Clone Information

BLAST Search Result

Clone Name	bart52e02
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	RSMB_DROME (Q05856) Small nuclear ribonucleoprotein-associated p...	89	5e-18
2	RSMB_MOUSE (P27048) Small nuclear ribonucleoprotein-associated p...	86	3e-17
3	RSMB_HUMAN (P14678) Small nuclear ribonucleoprotein-associated p...	86	3e-17
4	RSMB_ERIEU (Q9TU67) Small nuclear ribonucleoprotein-associated p...	86	3e-17
5	RSMB_CHICK (Q9PV94) Small nuclear ribonucleoprotein-associated p...	86	4e-17
6	RSMN_RAT (P63164) Small nuclear ribonucleoprotein-associated pro...	84	1e-16
7	RSMN_MOUSE (P63163) Small nuclear ribonucleoprotein-associated p...	84	1e-16
8	RSMN_HUMAN (P63162) Small nuclear ribonucleoprotein-associated p...	84	1e-16
9	RSMB_MONDO (Q9TU66) Small nuclear ribonucleoprotein-associated p...	83	3e-16
10	RSMB_CAEEL (P91918) Probable small nuclear ribonucleoprotein ass...	79	7e-15
11	RSMB_RAT (P17136) Small nuclear ribonucleoprotein-associated pro...	65	1e-10
12	YAU8_SCHPO (Q10163) Hypothetical protein C26A3.08 in chromosome I	61	1e-09
13	RSMB_YEAST (P40018) Small nuclear ribonucleoprotein-associated p...	57	2e-08
14	IF2_DESPS (Q6AJY4) Translation initiation factor IF-2	37	0.028
15	RUXX_AERPE (Q9YEQ5) Putative snRNP Sm-like protein	37	0.028
16	LSM3_MOUSE (P62311) U6 snRNA-associated Sm-like protein LSm3	37	0.028
17	LSM3_HUMAN (P62310) U6 snRNA-associated Sm-like protein LSm3	37	0.028
18	LSM1_YEAST (P47017) Sm-like protein LSm1 (SPB8 protein)	35	0.082
19	LSM3_SCHPO (Q9Y7M4) Probable U6 snRNA-associated Sm-like protein...	35	0.082
20	CWC22_NEUCR (Q7RX84) Pre-mRNA-splicing factor cwc-22	35	0.11
21	LAS17_YEAST (Q12446) Proline-rich protein LAS17	35	0.11
22	CSTF2_PONPY (Q5RDA3) Cleavage stimulation factor, 64 kDa subunit...	33	0.24
23	CSTF2_HUMAN (P33240) Cleavage stimulation factor, 64 kDa subunit...	33	0.24
24	RBM15_HUMAN (Q96T37) Putative RNA-binding protein 15 (RNA-bindin...	33	0.31
25	CSTFT_MOUSE (Q8C7E9) Cleavage stimulation factor, 64 kDa subunit...	33	0.31
26	CWC22_CRYNE (Q5KFX4) Pre-mRNA-splicing factor CWC22	33	0.31
27	PP1RA_PANTR (Q7YR38) Serine/threonine-protein phosphatase 1 regu...	33	0.31
28	PP1RA_HUMAN (Q96QC0) Serine/threonine-protein phosphatase 1 regu...	33	0.31
29	LSM8_MOUSE (Q6ZWM4) U6 snRNA-associated Sm-like protein LSm8	33	0.31
30	LSM8_HUMAN (O95777) U6 snRNA-associated Sm-like protein LSm8	33	0.31
31	SMD2_CAEEL (Q18786) Probable small nuclear ribonucleoprotein Sm ...	33	0.31
32	PP1RA_PIG (Q767K9) Serine/threonine-protein phosphatase 1 regula...	33	0.41
33	SMD2_MOUSE (P62317) Small nuclear ribonucleoprotein Sm D2 (snRNP...	33	0.41
34	SMD2_HUMAN (P62316) Small nuclear ribonucleoprotein Sm D2 (snRNP...	33	0.41
35	LSM3_YEAST (P57743) U6 snRNA-associated Sm-like protein LSm3 (Sm...	32	0.53
36	AFSK_STRGR (P54742) Serine/threonine protein kinase afsK (EC 2.7...	32	0.53
37	IF2_STRAW (Q82K53) Translation initiation factor IF-2	32	0.53
38	SMD2_DROME (Q9VI10) Probable small nuclear ribonucleoprotein Sm ...	32	0.53
39	NMDE4_HUMAN (O15399) Glutamate [NMDA] receptor subunit epsilon 4...	32	0.70
40	CD2_HORSE (P37998) T-cell surface antigen CD2 precursor	32	0.70
41	XP2_XENLA (P17437) Skin secretory protein xP2 precursor (APEG pr...	32	0.70
42	CO4A2_ASCSU (P27393) Collagen alpha-2(IV) chain precursor	32	0.70
43	RUXG_MOUSE (P62309) Small nuclear ribonucleoprotein G (snRNP-G) ...	32	0.70
44	RUXG_HUMAN (P62308) Small nuclear ribonucleoprotein G (snRNP-G) ...	32	0.70
45	LSM8_SCHPO (O74483) U6 snRNA-associated Sm-like protein LSm8	32	0.70
46	LSM5_MOUSE (P62322) U6 snRNA-associated Sm-like protein LSm5	32	0.70
47	LSM5_HUMAN (Q9Y4Y9) U6 snRNA-associated Sm-like protein LSm5	32	0.70
48	CDAN1_HUMAN (Q8IWY9) Codanin-1	31	1.2
49	CO1A1_CHICK (P02457) Collagen alpha-1(I) chain precursor	31	1.2
50	RUXX_METTH (O26745) Putative snRNP Sm-like protein	31	1.2
51	MAK31_YEAST (P23059) Protein MAK31 (Maintenance of killer protei...	31	1.2
52	RUXX_METMA (Q8PZZ9) Putative snRNP Sm-like protein	31	1.6
53	RUXX_METAC (Q8TL47) Putative snRNP Sm-like protein	30	2.0
54	RUXX_ARCFU (O29386) Putative snRNP Sm-like protein	30	2.0
55	RUXG_DROME (Q9VXE0) Probable small nuclear ribonucleoprotein G (...	30	2.0
56	RP3A_MOUSE (P47708) Rabphilin-3A (Exophilin-1)	30	2.0
57	CAC1A_MOUSE (P97445) Voltage-dependent P/Q-type calcium channel ...	30	2.0
58	YB18_SCHPO (P87173) Hypothetical protein C3D6.08c in chromosome II	30	2.0
59	YBX2A_XENLA (P21574) Y-box-binding protein 2-A (Cytoplasmic RNA-...	30	2.0
60	ROBO3_HUMAN (Q96MS0) Roundabout homolog 3 precursor (Roundabout-...	30	2.0
61	ENA_DROME (Q8T4F7) Protein enabled	30	2.0
62	CAC1A_RAT (P54282) Voltage-dependent P/Q-type calcium channel al...	30	2.0
63	SORC2_HUMAN (Q96PQ0) VPS10 domain-containing receptor SorCS2 pre...	30	2.0
64	K1543_HUMAN (Q9P1Y5) Protein KIAA1543	30	3.5
65	CSTF2_BOVIN (Q8HXM1) Cleavage stimulation factor, 64 kDa subunit...	30	3.5
66	NMDE4_RAT (Q62645) Glutamate [NMDA] receptor subunit epsilon 4 p...	30	3.5
67	CO5A1_RAT (Q9JI03) Collagen alpha-1(V) chain precursor	29	4.5
68	CO5A1_CRILO (Q60467) Collagen alpha-1(V) chain precursor	29	4.5
69	CO5A1_MOUSE (O88207) Collagen alpha-1(V) chain precursor	29	4.5
70	CO5A1_HUMAN (P20908) Collagen alpha-1(V) chain precursor	29	4.5
71	MMPL3_MYCTU (O53657) Putative membrane protein mmpL3	29	4.5
72	FOXD4_HUMAN (Q12950) Forkhead box protein D4 (Forkhead-related p...	29	4.5
73	PRP2_MOUSE (P05142) Proline-rich protein MP-2 precursor	29	4.5
74	PROB_PHOLL (Q7N7B2) Glutamate 5-kinase (EC 2.7.2.11) (Gamma-glut...	29	4.5
75	PMP3_MOUSE (P05143) Proline-rich protein MP-3 (Fragment)	29	4.5
76	PP1RA_MACMU (Q5TM61) Serine/threonine-protein phosphatase 1 regu...	29	4.5
77	NAPB_PARPN (Q56351) Diheme cytochrome c napB precursor (Cytochro...	29	4.5
78	LSM7_MOUSE (Q9CQQ8) U6 snRNA-associated Sm-like protein LSm7	29	4.5
79	RUXE_MOUSE (P62305) Small nuclear ribonucleoprotein E (snRNP-E) ...	29	5.9
80	RUXE_HUMAN (P62304) Small nuclear ribonucleoprotein E (snRNP-E) ...	29	5.9
81	RUXE_CHICK (P62303) Small nuclear ribonucleoprotein E (snRNP-E) ...	29	5.9
82	RUXE_BRARE (Q7ZUG0) Small nuclear ribonucleoprotein E (snRNP-E) ...	29	5.9
83	LSM7_HUMAN (Q9UK45) U6 snRNA-associated Sm-like protein LSm7	29	5.9
84	TOP3B_MOUSE (Q9Z321) DNA topoisomerase 3-beta-1 (EC 5.99.1.2) (D...	29	5.9
85	EFS_MOUSE (Q64355) Embryonal Fyn-associated substrate (SRC-inter...	29	5.9
86	KLK9_HUMAN (Q9UKQ9) Kallikrein-9 precursor (EC 3.4.21.-) (Kallik...	29	5.9
87	IE63_HHV1E (P36295) Transcriptional regulator IE63 (VMW63) (ICP27)	29	5.9
88	IE63_HHV11 (P10238) Transcriptional regulator IE63 (VMW63) (ICP27)	29	5.9
89	SRRM1_CHICK (Q5ZMJ9) Serine/arginine repetitive matrix protein 1	29	5.9
90	SYN1_MOUSE (O88935) Synapsin-1 (Synapsin I)	28	7.7
91	EFS_HUMAN (O43281) Embryonal Fyn-associated substrate (HEFS)	28	7.7
92	CO2A1_HUMAN (P02458) Collagen alpha-1(II) chain precursor [Conta...	28	7.7
93	SPTN4_HUMAN (Q9H254) Spectrin beta chain, brain 3 (Spectrin, non...	28	7.7
94	RP3A_RAT (P47709) Rabphilin-3A (Exophilin-1)	28	7.7
95	CO2A1_BOVIN (P02459) Collagen alpha-1(II) chain precursor (Fragm...	28	7.7
96	SF3B4_HUMAN (Q15427) Splicing factor 3B subunit 4 (Spliceosome-a...	28	7.7
97	SMD2_YEAST (Q06217) Small nuclear ribonucleoprotein Sm D2 (snRNP...	28	7.7
98	TRS1_HCMVA (P09695) Protein HHLF1	28	7.7
99	IRS1_HCMVA (P09715) Protein IRS1 (HQRF1)	28	7.7
100	LSM1_MOUSE (Q8VC85) U6 snRNA-associated Sm-like protein LSm1	28	7.7
101	LSM1_HUMAN (O15116) U6 snRNA-associated Sm-like protein LSm1 (Sm...	28	7.7

>RSMB_DROME (Q05856) Small nuclear ribonucleoprotein-associated protein B|
           (snRNP-B) (Sm protein B) (Sm-B) (SmB)
          Length = 199

 Score = 89.0 bits (219), Expect = 5e-18
 Identities = 45/92 (48%), Positives = 60/92 (65%)
 Frame = +3

Query: 78  MSNPKGSKMLQFVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPSKSSKXX 257
           M+  K +KM+Q +NYR+R+ +QD R  +G F AFD+HMNL+LGDCEEFRK+  SK+SK  
Sbjct: 1   MTIGKNNKMIQHLNYRVRIVLQDSRTFIGTFKAFDKHMNLILGDCEEFRKI-RSKNSK-V 58

Query: 258 XXXXXXXXXXXXXXXXXXVVSMTVEGPPPPDE 353
                             +VS+TVEGPPPP+E
Sbjct: 59  PEREEKRVLGFVLLRGENIVSLTVEGPPPPEE 90

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>RSMB_MOUSE (P27048) Small nuclear ribonucleoprotein-associated protein B|
           (snRNP-B) (Sm protein B) (Sm-B) (SmB)
          Length = 231

 Score = 86.3 bits (212), Expect = 3e-17
 Identities = 44/91 (48%), Positives = 55/91 (60%)
 Frame = +3

Query: 78  MSNPKGSKMLQFVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPSKSSKXX 257
           M+  K SKMLQ ++YRMR  +QDGR  +G F AFD+HMNL+L DC+EFRK+ P  S +  
Sbjct: 1   MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQ-- 58

Query: 258 XXXXXXXXXXXXXXXXXXVVSMTVEGPPPPD 350
                             +VSMTVEGPPP D
Sbjct: 59  AEREEKRVLGLVLLRGENLVSMTVEGPPPKD 89

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>RSMB_HUMAN (P14678) Small nuclear ribonucleoprotein-associated proteins B and|
           B' (snRNP-B) (Sm protein B/B') (Sm-B/Sm-B') (SmB/SmB')
          Length = 240

 Score = 86.3 bits (212), Expect = 3e-17
 Identities = 44/91 (48%), Positives = 55/91 (60%)
 Frame = +3

Query: 78  MSNPKGSKMLQFVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPSKSSKXX 257
           M+  K SKMLQ ++YRMR  +QDGR  +G F AFD+HMNL+L DC+EFRK+ P  S +  
Sbjct: 1   MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQ-- 58

Query: 258 XXXXXXXXXXXXXXXXXXVVSMTVEGPPPPD 350
                             +VSMTVEGPPP D
Sbjct: 59  AEREEKRVLGLVLLRGENLVSMTVEGPPPKD 89

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>RSMB_ERIEU (Q9TU67) Small nuclear ribonucleoprotein-associated protein B'|
           (snRNP-B') (Sm protein B') (Sm-B') (SmB') (snRPB')
          Length = 240

 Score = 86.3 bits (212), Expect = 3e-17
 Identities = 44/91 (48%), Positives = 55/91 (60%)
 Frame = +3

Query: 78  MSNPKGSKMLQFVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPSKSSKXX 257
           M+  K SKMLQ ++YRMR  +QDGR  +G F AFD+HMNL+L DC+EFRK+ P  S +  
Sbjct: 1   MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQ-- 58

Query: 258 XXXXXXXXXXXXXXXXXXVVSMTVEGPPPPD 350
                             +VSMTVEGPPP D
Sbjct: 59  AEREEKRVLGLVLLRGENLVSMTVEGPPPKD 89

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>RSMB_CHICK (Q9PV94) Small nuclear ribonucleoprotein-associated protein B'|
           (snRNP-B') (Sm protein B') (Sm-B') (SmB') (snRPB')
          Length = 240

 Score = 85.9 bits (211), Expect = 4e-17
 Identities = 44/91 (48%), Positives = 55/91 (60%)
 Frame = +3

Query: 78  MSNPKGSKMLQFVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPSKSSKXX 257
           M+  K SKMLQ ++YRMR  +QDGR  +G F AFD+HMNL+L DC+EFRK+ P  S +  
Sbjct: 1   MTVGKSSKMLQHIDYRMRCILQDGRVFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQ-- 58

Query: 258 XXXXXXXXXXXXXXXXXXVVSMTVEGPPPPD 350
                             +VSMTVEGPPP D
Sbjct: 59  PEREEKRVLGLVLLRGENLVSMTVEGPPPKD 89

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>RSMN_RAT (P63164) Small nuclear ribonucleoprotein-associated protein N|
           (snRNP-N) (Sm protein N) (Sm-N) (SmN) (Sm-D)
          Length = 240

 Score = 84.3 bits (207), Expect = 1e-16
 Identities = 43/91 (47%), Positives = 55/91 (60%)
 Frame = +3

Query: 78  MSNPKGSKMLQFVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPSKSSKXX 257
           M+  K SKMLQ ++YRMR  +QDGR  +G F AFD+HMNL+L DC+EFRK+ P  + +  
Sbjct: 1   MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQ-- 58

Query: 258 XXXXXXXXXXXXXXXXXXVVSMTVEGPPPPD 350
                             +VSMTVEGPPP D
Sbjct: 59  PEREEKRVLGLVLLRGENLVSMTVEGPPPKD 89

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>RSMN_MOUSE (P63163) Small nuclear ribonucleoprotein-associated protein N|
           (snRNP-N) (Sm protein N) (Sm-N) (SmN) (Sm-D)
           (Tissue-specific splicing protein)
          Length = 240

 Score = 84.3 bits (207), Expect = 1e-16
 Identities = 43/91 (47%), Positives = 55/91 (60%)
 Frame = +3

Query: 78  MSNPKGSKMLQFVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPSKSSKXX 257
           M+  K SKMLQ ++YRMR  +QDGR  +G F AFD+HMNL+L DC+EFRK+ P  + +  
Sbjct: 1   MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQ-- 58

Query: 258 XXXXXXXXXXXXXXXXXXVVSMTVEGPPPPD 350
                             +VSMTVEGPPP D
Sbjct: 59  PEREEKRVLGLVLLRGENLVSMTVEGPPPKD 89

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>RSMN_HUMAN (P63162) Small nuclear ribonucleoprotein-associated protein N|
           (snRNP-N) (Sm protein N) (Sm-N) (SmN) (Sm-D)
           (Tissue-specific splicing protein)
          Length = 240

 Score = 84.3 bits (207), Expect = 1e-16
 Identities = 43/91 (47%), Positives = 55/91 (60%)
 Frame = +3

Query: 78  MSNPKGSKMLQFVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPSKSSKXX 257
           M+  K SKMLQ ++YRMR  +QDGR  +G F AFD+HMNL+L DC+EFRK+ P  + +  
Sbjct: 1   MTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQ-- 58

Query: 258 XXXXXXXXXXXXXXXXXXVVSMTVEGPPPPD 350
                             +VSMTVEGPPP D
Sbjct: 59  PEREEKRVLGLVLLRGENLVSMTVEGPPPKD 89

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>RSMB_MONDO (Q9TU66) Small nuclear ribonucleoprotein-associated protein B'|
           (snRNP-B') (Sm protein B') (Sm-B') (SmB') (snRPB')
          Length = 240

 Score = 82.8 bits (203), Expect = 3e-16
 Identities = 43/91 (47%), Positives = 54/91 (59%)
 Frame = +3

Query: 78  MSNPKGSKMLQFVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPSKSSKXX 257
           M+  K SKMLQ ++ RMR  +QDGR  +G F AFD+HMNL+L DC+EFRK+ P  S +  
Sbjct: 1   MTVGKSSKMLQHIDCRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQ-- 58

Query: 258 XXXXXXXXXXXXXXXXXXVVSMTVEGPPPPD 350
                             +VSMTVEGPPP D
Sbjct: 59  AEREEKRVLGLVLLRGENLVSMTVEGPPPKD 89

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>RSMB_CAEEL (P91918) Probable small nuclear ribonucleoprotein associated|
           protein B (snRNP-B) (Sm protein B) (Sm-B) (SmB)
          Length = 160

 Score = 78.6 bits (192), Expect = 7e-15
 Identities = 37/92 (40%), Positives = 54/92 (58%)
 Frame = +3

Query: 78  MSNPKGSKMLQFVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPSKSSKXX 257
           M+  K +KM+  +NYRM++ +QDGR  +G F AFD+HMN++L +CEE R++ P    K  
Sbjct: 1   MTISKNNKMMAHLNYRMKIILQDGRTFIGFFKAFDKHMNILLAECEEHRQIKPKAGKK-- 58

Query: 258 XXXXXXXXXXXXXXXXXXVVSMTVEGPPPPDE 353
                             +VSMTV+GPPP D+
Sbjct: 59  TDGEEKRILGLVLVRGEHIVSMTVDGPPPRDD 90

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>RSMB_RAT (P17136) Small nuclear ribonucleoprotein-associated protein B|
           (snRNP-B) (Sm protein B) (Sm-B) (SmB) (SM11) (Fragment)
          Length = 214

 Score = 64.7 bits (156), Expect = 1e-10
 Identities = 32/72 (44%), Positives = 42/72 (58%)
 Frame = +3

Query: 135 TIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPSKSSKXXXXXXXXXXXXXXXXXXXXV 314
           ++Q+GR  +G F AFD+HMNL+L DC+EFRK+ P  S +                    +
Sbjct: 3   SLQNGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQ--AEREEKRVLGLVLLRGENL 60

Query: 315 VSMTVEGPPPPD 350
           VSMTVEGPPP D
Sbjct: 61  VSMTVEGPPPKD 72

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>YAU8_SCHPO (Q10163) Hypothetical protein C26A3.08 in chromosome I|
          Length = 147

 Score = 60.8 bits (146), Expect = 1e-09
 Identities = 30/85 (35%), Positives = 47/85 (55%)
 Frame = +3

Query: 96  SKMLQFVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPSKSSKXXXXXXXX 275
           +KM+  +N+ + VT +DGR  VG+ +AFD  MNLVL DC+E+R +   ++          
Sbjct: 4   TKMVSLLNHSLNVTTKDGRTFVGQLLAFDGFMNLVLSDCQEYRHI-KKQNVPSNSVYEEK 62

Query: 276 XXXXXXXXXXXXVVSMTVEGPPPPD 350
                       +VS++V+GPPP D
Sbjct: 63  RMLGLVILRGEFIVSLSVQGPPPMD 87

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>RSMB_YEAST (P40018) Small nuclear ribonucleoprotein-associated protein B|
           (snRNP-B) (Sm protein B) (Sm-B) (SmB)
          Length = 196

 Score = 57.0 bits (136), Expect = 2e-08
 Identities = 28/59 (47%), Positives = 38/59 (64%), Gaps = 7/59 (11%)
 Frame = +3

Query: 96  SKMLQFVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFR-------KLPPSKSSK 251
           S++   ++Y++RV  QDGR  +G+ MAFD+HMNLVL +C E R       KL P K SK
Sbjct: 10  SRLANLIDYKLRVLTQDGRVYIGQLMAFDKHMNLVLNECIEERVPKTQLDKLRPRKDSK 68

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>IF2_DESPS (Q6AJY4) Translation initiation factor IF-2|
          Length = 939

 Score = 36.6 bits (83), Expect = 0.028
 Identities = 25/67 (37%), Positives = 32/67 (47%), Gaps = 8/67 (11%)
 Frame = +2

Query: 116 QLPDARDHPGRP---PTRGEVHGLRSPHEPRPRRLRGVPQAPALKI--FQD---HRRARG 271
           +LP  R+ P RP   PTR  V+    P  P P R  G P  PA      QD   +R+ +G
Sbjct: 240 ELPIQREEPSRPRRKPTRPPVNRSPRPSTPSPNRSAGGPPKPAAPATPAQDDSRNRKKKG 299

Query: 272 AEDARPA 292
             D +PA
Sbjct: 300 RRDEKPA 306

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>RUXX_AERPE (Q9YEQ5) Putative snRNP Sm-like protein|
          Length = 77

 Score = 36.6 bits (83), Expect = 0.028
 Identities = 14/39 (35%), Positives = 26/39 (66%)
 Frame = +3

Query: 102 MLQFVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE 218
           ML +V+  + V ++ G ++ G    +D+H+N++LGD EE
Sbjct: 13  MLDYVDTPVLVKLKSGLRIKGVLKTYDQHLNIILGDAEE 51

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>LSM3_MOUSE (P62311) U6 snRNA-associated Sm-like protein LSm3|
          Length = 101

 Score = 36.6 bits (83), Expect = 0.028
 Identities = 14/32 (43%), Positives = 25/32 (78%)
 Frame = +3

Query: 123 RMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE 218
           R+ V +++ R+L G+  A+D+H+N++LGD EE
Sbjct: 27  RIYVKMRNDRELRGRLHAYDQHLNMILGDVEE 58

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>LSM3_HUMAN (P62310) U6 snRNA-associated Sm-like protein LSm3|
          Length = 101

 Score = 36.6 bits (83), Expect = 0.028
 Identities = 14/32 (43%), Positives = 25/32 (78%)
 Frame = +3

Query: 123 RMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE 218
           R+ V +++ R+L G+  A+D+H+N++LGD EE
Sbjct: 27  RIYVKMRNDRELRGRLHAYDQHLNMILGDVEE 58

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>LSM1_YEAST (P47017) Sm-like protein LSm1 (SPB8 protein)|
          Length = 172

 Score = 35.0 bits (79), Expect = 0.082
 Identities = 15/35 (42%), Positives = 23/35 (65%)
 Frame = +3

Query: 114 VNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE 218
           V+ ++ V ++DGR L G    FD++ NL+L DC E
Sbjct: 50  VDRKIFVLLRDGRMLFGVLRTFDQYANLILQDCVE 84

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>LSM3_SCHPO (Q9Y7M4) Probable U6 snRNA-associated Sm-like protein LSm3|
          Length = 93

 Score = 35.0 bits (79), Expect = 0.082
 Identities = 14/29 (48%), Positives = 21/29 (72%)
 Frame = +3

Query: 132 VTIQDGRQLVGKFMAFDRHMNLVLGDCEE 218
           V ++  R+L G+  A+D H+N+VLGD EE
Sbjct: 24  VKLRGDRELNGRLHAYDEHLNMVLGDAEE 52

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>CWC22_NEUCR (Q7RX84) Pre-mRNA-splicing factor cwc-22|
          Length = 1010

 Score = 34.7 bits (78), Expect = 0.11
 Identities = 26/85 (30%), Positives = 37/85 (43%), Gaps = 6/85 (7%)
 Frame = +2

Query: 113 RQLPDARDHPGR-----PPTRGEVHGL-RSPHEPRPRRLRGVPQAPALKIFQDHRRARGA 274
           R L   +D  GR     PP RG      R+P   R R  R   ++ +  + +   R R  
Sbjct: 736 RSLTPRKDTRGRSLSRTPPRRGRGRSYSRTPSRSRSRS-RSYSRSVSKSVSRSPPRRRAV 794

Query: 275 EDARPAPSPWRGGRLHDRRGPAPAR 349
           E   P+P P   GR +DR   +P+R
Sbjct: 795 ESRSPSPPPRGRGRSYDRYSRSPSR 819



 Score = 32.3 bits (72), Expect = 0.53
 Identities = 28/86 (32%), Positives = 32/86 (37%), Gaps = 4/86 (4%)
 Frame = +2

Query: 104  APVRQLPDARDHPGRPPTRGEVHGLRSPHEPRPRRLRGVPQAPALKIFQDHRRARGAEDA 283
            APV     A    G+    G     RSPH P  +RL               RR   +   
Sbjct: 865  APVSNNDRAAAASGKRRREGSYSASRSPHPPPQQRL---------------RRGSYSRSR 909

Query: 284  RPAPSPWRG----GRLHDRRGPAPAR 349
              +P P RG    GR   R GPAPAR
Sbjct: 910  SRSPIPIRGNGPAGRDTGRAGPAPAR 935

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>LAS17_YEAST (Q12446) Proline-rich protein LAS17|
          Length = 633

 Score = 34.7 bits (78), Expect = 0.11
 Identities = 27/87 (31%), Positives = 36/87 (41%), Gaps = 5/87 (5%)
 Frame = +2

Query: 98  ENAPVRQLPDARDHPGRPP----TRGEVHGLRSP-HEPRPRRLRGVPQAPALKIFQDHRR 262
           +N P+ QLP+  + P  PP    T  E  G+R P   P PRR    P  P   +  +   
Sbjct: 309 QNRPLPQLPNRNNRPVPPPPPMRTTTEGSGVRLPAPPPPPRRGPAPPPPPHRHVTSNTLN 368

Query: 263 ARGAEDARPAPSPWRGGRLHDRRGPAP 343
           + G     P  +         RRGPAP
Sbjct: 369 SAGGNSLLPQAT--------GRRGPAP 387

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>CSTF2_PONPY (Q5RDA3) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa|
           subunit) (CF-1 64 kDa subunit) (CstF-64)
          Length = 577

 Score = 33.5 bits (75), Expect = 0.24
 Identities = 29/85 (34%), Positives = 32/85 (37%)
 Frame = +2

Query: 80  VEPQGFENAPVRQLPDARDHPGRPPTRGEVHGLRSPHEPRPRRLRGVPQAPALKIFQDHR 259
           VEP+G+   P  Q P     PG        H LR    P PR L   P+ P L       
Sbjct: 341 VEPRGYLGPP-HQGPPMHHVPGHESRGPPPHELRGGPLPEPRPLMAEPRGPML------- 392

Query: 260 RARGAEDARPAPSPWRGGRLHDRRG 334
                 D R  P   RGGR  D RG
Sbjct: 393 ------DQRGPPLDGRGGR--DPRG 409

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>CSTF2_HUMAN (P33240) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa|
           subunit) (CF-1 64 kDa subunit) (CstF-64)
          Length = 577

 Score = 33.5 bits (75), Expect = 0.24
 Identities = 29/85 (34%), Positives = 32/85 (37%)
 Frame = +2

Query: 80  VEPQGFENAPVRQLPDARDHPGRPPTRGEVHGLRSPHEPRPRRLRGVPQAPALKIFQDHR 259
           VEP+G+   P  Q P     PG        H LR    P PR L   P+ P L       
Sbjct: 341 VEPRGYLGPP-HQGPPMHHVPGHESRGPPPHELRGGPLPEPRPLMAEPRGPML------- 392

Query: 260 RARGAEDARPAPSPWRGGRLHDRRG 334
                 D R  P   RGGR  D RG
Sbjct: 393 ------DQRGPPLDGRGGR--DPRG 409

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>RBM15_HUMAN (Q96T37) Putative RNA-binding protein 15 (RNA-binding motif protein|
           15) (One-twenty two protein)
          Length = 977

 Score = 33.1 bits (74), Expect = 0.31
 Identities = 27/83 (32%), Positives = 36/83 (43%), Gaps = 9/83 (10%)
 Frame = +2

Query: 113 RQLPDARDHPGR---PPTRGEVHGLRSPHEPRPRRLRGVP---QAPALKIFQDHRRARGA 274
           R LP +RD P +   P   G  H  RSP   RPR+    P   ++P L   +D   +   
Sbjct: 630 RDLPSSRDQPRKRRLPEESGGRHLDRSPESDRPRKRHCAPSPDRSPELSSSRDRYNSDND 689

Query: 275 EDAR---PAPSPWRGGRLHDRRG 334
             +R     PSP     + DRRG
Sbjct: 690 RSSRLLLERPSP-----IRDRRG 707

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>CSTFT_MOUSE (Q8C7E9) Cleavage stimulation factor, 64 kDa subunit, tau variant|
           (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit,
           tau variant) (TauCstF-64)
          Length = 632

 Score = 33.1 bits (74), Expect = 0.31
 Identities = 24/79 (30%), Positives = 31/79 (39%)
 Frame = +2

Query: 80  VEPQGFENAPVRQLPDARDHPGRPPTRGEVHGLRSPHEPRPRRLRGVPQAPALKIFQDHR 259
           VEP+G+   P +  P    H  R P   ++ G   P    PR L G P+ P +       
Sbjct: 360 VEPRGYMGPPHQGPPMHHGHDNRGPASHDMRG--GPLAADPRMLIGEPRGPMI------- 410

Query: 260 RARGAEDARPAPSPWRGGR 316
                 D R  P   RGGR
Sbjct: 411 ------DQRGLPMDGRGGR 423

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>CWC22_CRYNE (Q5KFX4) Pre-mRNA-splicing factor CWC22|
          Length = 831

 Score = 33.1 bits (74), Expect = 0.31
 Identities = 23/77 (29%), Positives = 31/77 (40%)
 Frame = +2

Query: 113 RQLPDARDHPGRPPTRGEVHGLRSPHEPRPRRLRGVPQAPALKIFQDHRRARGAEDARPA 292
           R+  D    P  PP R      RSP  P  RR     ++P+      HRR    +   P+
Sbjct: 753 RRYSDDSRSPSPPPRRRYSGDSRSPSPPPRRRYADDSRSPSPP---PHRRRYSDDSRSPS 809

Query: 293 PSPWRGGRLHDRRGPAP 343
           P P R     + R P+P
Sbjct: 810 PPPRRRRYSDNSRSPSP 826

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>PP1RA_PANTR (Q7YR38) Serine/threonine-protein phosphatase 1 regulatory subunit|
           10 (MHC class I region proline-rich protein CAT53)
           (Protein FB19)
          Length = 940

 Score = 33.1 bits (74), Expect = 0.31
 Identities = 37/129 (28%), Positives = 44/129 (34%), Gaps = 12/129 (9%)
 Frame = +2

Query: 89  QGFENAPVRQLPDARDHPGRP----------PTRGEVHGLRSPHEP-RPRRLRGVPQAPA 235
           Q F   P   +P     PG P          P RG       P +P R   +RG P  P 
Sbjct: 641 QHFPPGPGGPMPGPHGGPGGPVGPRLLGPPPPPRGGDPFWDGPGDPMRGGPMRGGP-GPG 699

Query: 236 LKIFQDHRRARGAEDARPAPSPWRGGR-LHDRRGPAPAR*VPGQGLXXXXXXXXXXXXXX 412
              +   R  RG  +  P P P+RG R      GP   R  PG G+              
Sbjct: 700 PGPYHRGRGGRGGNEPPPPPPPFRGARGGRSGGGPPNGRGGPGGGMVGG----------- 748

Query: 413 CRPWGGHRP 439
               GGHRP
Sbjct: 749 ----GGHRP 753

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>PP1RA_HUMAN (Q96QC0) Serine/threonine-protein phosphatase 1 regulatory subunit|
           10 (Phosphatase 1 nuclear targeting subunit) (MHC class
           I region proline-rich protein CAT53) (FB19 protein)
           (PP1-binding protein of 114 kDa) (p99)
          Length = 940

 Score = 33.1 bits (74), Expect = 0.31
 Identities = 37/129 (28%), Positives = 44/129 (34%), Gaps = 12/129 (9%)
 Frame = +2

Query: 89  QGFENAPVRQLPDARDHPGRP----------PTRGEVHGLRSPHEP-RPRRLRGVPQAPA 235
           Q F   P   +P     PG P          P RG       P +P R   +RG P  P 
Sbjct: 641 QHFPPGPGGPMPGPHGGPGGPVGPRLLGPPPPPRGGDPFWDGPGDPMRGGPMRGGP-GPG 699

Query: 236 LKIFQDHRRARGAEDARPAPSPWRGGR-LHDRRGPAPAR*VPGQGLXXXXXXXXXXXXXX 412
              +   R  RG  +  P P P+RG R      GP   R  PG G+              
Sbjct: 700 PGPYHRGRGGRGGNEPPPPPPPFRGARGGRSGGGPPNGRGGPGGGMVGG----------- 748

Query: 413 CRPWGGHRP 439
               GGHRP
Sbjct: 749 ----GGHRP 753

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>LSM8_MOUSE (Q6ZWM4) U6 snRNA-associated Sm-like protein LSm8|
          Length = 95

 Score = 33.1 bits (74), Expect = 0.31
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +3

Query: 96  SKMLQFVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE 218
           S +  ++N  + V   DGR +VG    FD+ +NL+L +  E
Sbjct: 2   SALENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHE 42

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>LSM8_HUMAN (O95777) U6 snRNA-associated Sm-like protein LSm8|
          Length = 95

 Score = 33.1 bits (74), Expect = 0.31
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +3

Query: 96  SKMLQFVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE 218
           S +  ++N  + V   DGR +VG    FD+ +NL+L +  E
Sbjct: 2   SALENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHE 42

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>SMD2_CAEEL (Q18786) Probable small nuclear ribonucleoprotein Sm D2 (snRNP core|
           protein D2) (Sm-D2)
          Length = 118

 Score = 33.1 bits (74), Expect = 0.31
 Identities = 12/34 (35%), Positives = 25/34 (73%)
 Frame = +3

Query: 117 NYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE 218
           N+++ +  ++ ++L+G+  AFDRH N+VL + +E
Sbjct: 39  NHQVLINCRNNKKLLGRVKAFDRHCNMVLENVKE 72

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>PP1RA_PIG (Q767K9) Serine/threonine-protein phosphatase 1 regulatory subunit|
           10 (MHC class I region proline-rich protein CAT53)
           (Protein FB19)
          Length = 925

 Score = 32.7 bits (73), Expect = 0.41
 Identities = 31/99 (31%), Positives = 37/99 (37%), Gaps = 2/99 (2%)
 Frame = +2

Query: 149 PPTRGEVHGLRSPHEP-RPRRLRGVPQAPALKIFQDHRRARGAEDARPAPSPWRGGR-LH 322
           PP RG       P +P R   +RG P  P    +   R  RG  +  P P P+RG R   
Sbjct: 674 PPPRGGDPFWDGPGDPMRGGPMRGGP-GPGPGPYHRGRGGRGGNEPPPPPPPFRGARGGR 732

Query: 323 DRRGPAPAR*VPGQGLXXXXXXXXXXXXXXCRPWGGHRP 439
              GP   R  PG G+                  GGHRP
Sbjct: 733 SGGGPPNGRGGPGGGMVGG---------------GGHRP 756

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>SMD2_MOUSE (P62317) Small nuclear ribonucleoprotein Sm D2 (snRNP core protein|
           D2) (Sm-D2)
          Length = 118

 Score = 32.7 bits (73), Expect = 0.41
 Identities = 15/46 (32%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
 Frame = +3

Query: 117 NYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE-FRKLPPSKSSK 251
           N ++ +  ++ ++L+G+  AFDRH N+VL + +E + ++P S   K
Sbjct: 39  NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGK 84

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>SMD2_HUMAN (P62316) Small nuclear ribonucleoprotein Sm D2 (snRNP core protein|
           D2) (Sm-D2)
          Length = 118

 Score = 32.7 bits (73), Expect = 0.41
 Identities = 15/46 (32%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
 Frame = +3

Query: 117 NYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE-FRKLPPSKSSK 251
           N ++ +  ++ ++L+G+  AFDRH N+VL + +E + ++P S   K
Sbjct: 39  NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGK 84

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>LSM3_YEAST (P57743) U6 snRNA-associated Sm-like protein LSm3 (SmX4 protein)|
          Length = 89

 Score = 32.3 bits (72), Expect = 0.53
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +3

Query: 123 RMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE 218
           R+ + ++  R LVG   AFD H N+VL D  E
Sbjct: 15  RVYIKLRGARTLVGTLQAFDSHCNIVLSDAVE 46

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>AFSK_STRGR (P54742) Serine/threonine protein kinase afsK (EC 2.7.11.1)|
          Length = 807

 Score = 32.3 bits (72), Expect = 0.53
 Identities = 19/47 (40%), Positives = 21/47 (44%)
 Frame = +2

Query: 158 RGEVHGLRSPHEPRPRRLRGVPQAPALKIFQDHRRARGAEDARPAPS 298
           RG     R P  PRPRRLR  PQ P       HR A+    A   P+
Sbjct: 297 RGGRRTARRPPRPRPRRLRAAPQGPG----AGHRLAQRGRPAFALPA 339

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>IF2_STRAW (Q82K53) Translation initiation factor IF-2|
          Length = 1046

 Score = 32.3 bits (72), Expect = 0.53
 Identities = 26/84 (30%), Positives = 30/84 (35%), Gaps = 6/84 (7%)
 Frame = +2

Query: 128 ARDHPGRPP-TRGEVHGLRSPHEPRPRRL-----RGVPQAPALKIFQDHRRARGAEDARP 289
           A   PG  P T G   G+  P  PRP         G P  P         +  G +D  P
Sbjct: 210 AGPRPGNNPFTSGGSTGMARPQAPRPGGAPRPGGAGAPGGP-------RPQGAGGQDRAP 262

Query: 290 APSPWRGGRLHDRRGPAPAR*VPG 361
            P    GG    + GP  AR  PG
Sbjct: 263 RPQGGPGGAPRPQGGPGGARPTPG 286

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>SMD2_DROME (Q9VI10) Probable small nuclear ribonucleoprotein Sm D2 (snRNP core|
           protein D2) (Sm-D2)
          Length = 119

 Score = 32.3 bits (72), Expect = 0.53
 Identities = 15/46 (32%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
 Frame = +3

Query: 117 NYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE-FRKLPPSKSSK 251
           N ++ +  ++ ++L+G+  AFDRH N+VL + +E + +LP +   K
Sbjct: 38  NTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKGK 83

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>NMDE4_HUMAN (O15399) Glutamate [NMDA] receptor subunit epsilon 4 precursor|
            (N-methyl D-aspartate receptor subtype 2D) (NR2D)
            (NMDAR2D) (EB11)
          Length = 1336

 Score = 32.0 bits (71), Expect = 0.70
 Identities = 25/76 (32%), Positives = 28/76 (36%), Gaps = 4/76 (5%)
 Frame = +2

Query: 131  RDHPGRPPTRGEVHGLRSPHEPRPRRLRG----VPQAPALKIFQDHRRARGAEDARPAPS 298
            R HP RP          +PH  R RR  G     P AP  +  +D      A  AR    
Sbjct: 1230 RSHPHRPRASHRTPAAAAPHHHRHRRAAGGWDLPPPAPTSRSLEDLSSCPRAAPARRLTG 1289

Query: 299  PWRGGRLHDRRGPAPA 346
            P R    H RR P  A
Sbjct: 1290 PSR----HARRCPHAA 1301

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>CD2_HORSE (P37998) T-cell surface antigen CD2 precursor|
          Length = 347

 Score = 32.0 bits (71), Expect = 0.70
 Identities = 19/66 (28%), Positives = 27/66 (40%)
 Frame = +2

Query: 140 PGRPPTRGEVHGLRSPHEPRPRRLRGVPQAPALKIFQDHRRARGAEDARPAPSPWRGGRL 319
           PG  P          P   RP+     PQ P  +      R +  +  RPAP+P  G + 
Sbjct: 265 PGSTPLNPAASQPPPPPSHRPQAPGHRPQVPGHRPLPPGHRVQHQQQKRPAPTP--GTQA 322

Query: 320 HDRRGP 337
           H ++GP
Sbjct: 323 HQQKGP 328

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>XP2_XENLA (P17437) Skin secretory protein xP2 precursor (APEG protein)|
          Length = 439

 Score = 32.0 bits (71), Expect = 0.70
 Identities = 32/102 (31%), Positives = 35/102 (34%), Gaps = 10/102 (9%)
 Frame = +2

Query: 92  GFENAPVRQLPDARDHPGRP---PTRGEVHGLRSPHEPRPRRLRGVPQAPALKIFQDHRR 262
           G E AP   +  A    G P   P  GE         P P    G   APA         
Sbjct: 26  GGEPAPAEGVAPAPAEGGAPAPAPAEGEAPAPAEGGAPAPAPAEGAEPAPADGGAPAPAP 85

Query: 263 ARG-------AEDARPAPSPWRGGRLHDRRGPAPAR*VPGQG 367
           A G       AE   PAP+P  GG      G APA   P +G
Sbjct: 86  AEGGAPAPAPAEGGAPAPAPAEGGAPAPAEGGAPAP-APAEG 126



 Score = 28.9 bits (63), Expect = 5.9
 Identities = 24/82 (29%), Positives = 27/82 (32%)
 Frame = +2

Query: 122 PDARDHPGRPPTRGEVHGLRSPHEPRPRRLRGVPQAPALKIFQDHRRARGAEDARPAPSP 301
           P   + P   P  GE           P    G   APA            AE   PAP+P
Sbjct: 263 PAEGEAPAPAPAEGEAPAPAPAEGEAPAPAEGEAPAPA-----------PAEGEAPAPAP 311

Query: 302 WRGGRLHDRRGPAPAR*VPGQG 367
             GG      G APA   P +G
Sbjct: 312 AEGGAPSPAEGGAPAA-APAEG 332

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>CO4A2_ASCSU (P27393) Collagen alpha-2(IV) chain precursor|
          Length = 1763

 Score = 32.0 bits (71), Expect = 0.70
 Identities = 33/112 (29%), Positives = 39/112 (34%), Gaps = 19/112 (16%)
 Frame = +2

Query: 86  PQGFENAPVRQLPDARDHPGRPPTRGEVHGLRSPHEPRPRR------------------- 208
           P+GF   P          PG P  +GE  GL  P  PR +                    
Sbjct: 274 PRGFPGTP-----GVAGQPGLPGMKGE-KGLSGPAGPRGKEGRPGLPGPPGFKGDRGLDG 327

Query: 209 LRGVPQAPALKIFQDHRRARGAEDARPAPSPWRGGRLHDRRGPAPAR*VPGQ 364
           L GVP  P  K         GA+ AR  P P  GG   D  GP     +PG+
Sbjct: 328 LPGVPGLPGQKGEAGFPGRDGAKGARGPPGPPGGGEFSD--GPPGPPGLPGR 377

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>RUXG_MOUSE (P62309) Small nuclear ribonucleoprotein G (snRNP-G) (Sm protein G)|
           (Sm-G) (SmG)
          Length = 76

 Score = 32.0 bits (71), Expect = 0.70
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = +3

Query: 78  MSNPKGSKMLQFVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE 218
           MS     ++ +F++ ++ + +  GR + G    FD  MNLV+ +C E
Sbjct: 1   MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVE 47

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>RUXG_HUMAN (P62308) Small nuclear ribonucleoprotein G (snRNP-G) (Sm protein G)|
           (Sm-G) (SmG)
          Length = 76

 Score = 32.0 bits (71), Expect = 0.70
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = +3

Query: 78  MSNPKGSKMLQFVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE 218
           MS     ++ +F++ ++ + +  GR + G    FD  MNLV+ +C E
Sbjct: 1   MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVE 47

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>LSM8_SCHPO (O74483) U6 snRNA-associated Sm-like protein LSm8|
          Length = 94

 Score = 32.0 bits (71), Expect = 0.70
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +3

Query: 102 MLQFVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE 218
           +  F+  R++V   DGR ++G    FD   NL+L D  E
Sbjct: 3   LADFMEQRVQVITNDGRVVLGSLKGFDHTTNLILSDSFE 41

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>LSM5_MOUSE (P62322) U6 snRNA-associated Sm-like protein LSm5|
          Length = 90

 Score = 32.0 bits (71), Expect = 0.70
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = +3

Query: 114 VNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPSK 242
           +  R+ + ++  +++VG  + FD  +N+VL D  EF   P  +
Sbjct: 21  IGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGR 63

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>LSM5_HUMAN (Q9Y4Y9) U6 snRNA-associated Sm-like protein LSm5|
          Length = 90

 Score = 32.0 bits (71), Expect = 0.70
 Identities = 12/43 (27%), Positives = 24/43 (55%)
 Frame = +3

Query: 114 VNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPSK 242
           +  R+ + ++  +++VG  + FD  +N+VL D  EF   P  +
Sbjct: 21  IGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGR 63

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>CDAN1_HUMAN (Q8IWY9) Codanin-1|
          Length = 1226

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 27/77 (35%), Positives = 31/77 (40%)
 Frame = +2

Query: 140 PGRPPTRGEVHGLRSPHEPRPRRLRGVPQAPALKIFQDHRRARGAEDARPAPSPWRGGRL 319
           P  PPT  +  G  +    RP    G P+       Q          A  AP   RGGR 
Sbjct: 66  PQGPPTPAKTPGASAALPGRPG---GPPRGSRGARSQLFPPTEAQSTAAEAPLARRGGR- 121

Query: 320 HDRRGPAPAR*VPGQGL 370
             RRGP PAR   G+GL
Sbjct: 122 --RRGPGPARERGGRGL 136

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>CO1A1_CHICK (P02457) Collagen alpha-1(I) chain precursor|
          Length = 1453

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 22/73 (30%), Positives = 29/73 (39%), Gaps = 1/73 (1%)
 Frame = +2

Query: 86  PQGFENAPVRQLPDAR-DHPGRPPTRGEVHGLRSPHEPRPRRLRGVPQAPALKIFQDHRR 262
           P+G    P +   D     PGRP  RG          P P+  RG+P    L   + HR 
Sbjct: 208 PRGPAGPPGKNGDDGEAGKPGRPGQRGP---------PGPQGARGLPGTAGLPGMKGHRG 258

Query: 263 ARGAEDARPAPSP 301
             G + A+  P P
Sbjct: 259 FSGLDGAKGQPGP 271

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>RUXX_METTH (O26745) Putative snRNP Sm-like protein|
          Length = 81

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +3

Query: 114 VNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE 218
           +N  + + ++  R+  G   +FD HMNLVL D EE
Sbjct: 22  LNSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEE 56

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>MAK31_YEAST (P23059) Protein MAK31 (Maintenance of killer protein 31)|
          Length = 88

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = +3

Query: 99  KMLQFVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE 218
           K+  F+   + V++ + R LVG  +A D  MNL+L   EE
Sbjct: 5   KLSDFIGNTLIVSLTEDRILVGSLVAVDAQMNLLLDHVEE 44

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>RUXX_METMA (Q8PZZ9) Putative snRNP Sm-like protein|
          Length = 72

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +3

Query: 132 VTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRK 227
           V ++  R+  G+   +D HMNLVL + EE R+
Sbjct: 19  VRLKGAREFRGELKGYDIHMNLVLDNAEELRE 50

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>RUXX_METAC (Q8TL47) Putative snRNP Sm-like protein|
          Length = 72

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +3

Query: 132 VTIQDGRQLVGKFMAFDRHMNLVLGDCEEFR 224
           V ++  R+  G+   +D HMNLVL + EE R
Sbjct: 19  VRLKGAREFRGELKGYDIHMNLVLDNAEELR 49

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>RUXX_ARCFU (O29386) Putative snRNP Sm-like protein|
          Length = 77

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +3

Query: 132 VTIQDGRQLVGKFMAFDRHMNLVLGDCEEFR 224
           V ++ GR+  G    +D HMNLVL D EE +
Sbjct: 19  VRLKGGREFRGTLDGYDIHMNLVLLDAEEIQ 49

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>RUXG_DROME (Q9VXE0) Probable small nuclear ribonucleoprotein G (snRNP-G) (Sm|
           protein G) (Sm-G) (SmG)
          Length = 76

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +3

Query: 78  MSNPKGSKMLQFVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE 218
           MS     ++ ++++ RM + +  GR + G    FD  MN+VL D  E
Sbjct: 1   MSKAHPPEVKKYMDKRMMLKLNGGRAVTGILRGFDPFMNVVLDDTVE 47

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>RP3A_MOUSE (P47708) Rabphilin-3A (Exophilin-1)|
          Length = 681

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 28/107 (26%), Positives = 39/107 (36%), Gaps = 34/107 (31%)
 Frame = +2

Query: 83  EPQGFENAPVRQLPDARDHPGRPPTRGEVHGLRSP----------------HEPRPRRLR 214
           +P G      +  P++R HP R P RG++   R P                H P  RR  
Sbjct: 176 QPAGEPATQEQPTPESR-HPARAPARGDMEDRRPPGQKPGPDLTSAPGRGSHGPPTRRAS 234

Query: 215 GVPQAPALKIFQ--DH----------------RRARGAEDARPAPSP 301
               + A +  +  DH                RRA   + ARPAP+P
Sbjct: 235 EARMSTAARDSEGWDHAHGGGTGDTSRSPAGLRRANSVQAARPAPAP 281

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>CAC1A_MOUSE (P97445) Voltage-dependent P/Q-type calcium channel alpha-1A|
           subunit (Voltage-gated calcium channel alpha subunit
           Cav2.1) (Calcium channel, L type, alpha-1 polypeptide
           isoform 4) (Brain calcium channel I) (BI)
          Length = 2164

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 20/53 (37%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
 Frame = -1

Query: 444 AAGRWPPHGRQRDXXXXXXXXXXXXRPWPG-THRAGAG--PRRSWRRPPRHGE 295
           A GR  P+GR+ +             PW   T RA AG  PRR   RP   GE
Sbjct: 823 APGREGPYGRESELQQREHAPPREHAPWDADTERAKAGDAPRRHTHRPVAEGE 875

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>YB18_SCHPO (P87173) Hypothetical protein C3D6.08c in chromosome II|
          Length = 140

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 11/34 (32%), Positives = 25/34 (73%)
 Frame = +3

Query: 102 MLQFVNYRMRVTIQDGRQLVGKFMAFDRHMNLVL 203
           ++ +V+ ++ V ++DG++L+G   +FD+  NL+L
Sbjct: 16  LVDYVDRKVIVVLRDGKKLIGILRSFDQFANLML 49

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>YBX2A_XENLA (P21574) Y-box-binding protein 2-A (Cytoplasmic RNA-binding protein|
           p56) (mRNP4)
          Length = 336

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 24/76 (31%), Positives = 28/76 (36%)
 Frame = +2

Query: 104 APVRQLPDARDHPGRPPTRGEVHGLRSPHEPRPRRLRGVPQAPALKIFQDHRRARGAEDA 283
           AP  +   + D P RPP R      R P  PRP       Q P  +      +A   ED 
Sbjct: 209 APTSEALASGDDPQRPPPRRFRQRFRRPFRPRP----APQQTP--EGGDGEAKAESGEDP 262

Query: 284 RPAPSPWRGGRLHDRR 331
           RP P   R      RR
Sbjct: 263 RPEPQRQRNRPYVQRR 278

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>ROBO3_HUMAN (Q96MS0) Roundabout homolog 3 precursor (Roundabout-like protein 3)|
          Length = 1386

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 15/39 (38%), Positives = 17/39 (43%)
 Frame = +2

Query: 86   PQGFENAPVRQLPDARDHPGRPPTRGEVHGLRSPHEPRP 202
            P G   AP   L D+  HP R P+  E  G   P  P P
Sbjct: 951  PMGLGPAPYSWLADSWPHPSRSPSAQEPRGSCCPSNPDP 989

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>ENA_DROME (Q8T4F7) Protein enabled|
          Length = 834

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 27/80 (33%), Positives = 30/80 (37%)
 Frame = +2

Query: 122 PDARDHPGRPPTRGEVHGLRSPHEPRPRRLRGVPQAPALKIFQDHRRARGAEDARPAPSP 301
           P A   P  PP+ G   G   P    P+   G P  PA+          G   A PAP P
Sbjct: 553 PPAPAPPPPPPSFGGAAGGGPPPPAPPQMFNGAPPPPAM--------GGGPPPAPPAP-P 603

Query: 302 WRGGRLHDRRGPAPAR*VPG 361
             GG      GP PA   PG
Sbjct: 604 AMGG------GPPPAPGGPG 617

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>CAC1A_RAT (P54282) Voltage-dependent P/Q-type calcium channel alpha-1A subunit|
            (Voltage-gated calcium channel alpha subunit Cav2.1)
            (Calcium channel, L type, alpha-1 polypeptide, isoform 4)
            (Brain calcium channel I) (BI) (RAT brain class A)
            (RBA-I)
          Length = 2212

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 3/53 (5%)
 Frame = -1

Query: 444  AAGRWPPHGRQRDXXXXXXXXXXXXRPW---PGTHRAGAGPRRSWRRPPRHGE 295
            A GR  P+GR+ +             PW   P   +AG  PRR   RP   GE
Sbjct: 871  APGREGPYGRESEPQQREHAPPREHVPWDADPERAKAGDAPRRHTHRPVAEGE 923

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>SORC2_HUMAN (Q96PQ0) VPS10 domain-containing receptor SorCS2 precursor|
          Length = 1159

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 25/74 (33%), Positives = 29/74 (39%)
 Frame = +2

Query: 143 GRPPTRGEVHGLRSPHEPRPRRLRGVPQAPALKIFQDHRRARGAEDARPAPSPWRGGRLH 322
           GR P  G +     PH    R  R  P   A     + R+ARG E   P PSP       
Sbjct: 50  GRSPEPGRL----GPHAQLTRVPRSPPAGRAEPGGGEDRQARGTEPGAPGPSP------- 98

Query: 323 DRRGPAPAR*VPGQ 364
              GPAP    PG+
Sbjct: 99  ---GPAPG---PGE 106

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>K1543_HUMAN (Q9P1Y5) Protein KIAA1543|
          Length = 1249

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +2

Query: 86  PQGFENAPVRQLPDARDHPGRPPTRGEVHGLRSPHEPRPRRLRGVP 223
           P+    +P R++P  R  PG  P++      RSP   RP  LR  P
Sbjct: 752 PKAASPSPARRVPATRRSPGPGPSQSP----RSPKHTRPAELRLAP 793

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>CSTF2_BOVIN (Q8HXM1) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa|
           subunit) (CF-1 64 kDa subunit) (CstF-64)
          Length = 572

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 30/97 (30%), Positives = 37/97 (38%)
 Frame = +2

Query: 80  VEPQGFENAPVRQLPDARDHPGRPPTRGEVHGLRSPHEPRPRRLRGVPQAPALKIFQDHR 259
           VEP+G+   P  Q P     PG        H +R      PR L   P+ P +       
Sbjct: 341 VEPRGYLGPP-HQGPPMHHVPGHDSRGPPPHEMRGGPLTEPRPLMAEPRGPMI------- 392

Query: 260 RARGAEDARPAPSPWRGGRLHDRRGPAPAR*VPGQGL 370
                 D R  P   RGGR  D RG   AR +  +GL
Sbjct: 393 ------DQRGPPLDGRGGR--DPRG-IDARAMEARGL 420

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>NMDE4_RAT (Q62645) Glutamate [NMDA] receptor subunit epsilon 4 precursor|
            (N-methyl D-aspartate receptor subtype 2D) (NR2D)
            (NMDAR2D)
          Length = 1323

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 21/53 (39%), Positives = 22/53 (41%)
 Frame = +2

Query: 143  GRPPTRGEVHGLRSPHEPRPRRLRGVPQAPALKIFQDHRRARGAEDARPAPSP 301
            G PP R    G   PH  RPR     P   A      HRRA G  D  P P+P
Sbjct: 1205 GPPPRRRARCGCPRPHPHRPRASHRAP--AAAPHHHRHRRAAGGWDF-PPPAP 1254

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>CO5A1_RAT (Q9JI03) Collagen alpha-1(V) chain precursor|
          Length = 1840

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 26/75 (34%), Positives = 30/75 (40%), Gaps = 1/75 (1%)
 Frame = +2

Query: 92   GFENAPVRQLPDAR-DHPGRPPTRGEVHGLRSPHEPRPRRLRGVPQAPALKIFQDHRRAR 268
            G    P RQ P      PG P   GE  G  +P +P PR  RG P  P     +  R  R
Sbjct: 873  GLPGYPGRQGPKGSIGFPGFPGANGEKGGRGTPGKPGPRGQRG-PTGP-----RGERGPR 926

Query: 269  GAEDARPAPSPWRGG 313
            G    +P P    GG
Sbjct: 927  GI-TGKPGPKGNSGG 940

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>CO5A1_CRILO (Q60467) Collagen alpha-1(V) chain precursor|
          Length = 1840

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 26/75 (34%), Positives = 30/75 (40%), Gaps = 1/75 (1%)
 Frame = +2

Query: 92   GFENAPVRQLPDAR-DHPGRPPTRGEVHGLRSPHEPRPRRLRGVPQAPALKIFQDHRRAR 268
            G    P RQ P      PG P   GE  G  +P +P PR  RG P  P     +  R  R
Sbjct: 873  GLPGYPGRQGPKGSIGFPGFPGANGEKGGRGTPGKPGPRGQRG-PTGP-----RGERGPR 926

Query: 269  GAEDARPAPSPWRGG 313
            G    +P P    GG
Sbjct: 927  GI-TGKPGPKGNSGG 940

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>CO5A1_MOUSE (O88207) Collagen alpha-1(V) chain precursor|
          Length = 1838

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 26/75 (34%), Positives = 30/75 (40%), Gaps = 1/75 (1%)
 Frame = +2

Query: 92   GFENAPVRQLPDAR-DHPGRPPTRGEVHGLRSPHEPRPRRLRGVPQAPALKIFQDHRRAR 268
            G    P RQ P      PG P   GE  G  +P +P PR  RG P  P     +  R  R
Sbjct: 871  GLPGYPGRQGPKGSIGFPGFPGANGEKGGRGTPGKPGPRGQRG-PTGP-----RGERGPR 924

Query: 269  GAEDARPAPSPWRGG 313
            G    +P P    GG
Sbjct: 925  GI-TGKPGPKGNSGG 938

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>CO5A1_HUMAN (P20908) Collagen alpha-1(V) chain precursor|
          Length = 1838

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 26/75 (34%), Positives = 30/75 (40%), Gaps = 1/75 (1%)
 Frame = +2

Query: 92   GFENAPVRQLPDAR-DHPGRPPTRGEVHGLRSPHEPRPRRLRGVPQAPALKIFQDHRRAR 268
            G    P RQ P      PG P   GE  G  +P +P PR  RG P  P     +  R  R
Sbjct: 871  GLPGYPGRQGPKGSIGFPGFPGANGEKGGRGTPGKPGPRGQRG-PTGP-----RGERGPR 924

Query: 269  GAEDARPAPSPWRGG 313
            G    +P P    GG
Sbjct: 925  GI-TGKPGPKGNSGG 938

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>MMPL3_MYCTU (O53657) Putative membrane protein mmpL3|
          Length = 944

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 17/63 (26%), Positives = 27/63 (42%)
 Frame = +2

Query: 113 RQLPDARDHPGRPPTRGEVHGLRSPHEPRPRRLRGVPQAPALKIFQDHRRARGAEDARPA 292
           R+ P +   P RPP    +   R+  +PRP      P  P   + +  R AR +  + P 
Sbjct: 755 RKRPVSNGRPARPPVTAGLVAARAAGDPRP------PHDPTHPLAESPRPARSSPASSPE 808

Query: 293 PSP 301
            +P
Sbjct: 809 LTP 811

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>FOXD4_HUMAN (Q12950) Forkhead box protein D4 (Forkhead-related protein FKHL9)|
           (Forkhead-related transcription factor 5) (FREAC-5)
           (Myeloid factor-alpha)
          Length = 439

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 25/68 (36%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
 Frame = +2

Query: 104 APVRQLPDARDH--PGRPPTRGEVHGLRSPHEPRPRRLRGVPQAPALKIFQDHRRARGAE 277
           AP + +P A  +  PGR P     + L  PH PR   L     A A K      +A GA+
Sbjct: 237 APPQPVPGAYPNTGPGRRP-----YALLHPHPPRYLLLSAPAYAGAPK------KAEGAD 285

Query: 278 DARPAPSP 301
            A PAP P
Sbjct: 286 LATPAPFP 293

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>PRP2_MOUSE (P05142) Proline-rich protein MP-2 precursor|
          Length = 261

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 24/82 (29%), Positives = 30/82 (36%), Gaps = 6/82 (7%)
 Frame = +2

Query: 116 QLPDARDHPG----RPPTRGEVHGLRSPHEPRPRRLRGVPQAPALKIFQDHRRARGAEDA 283
           Q+P+ R  P     RPP  G   G   P  P+PR  +G P               G    
Sbjct: 28  QIPNQRPPPSGFQPRPPVNGSQQGPPPPGGPQPRPPQGPPPP-------------GGPQP 74

Query: 284 RP--APSPWRGGRLHDRRGPAP 343
           RP   P P  G +    +GP P
Sbjct: 75  RPPQGPPPPGGPQPRPPQGPPP 96

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>PROB_PHOLL (Q7N7B2) Glutamate 5-kinase (EC 2.7.2.11) (Gamma-glutamyl kinase)|
           (GK)
          Length = 368

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 20/44 (45%), Positives = 22/44 (50%)
 Frame = +2

Query: 152 PTRGEVHGLRSPHEPRPRRLRGVPQAPALKIFQDHRRARGAEDA 283
           P     HGL SP E R R + G P  PA +I  DH    GAE A
Sbjct: 251 PVGTRFHGLESPMENRKRWIFGAP--PAGEIIVDH----GAETA 288

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>PMP3_MOUSE (P05143) Proline-rich protein MP-3 (Fragment)|
          Length = 296

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 24/82 (29%), Positives = 30/82 (36%), Gaps = 6/82 (7%)
 Frame = +2

Query: 116 QLPDARDHPG----RPPTRGEVHGLRSPHEPRPRRLRGVPQAPALKIFQDHRRARGAEDA 283
           Q+P+ R  P     RPP  G   G   P  P+PR  +G P               G    
Sbjct: 7   QIPNQRPPPSGSQPRPPVNGSQQGPPPPGGPQPRPPQGPPPP-------------GGPQP 53

Query: 284 RP--APSPWRGGRLHDRRGPAP 343
           RP   P P  G +    +GP P
Sbjct: 54  RPPQGPPPPGGPQPRPPQGPPP 75

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>PP1RA_MACMU (Q5TM61) Serine/threonine-protein phosphatase 1 regulatory subunit|
           10 (MHC class I region proline-rich protein CAT53)
          Length = 940

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 38/130 (29%), Positives = 44/130 (33%), Gaps = 13/130 (10%)
 Frame = +2

Query: 89  QGFENAPVRQLPDARDHPGRP----------PTRGEVHGLRSPHEP-RPRRLRGVPQAPA 235
           Q F   P   +P     PG P          P RG       P +P R   +RG P  P 
Sbjct: 641 QHFPPGPGGPMPGPHGGPGGPVGPRLLGPPPPPRGGDPFWDGPGDPMRGGPMRGGP-GPG 699

Query: 236 LKIFQDHRRARGA-EDARPAPSPWRGGR-LHDRRGPAPAR*VPGQGLXXXXXXXXXXXXX 409
              +   R  RG  E   P P P+RG R      GP   R  PG G+             
Sbjct: 700 PGPYHRGRGGRGGNEPPPPPPPPFRGARGGRSGGGPPNGRGGPGGGMVGG---------- 749

Query: 410 XCRPWGGHRP 439
                GGHRP
Sbjct: 750 -----GGHRP 754

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>NAPB_PARPN (Q56351) Diheme cytochrome c napB precursor (Cytochrome c-552)|
           (Cytochrome c552)
          Length = 161

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +2

Query: 107 PVRQLPDARDHPGRPPTRGEVHGLRSPHEPRPRRLRGVPQAP 232
           P  Q+  A D  GR   RG++  L  P     RR+R  P+ P
Sbjct: 33  PAVQIVPALDRLGRADVRGQIPPLGRPITDDVRRMRNYPEQP 74

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>LSM7_MOUSE (Q9CQQ8) U6 snRNA-associated Sm-like protein LSm7|
          Length = 103

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +3

Query: 108 QFVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLP 233
           ++++  +RV  Q GR+  G    FD  +NLVL    E+ + P
Sbjct: 17  KYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTMEYMRDP 58

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>RUXE_MOUSE (P62305) Small nuclear ribonucleoprotein E (snRNP-E) (Sm protein E)|
           (Sm-E) (SmE)
          Length = 92

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
 Frame = +3

Query: 102 MLQFVNYRMRVTI----QDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPSK 242
           + +++  R R+ +    Q   ++ G  + FD +MNLVL D EE      S+
Sbjct: 21  IFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSR 71

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>RUXE_HUMAN (P62304) Small nuclear ribonucleoprotein E (snRNP-E) (Sm protein E)|
           (Sm-E) (SmE)
          Length = 92

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
 Frame = +3

Query: 102 MLQFVNYRMRVTI----QDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPSK 242
           + +++  R R+ +    Q   ++ G  + FD +MNLVL D EE      S+
Sbjct: 21  IFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSR 71

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>RUXE_CHICK (P62303) Small nuclear ribonucleoprotein E (snRNP-E) (Sm protein E)|
           (Sm-E) (SmE)
          Length = 92

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
 Frame = +3

Query: 102 MLQFVNYRMRVTI----QDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPSK 242
           + +++  R R+ +    Q   ++ G  + FD +MNLVL D EE      S+
Sbjct: 21  IFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSR 71

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>RUXE_BRARE (Q7ZUG0) Small nuclear ribonucleoprotein E (snRNP-E) (Sm protein E)|
           (Sm-E) (SmE)
          Length = 92

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
 Frame = +3

Query: 102 MLQFVNYRMRVTI----QDGRQLVGKFMAFDRHMNLVLGDCEE 218
           + +++  R R+++    Q   ++ G  + FD +MNLVL D EE
Sbjct: 21  IFRYLQNRSRISVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEE 63

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>LSM7_HUMAN (Q9UK45) U6 snRNA-associated Sm-like protein LSm7|
          Length = 103

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +3

Query: 108 QFVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLP 233
           ++++  +RV  Q GR+  G    FD  +NLVL    E+ + P
Sbjct: 17  KYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDP 58

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>TOP3B_MOUSE (Q9Z321) DNA topoisomerase 3-beta-1 (EC 5.99.1.2) (DNA|
           topoisomerase III beta-1)
          Length = 862

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 14/29 (48%), Positives = 15/29 (51%)
 Frame = +2

Query: 122 PDARDHPGRPPTRGEVHGLRSPHEPRPRR 208
           P  R  PGR   RG   G R P +P PRR
Sbjct: 821 PMHRGGPGRRQGRGRGRGRRPPGKPNPRR 849

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>EFS_MOUSE (Q64355) Embryonal Fyn-associated substrate (SRC-interacting|
           protein) (Signal-integrating protein)
          Length = 560

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 25/86 (29%), Positives = 30/86 (34%)
 Frame = +2

Query: 110 VRQLPDARDHPGRPPTRGEVHGLRSPHEPRPRRLRGVPQAPALKIFQDHRRARGAEDARP 289
           V QLP     P   P       L      RP     V +APA                 P
Sbjct: 279 VAQLPTRSSPPQHRPRLPSTESLSR----RPLPALPVSEAPA-------------PSPAP 321

Query: 290 APSPWRGGRLHDRRGPAPAR*VPGQG 367
           +P+P R G + DR  P P   +PG G
Sbjct: 322 SPAPGRKGSIQDRPLPPPPPCLPGYG 347

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>KLK9_HUMAN (Q9UKQ9) Kallikrein-9 precursor (EC 3.4.21.-) (Kallikrein-like|
           protein 3) (KLK-L3)
          Length = 250

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +2

Query: 260 RARGAEDARPAPSPWRGGRLH 322
           RA GAE+ RP   PW+ G  H
Sbjct: 22  RAIGAEECRPNSQPWQAGLFH 42

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>IE63_HHV1E (P36295) Transcriptional regulator IE63 (VMW63) (ICP27)|
          Length = 511

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 33/97 (34%), Positives = 42/97 (43%), Gaps = 2/97 (2%)
 Frame = +2

Query: 83  EPQGFENAPVRQLPDARDHPGRPPTRGEVHGLRSPHEPRPRRLRGV--PQAPALKIFQDH 256
           +P G E+ P   L  AR  P   P+R E  G+ S   PRP   +G   PQ PA       
Sbjct: 52  DPHG-EDGPEPILDAAR--PAVRPSRPEDPGVPSTQTPRPTERQGPNDPQ-PAPHSVWSR 107

Query: 257 RRARGAEDARPAPSPWRGGRLHDRRGPAPAR*VPGQG 367
             AR     RP+ SP + G    R  P P +  P +G
Sbjct: 108 LGAR-----RPSCSPEQHGGKVARLQPPPTKAQPARG 139

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>IE63_HHV11 (P10238) Transcriptional regulator IE63 (VMW63) (ICP27)|
          Length = 512

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 33/97 (34%), Positives = 42/97 (43%), Gaps = 2/97 (2%)
 Frame = +2

Query: 83  EPQGFENAPVRQLPDARDHPGRPPTRGEVHGLRSPHEPRPRRLRGV--PQAPALKIFQDH 256
           +P G E+ P   L  AR  P   P+R E  G+ S   PRP   +G   PQ PA       
Sbjct: 52  DPHG-EDGPEPILDAAR--PAVRPSRPEDPGVPSTQTPRPTERQGPNDPQ-PAPHSVWSR 107

Query: 257 RRARGAEDARPAPSPWRGGRLHDRRGPAPAR*VPGQG 367
             AR     RP+ SP + G    R  P P +  P +G
Sbjct: 108 LGAR-----RPSCSPEQHGGKVARLQPPPTKAQPARG 139

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>SRRM1_CHICK (Q5ZMJ9) Serine/arginine repetitive matrix protein 1|
          Length = 888

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 24/72 (33%), Positives = 28/72 (38%), Gaps = 1/72 (1%)
 Frame = +2

Query: 131 RDHPGRPPTRGEVHGLRSPHEPRPRRLRGVPQAPALKIFQDHRRARGAEDARPAPSPWR- 307
           R  P  PP R      RSP  P P R R  P  P        RR+      R +PSP R 
Sbjct: 541 RRSPSPPPARRR----RSPSPPPPPRRRRSPSLP-------RRRSPSPPPRRRSPSPRRY 589

Query: 308 GGRLHDRRGPAP 343
              +  R  P+P
Sbjct: 590 SPPIQRRYSPSP 601

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>SYN1_MOUSE (O88935) Synapsin-1 (Synapsin I)|
          Length = 706

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 24/83 (28%), Positives = 30/83 (36%)
 Frame = +2

Query: 113 RQLPDARDHPGRPPTRGEVHGLRSPHEPRPRRLRGVPQAPALKIFQDHRRARGAEDARPA 292
           RQ       PG PP        R P  P P+R  G PQA            R A  + PA
Sbjct: 531 RQSRPVAGGPGAPPAA------RPPASPSPQRQAGAPQA-----------TRQASISGPA 573

Query: 293 PSPWRGGRLHDRRGPAPAR*VPG 361
           P+   G     ++   P +  PG
Sbjct: 574 PTKASGAPPGGQQRQGPPQKPPG 596

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>EFS_HUMAN (O43281) Embryonal Fyn-associated substrate (HEFS)|
          Length = 561

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 25/80 (31%), Positives = 32/80 (40%)
 Frame = +2

Query: 128 ARDHPGRPPTRGEVHGLRSPHEPRPRRLRGVPQAPALKIFQDHRRARGAEDARPAPSPWR 307
           AR  P  PP R  +    S    RP     VP+AP+                 P+P+P R
Sbjct: 285 ARSPP--PPHRPRLPSAESLSR-RPLPALPVPEAPS-------------PSPVPSPAPGR 328

Query: 308 GGRLHDRRGPAPAR*VPGQG 367
            G + DR  P P   +PG G
Sbjct: 329 KGSIQDRPLPPPPPRLPGYG 348

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>CO2A1_HUMAN (P02458) Collagen alpha-1(II) chain precursor [Contains:|
           Chondrocalcin]
          Length = 1418

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 27/86 (31%), Positives = 36/86 (41%), Gaps = 11/86 (12%)
 Frame = +2

Query: 140 PGRPPTRGEVH-----GLRSPHEPRPRRLRGVPQAPALKIFQDHRRARGAEDAR-PAPSP 301
           PG+P   GE       G R P  P P+  RG P  P L   + HR   G + A+  A +P
Sbjct: 179 PGKPGDDGEAGKPGKAGERGP--PGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAP 236

Query: 302 WRGGRL-----HDRRGPAPAR*VPGQ 364
              G       +   GP   R +PG+
Sbjct: 237 GVKGESGSPGENGSPGPMGPRGLPGE 262

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>SPTN4_HUMAN (Q9H254) Spectrin beta chain, brain 3 (Spectrin, non-erythroid beta|
            chain 3) (Beta-IV spectrin)
          Length = 2564

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 27/86 (31%), Positives = 31/86 (36%)
 Frame = +2

Query: 110  VRQLPDARDHPGRPPTRGEVHGLRSPHEPRPRRLRGVPQAPALKIFQDHRRARGAEDARP 289
            V QL +    PG P        L  P E  P RL    + P      D  RAR     R 
Sbjct: 2327 VEQLQEKEAGPGLPAGPS----LPQPRELPPGRLPNGLELPERTPRPDRPRARDRPKPRR 2382

Query: 290  APSPWRGGRLHDRRGPAPAR*VPGQG 367
             P P  GG   +  G   +R  P QG
Sbjct: 2383 RPRPREGG---EGGGSRRSRSAPAQG 2405

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>RP3A_RAT (P47709) Rabphilin-3A (Exophilin-1)|
          Length = 684

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 28/109 (25%), Positives = 41/109 (37%), Gaps = 21/109 (19%)
 Frame = +2

Query: 83  EPQGFENAPVRQLPDARDHPGRPPTRGEVHGLRSP----------------HEPRPRRLR 214
           +P G      +  P++R HP R P RG++   R+P                H P  RR  
Sbjct: 176 QPAGEPATQEQPTPESR-HPARAPARGDMEDRRAPGQKPGPDLTSAPGRGSHGPPTRRAS 234

Query: 215 GVPQAPALKIFQ--DHRRARGAEDARPAPSPWRGGRLHD---RRGPAPA 346
               +   +  +  DH    GA D   +P   +G R  +      PAPA
Sbjct: 235 EARMSTTTRDSEGWDHGHGGGAGDTSRSPGGEQGLRRANSVQASRPAPA 283

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>CO2A1_BOVIN (P02459) Collagen alpha-1(II) chain precursor (Fragments)|
          Length = 747

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 5/54 (9%)
 Frame = +2

Query: 140 PGRPPTRGEV-----HGLRSPHEPRPRRLRGVPQAPALKIFQDHRRARGAEDAR 286
           PG+P   GE       G R P  P P+  RG P  P L   + HR   G + A+
Sbjct: 63  PGKPGDDGEAGKPGKSGERGP--PGPQGARGFPGTPGLPGVKGHRGYPGLDGAK 114

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>SF3B4_HUMAN (Q15427) Splicing factor 3B subunit 4 (Spliceosome-associated|
           protein 49) (SAP 49) (SF3b50) (Pre-mRNA-splicing factor
           SF3b 49 kDa subunit)
          Length = 424

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 30/101 (29%), Positives = 36/101 (35%), Gaps = 4/101 (3%)
 Frame = +2

Query: 77  HVEPQGFENAPVRQLPDARDHPGRP----PTRGEVHGLRSPHEPRPRRLRGVPQAPALKI 244
           H  P G    P  + P    HPG P    P RG   G    H P P    G+   P L  
Sbjct: 323 HAGPPGSGGQPPPRPPPGMPHPGPPPMGMPPRGPPFGSPMGH-PGPMPPHGMRGPPPLMP 381

Query: 245 FQDHRRARGAEDARPAPSPWRGGRLHDRRGPAPAR*VPGQG 367
              +         RP P  ++ G L   R P P   VP +G
Sbjct: 382 PHGY-----TGPPRPPPYGYQRGPLPPPR-PTPRPPVPPRG 416

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>SMD2_YEAST (Q06217) Small nuclear ribonucleoprotein Sm D2 (snRNP core protein|
           D2) (Sm-D2)
          Length = 110

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 9/29 (31%), Positives = 21/29 (72%)
 Frame = +3

Query: 132 VTIQDGRQLVGKFMAFDRHMNLVLGDCEE 218
           +++++  +++ +  AFDRH N+VL + +E
Sbjct: 46  ISLRNNHKIIARVKAFDRHCNMVLENVKE 74

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>TRS1_HCMVA (P09695) Protein HHLF1|
          Length = 788

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 5/30 (16%)
 Frame = -2

Query: 158 ELAAV-----LDGHAHPVVDELEHFRTLGV 84
           EL AV     LDGH +P+  EL HF   GV
Sbjct: 467 ELGAVFGYCPLDGHVYPLAAELSHFLRAGV 496

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>IRS1_HCMVA (P09715) Protein IRS1 (HQRF1)|
          Length = 846

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 15/30 (50%), Positives = 17/30 (56%), Gaps = 5/30 (16%)
 Frame = -2

Query: 158 ELAAV-----LDGHAHPVVDELEHFRTLGV 84
           EL AV     LDGH +P+  EL HF   GV
Sbjct: 467 ELGAVFGYCPLDGHVYPLAAELSHFLRAGV 496

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>LSM1_MOUSE (Q8VC85) U6 snRNA-associated Sm-like protein LSm1|
          Length = 133

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 12/39 (30%), Positives = 24/39 (61%)
 Frame = +3

Query: 87  PKGSKMLQFVNYRMRVTIQDGRQLVGKFMAFDRHMNLVL 203
           P  + +++ ++ +  V ++DGR L+G   + D+  NLVL
Sbjct: 5   PGTASLIEDIDKKHLVLLRDGRTLIGFLRSIDQFANLVL 43

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>LSM1_HUMAN (O15116) U6 snRNA-associated Sm-like protein LSm1 (Small nuclear|
           ribonuclear CaSm) (Cancer-associated Sm-like)
          Length = 133

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 12/39 (30%), Positives = 24/39 (61%)
 Frame = +3

Query: 87  PKGSKMLQFVNYRMRVTIQDGRQLVGKFMAFDRHMNLVL 203
           P  + +++ ++ +  V ++DGR L+G   + D+  NLVL
Sbjct: 5   PGTASLIEDIDKKHLVLLRDGRTLIGFLRSIDQFANLVL 43


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,068,182
Number of Sequences: 219361
Number of extensions: 875749
Number of successful extensions: 3284
Number of sequences better than 10.0: 101
Number of HSP's better than 10.0 without gapping: 2968
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3240
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2618960580
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result