ + A +P + + C WR +++DP F+ Sbjct: 214 SLPSEVLRHVFAFLPVEDLYWNLSLVCHLWREIISDPLFI 253
>FBXL7_HUMAN (Q9UJT9) F-box/LRR-repeat protein 7 (F-box and leucine-rich repeat| protein 7) (F-box protein FBL6/FBL7) Length = 491 Score = 29.6 bits (65), Expect = 4.4 Identities = 23/76 (30%), Positives = 34/76 (44%) Frame = +3 Query: 33 ANLASPTPFATSTGLITYHT*VRATDPKAMASPPAALPEDVVLEILARVPDAAGLFRCAA 212 A + SP P + LI A+ P+ + LP+ +++I + +P L RCA Sbjct: 86 AMVHSPPPTRLTHPLIRL-----ASRPQKEQASIDRLPDHSMVQIFSFLPTNQ-LCRCAR 139 Query: 213 ACRCWRTLVADPSFLR 260 CR W L DP R Sbjct: 140 VCRRWYNLAWDPRLWR 155
>FBX2_MOUSE (Q80UW2) F-box only protein 2| Length = 297 Score = 29.3 bits (64), Expect = 5.7 Identities = 13/35 (37%), Positives = 19/35 (54%) Frame = +3 Query: 135 AALPEDVVLEILARVPDAAGLFRCAAACRCWRTLV 239 A LPE ++L +LA +P + C C W+ LV Sbjct: 52 AELPEPLLLRVLAELPATELVQACRLVCLRWKELV 86
>FBX2_HUMAN (Q9UK22) F-box only protein 2| Length = 296 Score = 29.3 bits (64), Expect = 5.7 Identities = 13/33 (39%), Positives = 19/33 (57%) Frame = +3 Query: 141 LPEDVVLEILARVPDAAGLFRCAAACRCWRTLV 239 LPE ++L +LA +P A + C C W+ LV Sbjct: 50 LPEPLLLRVLAALPAAELVQACRLVCLRWKELV 82
>MCM4_HUMAN (P33991) DNA replication licensing factor MCM4 (CDC21 homolog)| (P1-CDC21) Length = 863 Score = 29.3 bits (64), Expect = 5.7 Identities = 18/37 (48%), Positives = 24/37 (64%), Gaps = 1/37 (2%) Frame = -1 Query: 331 RRQHSWPKK-PRSEDGWRAPSGQRRRRKDGSATSVLQ 224 RR + P + PRSED +PS QRRR +D ++T LQ Sbjct: 14 RRGRATPAQTPRSEDARSSPS-QRRRGEDSTSTGELQ 49
>ACHE_RAT (P09660) Acetylcholine receptor protein, epsilon subunit precursor| Length = 494 Score = 29.3 bits (64), Expect = 5.7 Identities = 25/75 (33%), Positives = 32/75 (42%) Frame = -1 Query: 418 GRSDPRTDPGARTKXXXXXXXXXXXXXXGRRQHSWPKKPRSEDGWRAPSGQRRRRKDGSA 239 G S P DPGA + R + KKPRSE + GQR R +A Sbjct: 355 GLSPPPEDPGAASPARRASSVGILL----RAEELILKKPRSELVFE---GQRHRHGTWTA 407 Query: 238 TSVLQHLHAAAQRKR 194 ++ Q+L AAA R Sbjct: 408 AALCQNLGAAAPEVR 422
>DPY5_CAEEL (P91285) Cuticle collagen dpy-5 (Protein dumpy-5)| Length = 284 Score = 28.9 bits (63), Expect = 7.5 Identities = 16/49 (32%), Positives = 20/49 (40%), Gaps = 7/49 (14%) Frame = +3 Query: 270 PDGARHPSSLLGF-------FGQECCRRPGGEDHHGDVPDSPGFVRAPG 395 PDG P+ L G F +EC + P G +P GF PG Sbjct: 113 PDGKNGPTGLPGLNIPIPNDFPKECIKCPAGPPGQDGLPGQEGFQGLPG 161
>COL13_CAEEL (P20631) Cuticle collagen 13 precursor| Length = 316 Score = 28.5 bits (62), Expect = 9.7 Identities = 20/62 (32%), Positives = 24/62 (38%), Gaps = 5/62 (8%) Frame = +3 Query: 270 PDGARHPSSLLGFFGQECCRRPGGEDHHGD-----VPDSPGFVRAPGSVLGSERPFLCSF 434 P G+ P+ G GQ +PGG GD P +PG APG S C Sbjct: 247 PPGSPGPAGAPGQPGQAGSSQPGGPGPQGDAGAPGAPGAPGQAGAPGQDGESGSEGACDH 306 Query: 435 LP 440 P Sbjct: 307 CP 308
>COL12_CAEEL (P20630) Cuticle collagen 12 precursor| Length = 316 Score = 28.5 bits (62), Expect = 9.7 Identities = 20/62 (32%), Positives = 24/62 (38%), Gaps = 5/62 (8%) Frame = +3 Query: 270 PDGARHPSSLLGFFGQECCRRPGGEDHHGD-----VPDSPGFVRAPGSVLGSERPFLCSF 434 P G+ P+ G GQ +PGG GD P +PG APG S C Sbjct: 247 PPGSPGPAGAPGQPGQAGSSQPGGPGPQGDAGAPGAPGAPGQAGAPGQDGESGSEGACDH 306 Query: 435 LP 440 P Sbjct: 307 CP 308
>SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1| (Plenty-of-prolines 101) Length = 946 Score = 28.5 bits (62), Expect = 9.7 Identities = 24/93 (25%), Positives = 32/93 (34%) Frame = -1 Query: 469 TARSKMPAAPGRKEHRKGRSDPRTDPGARTKXXXXXXXXXXXXXXGRRQHSWPKKPRSED 290 T +MP P HR+ RS PG R + R S PKKP Sbjct: 325 TPPRRMPPPP---RHRRSRS-----PGRRRRRSSASLSGSSSSSSSSRSRSPPKKPPK-- 374 Query: 289 GWRAPSGQRRRRKDGSATSVLQHLHAAAQRKRP 191 R S R+ R+ + S + H + P Sbjct: 375 --RTSSPPRKTRRLSPSASPPRRRHRPSSPATP 405
>ABCBA_HUMAN (Q9NRK6) ATP-binding cassette sub-family B member 10, mitochondrial| precursor (ATP-binding cassette transporter 10) (ABC transporter 10 protein) (Mitochondrial ATP-binding cassette 2) (M-ABC2) Length = 738 Score = 28.5 bits (62), Expect = 9.7 Identities = 21/68 (30%), Positives = 27/68 (39%), Gaps = 5/68 (7%) Frame = +3 Query: 96 VRATDPKAMASPPAALPEDVVLEILARVPDAAGLFRCAAACRCWRTLVADPSFL-----R 260 +R +P + A P LP V +RVP + F R W A P+ L Sbjct: 9 LRLLEPPSPAEPGRLLPVACVWAAASRVPGSLSPFTGLRPARLWG---AGPALLWGVGAA 65 Query: 261 RRWPDGAR 284 RRW G R Sbjct: 66 RRWRSGCR 73
>DIA2_ASHGO (Q75A03) Protein DIA2| Length = 685 Score = 28.5 bits (62), Expect = 9.7 Identities = 12/44 (27%), Positives = 23/44 (52%) Frame = +3 Query: 99 RATDPKAMASPPAALPEDVVLEILARVPDAAGLFRCAAACRCWR 230 + + KA A LP +++ I+A + D + RC + C+ W+ Sbjct: 199 KRSSSKAKIDYIATLPVEIIERIMANM-DTRSIIRCYSVCKLWK 241
>PYGB_SHEEP (Q5MIB6) Glycogen phosphorylase, brain form (EC 2.4.1.1)| Length = 842 Score = 28.5 bits (62), Expect = 9.7 Identities = 13/45 (28%), Positives = 23/45 (51%) Frame = +3 Query: 18 SKIVAANLASPTPFATSTGLITYHT*VRATDPKAMASPPAALPED 152 +K V N+A F++ + Y + +P A+ +PP +LP D Sbjct: 798 TKKVIRNIACSGKFSSDRTITEYARDIWGAEPPALQTPPPSLPRD 842 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.312 0.127 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 42,234,145 Number of Sequences: 219361 Number of extensions: 751251 Number of successful extensions: 1969 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 1891 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1969 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3304846491 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits)
