ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart52f08 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_480589.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1768 Score = 63.9 bits (32), Expect = 5e-07 Identities = 65/76 (85%) Strand = Plus / Plus Query: 144 ccggaggacgtggtgctggagatcctcgcgcgcgtgccggacgccgcgggcctcttccgc 203 ||||||||||| || | |||||||||||||| ||||||||| | || |||||||||| Sbjct: 124 ccggaggacgtcgtcatcgagatcctcgcgcgggtgccggacccgacgtccctcttccgc 183 Query: 204 tgcgccgcggcgtgca 219 |||||||| ||||||| Sbjct: 184 tgcgccgcagcgtgca 199 Score = 42.1 bits (21), Expect = 1.7 Identities = 30/33 (90%) Strand = Plus / Plus Query: 240 gccgacccgtccttcctccgccgccgctggccg 272 ||||||| | |||| |||||||||||||||||| Sbjct: 220 gccgaccaggccttactccgccgccgctggccg 252
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 63.9 bits (32), Expect = 5e-07 Identities = 65/76 (85%) Strand = Plus / Plus Query: 144 ccggaggacgtggtgctggagatcctcgcgcgcgtgccggacgccgcgggcctcttccgc 203 ||||||||||| || | |||||||||||||| ||||||||| | || |||||||||| Sbjct: 6049608 ccggaggacgtcgtcatcgagatcctcgcgcgggtgccggacccgacgtccctcttccgc 6049667 Query: 204 tgcgccgcggcgtgca 219 |||||||| ||||||| Sbjct: 6049668 tgcgccgcagcgtgca 6049683 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 200 ccgctgcgccgcggcgtgcaggtgctgga 228 ||||| |||||||||| |||||||||||| Sbjct: 26037274 ccgctccgccgcggcgagcaggtgctgga 26037302 Score = 42.1 bits (21), Expect = 1.7 Identities = 30/33 (90%) Strand = Plus / Plus Query: 240 gccgacccgtccttcctccgccgccgctggccg 272 ||||||| | |||| |||||||||||||||||| Sbjct: 6049704 gccgaccaggccttactccgccgccgctggccg 6049736
>dbj|AP003858.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1014_H11 Length = 122464 Score = 63.9 bits (32), Expect = 5e-07 Identities = 65/76 (85%) Strand = Plus / Plus Query: 144 ccggaggacgtggtgctggagatcctcgcgcgcgtgccggacgccgcgggcctcttccgc 203 ||||||||||| || | |||||||||||||| ||||||||| | || |||||||||| Sbjct: 100420 ccggaggacgtcgtcatcgagatcctcgcgcgggtgccggacccgacgtccctcttccgc 100479 Query: 204 tgcgccgcggcgtgca 219 |||||||| ||||||| Sbjct: 100480 tgcgccgcagcgtgca 100495 Score = 42.1 bits (21), Expect = 1.7 Identities = 30/33 (90%) Strand = Plus / Plus Query: 240 gccgacccgtccttcctccgccgccgctggccg 272 ||||||| | |||| |||||||||||||||||| Sbjct: 100516 gccgaccaggccttactccgccgccgctggccg 100548
>dbj|AP004565.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0486F07 Length = 154926 Score = 63.9 bits (32), Expect = 5e-07 Identities = 65/76 (85%) Strand = Plus / Plus Query: 144 ccggaggacgtggtgctggagatcctcgcgcgcgtgccggacgccgcgggcctcttccgc 203 ||||||||||| || | |||||||||||||| ||||||||| | || |||||||||| Sbjct: 5625 ccggaggacgtcgtcatcgagatcctcgcgcgggtgccggacccgacgtccctcttccgc 5684 Query: 204 tgcgccgcggcgtgca 219 |||||||| ||||||| Sbjct: 5685 tgcgccgcagcgtgca 5700 Score = 42.1 bits (21), Expect = 1.7 Identities = 30/33 (90%) Strand = Plus / Plus Query: 240 gccgacccgtccttcctccgccgccgctggccg 272 ||||||| | |||| |||||||||||||||||| Sbjct: 5721 gccgaccaggccttactccgccgccgctggccg 5753
>dbj|AK106289.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-101-B01, full insert sequence Length = 1768 Score = 63.9 bits (32), Expect = 5e-07 Identities = 65/76 (85%) Strand = Plus / Plus Query: 144 ccggaggacgtggtgctggagatcctcgcgcgcgtgccggacgccgcgggcctcttccgc 203 ||||||||||| || | |||||||||||||| ||||||||| | || |||||||||| Sbjct: 124 ccggaggacgtcgtcatcgagatcctcgcgcgggtgccggacccgacgtccctcttccgc 183 Query: 204 tgcgccgcggcgtgca 219 |||||||| ||||||| Sbjct: 184 tgcgccgcagcgtgca 199 Score = 42.1 bits (21), Expect = 1.7 Identities = 30/33 (90%) Strand = Plus / Plus Query: 240 gccgacccgtccttcctccgccgccgctggccg 272 ||||||| | |||| |||||||||||||||||| Sbjct: 220 gccgaccaggccttactccgccgccgctggccg 252
>ref|NM_183593.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1785 Score = 44.1 bits (22), Expect = 0.42 Identities = 25/26 (96%) Strand = Plus / Minus Query: 167 cctcgcgcgcgtgccggacgccgcgg 192 |||||||||||||| ||||||||||| Sbjct: 1477 cctcgcgcgcgtgcaggacgccgcgg 1452
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Plus Query: 325 gccgccgccccggcggagaaga 346 |||||||||||||||||||||| Sbjct: 1434552 gccgccgccccggcggagaaga 1434573
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 44.1 bits (22), Expect = 0.42 Identities = 25/26 (96%) Strand = Plus / Plus Query: 167 cctcgcgcgcgtgccggacgccgcgg 192 |||||||||||||| ||||||||||| Sbjct: 10487332 cctcgcgcgcgtgcaggacgccgcgg 10487357
>dbj|AP002480.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0469E05 Length = 160769 Score = 44.1 bits (22), Expect = 0.42 Identities = 25/26 (96%) Strand = Plus / Plus Query: 167 cctcgcgcgcgtgccggacgccgcgg 192 |||||||||||||| ||||||||||| Sbjct: 132292 cctcgcgcgcgtgcaggacgccgcgg 132317
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Minus Query: 197 cttccgctgcgccgcggcgtgc 218 |||||||||||||||||||||| Sbjct: 1730495 cttccgctgcgccgcggcgtgc 1730474
>ref|XM_483406.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1050 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 200 ccgctgcgccgcggcgtgcaggtgctgga 228 ||||| |||||||||| |||||||||||| Sbjct: 801 ccgctccgccgcggcgagcaggtgctgga 773
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome Length = 4403837 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 267 tggccggacggcgcgcgccac 287 ||||||||||||||||||||| Sbjct: 1917333 tggccggacggcgcgcgccac 1917313
>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome Length = 3814139 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 138 gcgctcccggaggacgtggtg 158 ||||||||||||||||||||| Sbjct: 3643887 gcgctcccggaggacgtggtg 3643867
>gb|BT009628.1| Triticum aestivum clone wre1n.pk164.e9:fis, full insert mRNA sequence Length = 817 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 279 gcgcgccacccgtcctcgctcctcggctt 307 ||||||||| | ||||||||||||||||| Sbjct: 169 gcgcgccactcctcctcgctcctcggctt 141
>emb|BX842577.1| Mycobacterium tuberculosis H37Rv complete genome; segment 6/13 Length = 347496 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 267 tggccggacggcgcgcgccac 287 ||||||||||||||||||||| Sbjct: 195274 tggccggacggcgcgcgccac 195254
>emb|BX248339.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 6/14 Length = 300050 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 267 tggccggacggcgcgcgccac 287 ||||||||||||||||||||| Sbjct: 297873 tggccggacggcgcgcgccac 297853
>emb|AL939106.1|SCO939106 Streptomyces coelicolor A3(2) complete genome; segment 3/29 Length = 314100 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 149 ggacgtggtgctggagatcctcgcgcgcg 177 ||||||||||||||| |||||||||||| Sbjct: 272080 ggacgtggtgctggacttcctcgcgcgcg 272108
>gb|AC092846.5| Homo sapiens BAC clone RP11-617A17 from 4, complete sequence Length = 197540 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 416 ccccttcctgtgctccttcct 436 ||||||||||||||||||||| Sbjct: 43175 ccccttcctgtgctccttcct 43195
>gb|CP000232.1| Moorella thermoacetica ATCC 39073, complete genome Length = 2628784 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 422 cctgtgctccttcctgcccggcgcc 446 ||||| ||||||||||||||||||| Sbjct: 311997 cctgtactccttcctgcccggcgcc 312021
>gb|AE016820.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome VII, complete sequence Length = 1476513 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 142 tcccggaggacgtggtgctgg 162 ||||||||||||||||||||| Sbjct: 1054952 tcccggaggacgtggtgctgg 1054972
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 116 ggccatggcgtcgccgccggc 136 ||||||||||||||||||||| Sbjct: 25524409 ggccatggcgtcgccgccggc 25524389
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 132 ccggccgcgctcccggaggac 152 ||||||||||||||||||||| Sbjct: 2899943 ccggccgcgctcccggaggac 2899923
>gb|AC019047.7| Homo sapiens BAC clone RP11-83N2 from 2, complete sequence Length = 165007 Score = 42.1 bits (21), Expect = 1.7 Identities = 28/29 (96%), Gaps = 1/29 (3%) Strand = Plus / Plus Query: 96 gtgagagccactgatcccaaggccatggc 124 ||||||||||||||| ||||||||||||| Sbjct: 150514 gtgagagccactgat-ccaaggccatggc 150541
>dbj|AP004067.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1581_H09 Length = 86699 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 116 ggccatggcgtcgccgccggc 136 ||||||||||||||||||||| Sbjct: 15808 ggccatggcgtcgccgccggc 15788
>dbj|AP003887.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1186_G01 Length = 112077 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 200 ccgctgcgccgcggcgtgcaggtgctgga 228 ||||| |||||||||| |||||||||||| Sbjct: 72835 ccgctccgccgcggcgagcaggtgctgga 72863
>dbj|AP003865.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1081_B12 Length = 124741 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 200 ccgctgcgccgcggcgtgcaggtgctgga 228 ||||| |||||||||| |||||||||||| Sbjct: 122151 ccgctccgccgcggcgagcaggtgctgga 122179
>ref|NM_211893.1| Eremothecium gossypii AGR165Wp (AGR165W), mRNA Length = 1503 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 142 tcccggaggacgtggtgctgg 162 ||||||||||||||||||||| Sbjct: 572 tcccggaggacgtggtgctgg 592
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 157 tgctggagatcctcgcgcgcgtgccggac 185 |||| |||||||||||||||||| ||||| Sbjct: 1689024 tgctcgagatcctcgcgcgcgtggcggac 1689052
>dbj|AB070947.1| Streptomyces avermitilis polyketide-9 biosynthetic gene cluster Length = 24268 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 132 ccggccgcgctcccggaggac 152 ||||||||||||||||||||| Sbjct: 17926 ccggccgcgctcccggaggac 17946
>gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome Length = 3730232 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 203 ctgcgccgcggcgtgcaggt 222 |||||||||||||||||||| Sbjct: 3580410 ctgcgccgcggcgtgcaggt 3580391
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence Length = 3694126 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 265 gctggccggacggcgcgcgc 284 |||||||||||||||||||| Sbjct: 3027372 gctggccggacggcgcgcgc 3027353
>gb|AC154709.2| Mus musculus BAC clone RP24-357I4 from chromosome 12, complete sequence Length = 136354 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 380 cgtccgcgccccggggtcgg 399 |||||||||||||||||||| Sbjct: 94302 cgtccgcgccccggggtcgg 94283
>ref|XM_878399.1| PREDICTED: Bos taurus similar to seizure related 6 homolog (mouse)-like 2 isoform 1, transcript variant 5 (LOC505735), mRNA Length = 3153 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 421 tcctgtgctccttcctgccc 440 |||||||||||||||||||| Sbjct: 2690 tcctgtgctccttcctgccc 2671
>ref|XM_582070.2| PREDICTED: Bos taurus similar to seizure related 6 homolog (mouse)-like 2 isoform 1, transcript variant 1 (LOC505735), mRNA Length = 3260 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 421 tcctgtgctccttcctgccc 440 |||||||||||||||||||| Sbjct: 2797 tcctgtgctccttcctgccc 2778
>ref|XM_878315.1| PREDICTED: Bos taurus similar to seizure related 6 homolog (mouse)-like 2 isoform 1, transcript variant 4 (LOC505735), mRNA Length = 3114 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 421 tcctgtgctccttcctgccc 440 |||||||||||||||||||| Sbjct: 2651 tcctgtgctccttcctgccc 2632
>ref|XM_878275.1| PREDICTED: Bos taurus similar to seizure related 6 homolog (mouse)-like 2 isoform 1, transcript variant 3 (LOC505735), mRNA Length = 2957 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 421 tcctgtgctccttcctgccc 440 |||||||||||||||||||| Sbjct: 2494 tcctgtgctccttcctgccc 2475
>gb|CP000359.1| Deinococcus geothermalis DSM 11300, complete genome Length = 2467205 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 148 aggacgtggtgctggagatc 167 |||||||||||||||||||| Sbjct: 2407209 aggacgtggtgctggagatc 2407190
>gb|BC114092.1| Bos taurus seizure related 6 homolog (mouse)-like 2, transcript variant 1, mRNA (cDNA clone MGC:137627 IMAGE:8162775), complete cds Length = 3148 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 421 tcctgtgctccttcctgccc 440 |||||||||||||||||||| Sbjct: 3022 tcctgtgctccttcctgccc 3003
>gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, complete genome Length = 5928787 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 264 cgctggccggacggcgcgcgccac 287 ||||||||||||||||| |||||| Sbjct: 487028 cgctggccggacggcgctcgccac 487051
>gb|CP000088.1| Thermobifida fusca YX, complete genome Length = 3642249 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 370 cgccgggcttcgtccgcgcc 389 |||||||||||||||||||| Sbjct: 621020 cgccgggcttcgtccgcgcc 621001
>emb|CR555308.1| Azoarcus sp. EbN1 plasmid 2 Length = 223670 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 39 ctcgcatctccaactccttt 58 |||||||||||||||||||| Sbjct: 202902 ctcgcatctccaactccttt 202921
>gb|AE005681.1| Caulobacter crescentus CB15 section 7 of 359 of the complete genome Length = 10507 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 120 atggcgtcgccgccggccgc 139 |||||||||||||||||||| Sbjct: 4752 atggcgtcgccgccggccgc 4733
>gb|AC010404.5| Homo sapiens chromosome 4 clone CTD-2149O24, complete sequence Length = 142694 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 417 cccttcctgtgctccttcct 436 |||||||||||||||||||| Sbjct: 35744 cccttcctgtgctccttcct 35725
>gb|CP000264.1| Jannaschia sp. CCS1, complete genome Length = 4317977 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 145 cggaggacgtggtgctggag 164 |||||||||||||||||||| Sbjct: 3123204 cggaggacgtggtgctggag 3123223
>gb|AC142247.2| Homo sapiens chromosome 17, clone XXfos-85526C9, complete sequence Length = 35843 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 416 ccccttcctgtgctccttcc 435 |||||||||||||||||||| Sbjct: 30559 ccccttcctgtgctccttcc 30540
>gb|AC138315.2| Homo sapiens 3 BAC RP11-163K7 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 55014 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 416 ccccttcctgtgctccttcc 435 |||||||||||||||||||| Sbjct: 20066 ccccttcctgtgctccttcc 20047
>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome Length = 1849742 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 146 ggaggacgtggtgctggagatcct 169 ||||| |||||||||||||||||| Sbjct: 1744989 ggagggcgtggtgctggagatcct 1744966
>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence Length = 2648638 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 380 cgtccgcgccccggggtcgg 399 |||||||||||||||||||| Sbjct: 2043008 cgtccgcgccccggggtcgg 2043027
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 232 cgctggtggccgacccgtcc 251 |||||||||||||||||||| Sbjct: 1207947 cgctggtggccgacccgtcc 1207966
>gb|AE017221.1| Thermus thermophilus HB27, complete genome Length = 1894877 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 329 ccgccccggcggagaagatc 348 |||||||||||||||||||| Sbjct: 1852159 ccgccccggcggagaagatc 1852140 Score = 40.1 bits (20), Expect = 6.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 146 ggaggacgtggtgctggagatcct 169 ||||| |||||||||||||||||| Sbjct: 1434558 ggagggcgtggtgctggagatcct 1434535
>emb|AL662804.18| Mouse DNA sequence from clone RP23-341C5 on chromosome 11, complete sequence Length = 223438 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 421 tcctgtgctccttcctgccc 440 |||||||||||||||||||| Sbjct: 193981 tcctgtgctccttcctgccc 193962 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,378,674 Number of Sequences: 3902068 Number of extensions: 3378674 Number of successful extensions: 97466 Number of sequences better than 10.0: 51 Number of HSP's better than 10.0 without gapping: 51 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 94586 Number of HSP's gapped (non-prelim): 2876 length of query: 484 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 462 effective length of database: 17,147,199,772 effective search space: 7922006294664 effective search space used: 7922006294664 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
