ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart52e09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1UDU2_ARATH (Q9FHD4) DUF26 domain-containing protein 2 precursor 46 6e-05
2UDU1_ARATH (Q9FHD5) DUF26 domain-containing protein 1 precursor 44 2e-04
3UDU3_ARATH (Q9FHD3) Hypothetical DUF26 domain-containing protein... 42 8e-04

>UDU2_ARATH (Q9FHD4) DUF26 domain-containing protein 2 precursor|
          Length = 287

 Score = 45.8 bits (107), Expect = 6e-05
 Identities = 29/108 (26%), Positives = 47/108 (43%), Gaps = 4/108 (3%)
 Frame = +1

Query: 151 SGVDAIGTYCAK---NGTSAET-QASIDQVLAALVPXXXXXXXXXXXXXXXXXXVWGLAQ 318
           S  D + T+C K   N TS  T   +++ +L+ L                    V G+  
Sbjct: 24  SDPDDMETFCMKSSRNTTSNTTYNKNLNTLLSTLSNQSSFANYYNLTTGLASDTVHGMFL 83

Query: 319 CRGDVPRQDCSLCLAAAAKEVASSCRGSSDGRVFYDYCLLRYSTANFI 462
           C GDV R  C+ C+  A  E+A +C    +  ++   C++RYS   F+
Sbjct: 84  CTGDVNRTTCNACVKNATIEIAKNCTNHREAIIYNVDCMVRYSDKFFL 131



 Score = 31.6 bits (70), Expect = 1.1
 Identities = 12/49 (24%), Positives = 24/49 (48%)
 Frame = +1

Query: 310 LAQCRGDVPRQDCSLCLAAAAKEVASSCRGSSDGRVFYDYCLLRYSTAN 456
           + QC  D+  ++C+ CL  A +E+   C       ++   C++ + T N
Sbjct: 197 IVQCTPDLDPRNCTTCLKLALQELTECCGNQVWAFIYTPNCMVSFDTYN 245



to top

>UDU1_ARATH (Q9FHD5) DUF26 domain-containing protein 1 precursor|
          Length = 286

 Score = 44.3 bits (103), Expect = 2e-04
 Identities = 19/54 (35%), Positives = 30/54 (55%)
 Frame = +1

Query: 301 VWGLAQCRGDVPRQDCSLCLAAAAKEVASSCRGSSDGRVFYDYCLLRYSTANFI 462
           V G+  C GDV R  C+ C+  A  E+A +C    +  ++Y  C++RYS   F+
Sbjct: 79  VHGMFLCIGDVNRTTCNACVKNATIEIAKNCTNHREAIIYYFSCMVRYSDKFFL 132



 Score = 31.2 bits (69), Expect = 1.4
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = +1

Query: 310 LAQCRGDVPRQDCSLCLAAAAKEVASSCRGSSDGRVFYDYCLLRYSTAN 456
           + QC   +  ++C+ CL  A +E+   C       +F   CL+ + T+N
Sbjct: 198 VVQCSPHLDPKNCTTCLKLALQELTQCCGDQLWAFIFTPKCLVSFDTSN 246



to top

>UDU3_ARATH (Q9FHD3) Hypothetical DUF26 domain-containing protein 3 precursor|
          Length = 287

 Score = 42.0 bits (97), Expect = 8e-04
 Identities = 25/108 (23%), Positives = 46/108 (42%), Gaps = 4/108 (3%)
 Frame = +1

Query: 151 SGVDAIGTYC---AKNGTSAET-QASIDQVLAALVPXXXXXXXXXXXXXXXXXXVWGLAQ 318
           S  D + T+C   ++N T   T   +++ +L+                      V+G+  
Sbjct: 28  SETDHMDTFCIDSSRNTTGNTTYNKNLNTMLSTFRNQSSIVNNYNLTTGLASDTVYGMFL 87

Query: 319 CRGDVPRQDCSLCLAAAAKEVASSCRGSSDGRVFYDYCLLRYSTANFI 462
           C GDV    C+ C+  A  E+  +C    +  ++Y  C++RYS   F+
Sbjct: 88  CTGDVNITTCNNCVKNATIEIVKNCTNHREAIIYYIDCMVRYSDKFFL 135



 Score = 30.4 bits (67), Expect = 2.4
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = +1

Query: 310 LAQCRGDVPRQDCSLCLAAAAKEVASSCRGSSDGRVFYDYCLLRY 444
           L QC   +  ++C++CL  A +E+   C       +F   C + Y
Sbjct: 201 LVQCSPHLNPENCTICLEYALQEIIDCCSDKFWAMIFTPNCFVNY 245


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,948,896
Number of Sequences: 219361
Number of extensions: 317535
Number of successful extensions: 886
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 875
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 886
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3130907202
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top