Clone Name | bart52c09 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK104444.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-210-H06, full insert sequence Length = 1285 Score = 283 bits (143), Expect = 2e-73 Identities = 263/303 (86%) Strand = Plus / Plus Query: 118 ttactttggagcgcttgttggacgagtagccaacagggttgccaaggcgcgcttcgtgct 177 ||||||||||||||| || ||||| ||||||||||| ||||||||||||| |||||||| Sbjct: 287 ttactttggagcgctcgtcggacgggtagccaacagaattgccaaggcgcggttcgtgct 346 Query: 178 cgatggaaaagtgtaccacctatatgccaacgatggcaaaaacgcacttcatggtggcca 237 ||||||||||| || || || ||| | || |||||||||||| ||||||| ||||| || Sbjct: 347 cgatggaaaagcttatcatctgtatccaaatgatggcaaaaacacacttcacggtggtca 406 Query: 238 taggggcttcagcaaagttatatggacggtgaaggaatatgttagtgggggtgactcccc 297 ||||| |||||||| |||| |||||| |||||||| ||||| |||| |||||| | || Sbjct: 407 caggggtttcagcaatgttacatggacagtgaaggagcatgttggtggaggtgacgcacc 466 Query: 298 acacatcacactctactaccatagcttcgacggagaacaagggtttccgggggccctgga 357 | |||||||||| |||||||||||||| |||||||||||||| || || || ||||| || Sbjct: 467 atacatcacactgtactaccatagctttgacggagaacaaggattcccaggcgccctaga 526 Query: 358 cgtgtacgtgacgtacgagctgtcgagcccgtacgtgctgagcgtgcgcatgaacgcgac 417 |||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||||| Sbjct: 527 cgtgtacgtgacgtaccagctgtccggcccgtacgtgctgagcgtgcacatgaacgcgac 586 Query: 418 ggc 420 ||| Sbjct: 587 ggc 589
>dbj|AK059553.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-029-G05, full insert sequence Length = 1329 Score = 283 bits (143), Expect = 2e-73 Identities = 263/303 (86%) Strand = Plus / Plus Query: 118 ttactttggagcgcttgttggacgagtagccaacagggttgccaaggcgcgcttcgtgct 177 ||||||||||||||| || ||||| ||||||||||| ||||||||||||| |||||||| Sbjct: 311 ttactttggagcgctcgtcggacgggtagccaacagaattgccaaggcgcggttcgtgct 370 Query: 178 cgatggaaaagtgtaccacctatatgccaacgatggcaaaaacgcacttcatggtggcca 237 ||||||||||| || || || ||| | || |||||||||||| ||||||| ||||| || Sbjct: 371 cgatggaaaagcttatcatctgtatccaaatgatggcaaaaacacacttcacggtggtca 430 Query: 238 taggggcttcagcaaagttatatggacggtgaaggaatatgttagtgggggtgactcccc 297 ||||| |||||||| |||| |||||| |||||||| ||||| |||| |||||| | || Sbjct: 431 caggggtttcagcaatgttacatggacagtgaaggagcatgttggtggaggtgacgcacc 490 Query: 298 acacatcacactctactaccatagcttcgacggagaacaagggtttccgggggccctgga 357 | |||||||||| |||||||||||||| |||||||||||||| || || || ||||| || Sbjct: 491 atacatcacactgtactaccatagctttgacggagaacaaggattcccaggcgccctaga 550 Query: 358 cgtgtacgtgacgtacgagctgtcgagcccgtacgtgctgagcgtgcgcatgaacgcgac 417 |||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||||| Sbjct: 551 cgtgtacgtgacgtaccagctgtccggcccgtacgtgctgagcgtgcacatgaacgcgac 610 Query: 418 ggc 420 ||| Sbjct: 611 ggc 613
>ref|XM_472738.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1206 Score = 186 bits (94), Expect = 4e-44 Identities = 160/182 (87%) Strand = Plus / Plus Query: 239 aggggcttcagcaaagttatatggacggtgaaggaatatgttagtgggggtgactcccca 298 ||||| |||||||| |||| |||||| |||||||| ||||| |||| |||||| | ||| Sbjct: 442 aggggtttcagcaatgttacatggacagtgaaggagcatgttggtggaggtgacgcacca 501 Query: 299 cacatcacactctactaccatagcttcgacggagaacaagggtttccgggggccctggac 358 |||||||||| |||||||||||||| |||||||||||||| || || || ||||| ||| Sbjct: 502 tacatcacactgtactaccatagctttgacggagaacaaggattcccaggcgccctagac 561 Query: 359 gtgtacgtgacgtacgagctgtcgagcccgtacgtgctgagcgtgcgcatgaacgcgacg 418 ||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||||||| Sbjct: 562 gtgtacgtgacgtaccagctgtccggcccgtacgtgctgagcgtgcacatgaacgcgacg 621 Query: 419 gc 420 || Sbjct: 622 gc 623 Score = 101 bits (51), Expect = 2e-18 Identities = 96/111 (86%) Strand = Plus / Plus Query: 118 ttactttggagcgcttgttggacgagtagccaacagggttgccaaggcgcgcttcgtgct 177 ||||||||||||||| || ||||| ||||||||||| ||||||||||||| |||||||| Sbjct: 258 ttactttggagcgctcgtcggacgggtagccaacagaattgccaaggcgcggttcgtgct 317 Query: 178 cgatggaaaagtgtaccacctatatgccaacgatggcaaaaacgcacttca 228 ||||||||||| || || || ||| | || |||||||||||| ||||||| Sbjct: 318 cgatggaaaagcttatcatctgtatccaaatgatggcaaaaacacacttca 368
>gb|BT016428.1| Zea mays clone Contig261 mRNA sequence Length = 1373 Score = 167 bits (84), Expect = 4e-38 Identities = 183/216 (84%) Strand = Plus / Plus Query: 205 caacgatggcaaaaacgcacttcatggtggccataggggcttcagcaaagttatatggac 264 |||||| ||||| ||| | || || |||||||| |||| |||||||| || ||||||| Sbjct: 344 caacgacggcaacaactcgctccacggtggccaccgggggttcagcaaggtcgtatggac 403 Query: 265 ggtgaaggaatatgttagtgggggtgactccccacacatcacactctactaccatagctt 324 ||||||||| | || | || ||||||||||| ||||||| ||||||||||||||||| Sbjct: 404 ggtgaaggagcacgtcggcggcggtgactccccgtacatcacgctctactaccatagctt 463 Query: 325 cgacggagaacaagggtttccgggggccctggacgtgtacgtgacgtacgagctgtcgag 384 |||||| || |||||||| || || | |||||||||||||||||||||| |||||| | Sbjct: 464 cgacggggagcaagggttccccggcgacctggacgtgtacgtgacgtaccgtctgtcgcg 523 Query: 385 cccgtacgtgctgagcgtgcgcatgaacgcgacggc 420 |||||||||||||||||||||||||||||| ||||| Sbjct: 524 cccgtacgtgctgagcgtgcgcatgaacgccacggc 559
>ref|XM_472739.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1092 Score = 137 bits (69), Expect = 3e-29 Identities = 152/177 (85%), Gaps = 2/177 (1%) Strand = Plus / Plus Query: 245 ttcagcaaagttatatggacggtgaaggaatatgttagtgggggtgactccccacacatc 304 ||||||||||| ||||||||||||||||| || || | || || ||||| || ||||| Sbjct: 376 ttcagcaaagtcatatggacggtgaaggagtacgtcggcggcggcgactcgccgtacatc 435 Query: 305 acactctactaccatagcttcgacggagaacaagggtttccgggggccctggacgtgtac 364 || | ||||||| |||||||||||||| ||||| || || |||| |||||||| |||| Sbjct: 436 accttgtactaccgcagcttcgacggagagcaaggtttccccggggacctggacgcgtac 495 Query: 365 gtgacgtacgagctgtcgagcccgtacgtgctgagcg-tgcgcatgaacgcgacggc 420 ||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||| Sbjct: 496 gtgacgtaccagctgtcgagcccgtacgtgctg-gcgctgcgcatgaacgcgacggc 551
>dbj|AK106058.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-206-F10, full insert sequence Length = 1343 Score = 137 bits (69), Expect = 3e-29 Identities = 152/177 (85%), Gaps = 2/177 (1%) Strand = Plus / Plus Query: 245 ttcagcaaagttatatggacggtgaaggaatatgttagtgggggtgactccccacacatc 304 ||||||||||| ||||||||||||||||| || || | || || ||||| || ||||| Sbjct: 436 ttcagcaaagtcatatggacggtgaaggagtacgtcggcggcggcgactcgccgtacatc 495 Query: 305 acactctactaccatagcttcgacggagaacaagggtttccgggggccctggacgtgtac 364 || | ||||||| |||||||||||||| ||||| || || |||| |||||||| |||| Sbjct: 496 accttgtactaccgcagcttcgacggagagcaaggtttccccggggacctggacgcgtac 555 Query: 365 gtgacgtacgagctgtcgagcccgtacgtgctgagcg-tgcgcatgaacgcgacggc 420 ||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||| Sbjct: 556 gtgacgtaccagctgtcgagcccgtacgtgctg-gcgctgcgcatgaacgcgacggc 611
>ref|XM_466392.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1299 Score = 119 bits (60), Expect = 8e-24 Identities = 147/176 (83%) Strand = Plus / Plus Query: 245 ttcagcaaagttatatggacggtgaaggaatatgttagtgggggtgactccccacacatc 304 |||||||| || ||||||||||||||||| | || || || ||||| || | |||| Sbjct: 420 ttcagcaaggtcatatggacggtgaaggagcacgtcgccggcggcgactcgccgcgcatc 479 Query: 305 acactctactaccatagcttcgacggagaacaagggtttccgggggccctggacgtgtac 364 || || |||||||| ||||||||||| || ||||| |||||||| | ||||||||||| | Sbjct: 480 acgctgtactaccacagcttcgacggggagcaaggttttccgggcgacctggacgtgttc 539 Query: 365 gtgacgtacgagctgtcgagcccgtacgtgctgagcgtgcgcatgaacgcgacggc 420 ||||||||||||||| | |||| ||||||||| ||||||||||||||||||||| Sbjct: 540 gtgacgtacgagctgccccgcccctacgtgctggccgtgcgcatgaacgcgacggc 595
>dbj|AK109600.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-137-E04, full insert sequence Length = 1324 Score = 119 bits (60), Expect = 8e-24 Identities = 147/176 (83%) Strand = Plus / Plus Query: 245 ttcagcaaagttatatggacggtgaaggaatatgttagtgggggtgactccccacacatc 304 |||||||| || ||||||||||||||||| | || || || ||||| || | |||| Sbjct: 420 ttcagcaaggtcatatggacggtgaaggagcacgtcgccggcggcgactcgccgcgcatc 479 Query: 305 acactctactaccatagcttcgacggagaacaagggtttccgggggccctggacgtgtac 364 || || |||||||| ||||||||||| || ||||| |||||||| | ||||||||||| | Sbjct: 480 acgctgtactaccacagcttcgacggggagcaaggttttccgggcgacctggacgtgttc 539 Query: 365 gtgacgtacgagctgtcgagcccgtacgtgctgagcgtgcgcatgaacgcgacggc 420 ||||||||||||||| | |||| ||||||||| ||||||||||||||||||||| Sbjct: 540 gtgacgtacgagctgccccgcccctacgtgctggccgtgcgcatgaacgcgacggc 595
>emb|AL606636.4|OSJN00075 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0036B21, complete sequence Length = 138969 Score = 101 bits (51), Expect = 2e-18 Identities = 66/71 (92%) Strand = Plus / Plus Query: 350 gccctggacgtgtacgtgacgtacgagctgtcgagcccgtacgtgctgagcgtgcgcatg 409 ||||| |||||||||||||||||| ||||||| ||||||||||||||||||||| |||| Sbjct: 81287 gccctagacgtgtacgtgacgtaccagctgtccggcccgtacgtgctgagcgtgcacatg 81346 Query: 410 aacgcgacggc 420 ||||||||||| Sbjct: 81347 aacgcgacggc 81357 Score = 101 bits (51), Expect = 2e-18 Identities = 96/111 (86%) Strand = Plus / Plus Query: 118 ttactttggagcgcttgttggacgagtagccaacagggttgccaaggcgcgcttcgtgct 177 ||||||||||||||| || ||||| ||||||||||| ||||||||||||| |||||||| Sbjct: 78795 ttactttggagcgctcgtcggacgggtagccaacagaattgccaaggcgcggttcgtgct 78854 Query: 178 cgatggaaaagtgtaccacctatatgccaacgatggcaaaaacgcacttca 228 ||||||||||| || || || ||| | || |||||||||||| ||||||| Sbjct: 78855 cgatggaaaagcttatcatctgtatccaaatgatggcaaaaacacacttca 78905 Score = 99.6 bits (50), Expect = 7e-18 Identities = 95/110 (86%) Strand = Plus / Plus Query: 230 ggtggccataggggcttcagcaaagttatatggacggtgaaggaatatgttagtgggggt 289 ||||| || ||||| |||||||| |||| |||||| |||||||| ||||| |||| ||| Sbjct: 79000 ggtggtcacaggggtttcagcaatgttacatggacagtgaaggagcatgttggtggaggt 79059 Query: 290 gactccccacacatcacactctactaccatagcttcgacggagaacaagg 339 ||| | ||| |||||||||| |||||||||||||| |||||||||||||| Sbjct: 79060 gacgcaccatacatcacactgtactaccatagctttgacggagaacaagg 79109 Score = 93.7 bits (47), Expect = 4e-16 Identities = 70/75 (93%), Gaps = 2/75 (2%) Strand = Plus / Plus Query: 347 ggggccctggacgtgtacgtgacgtacgagctgtcgagcccgtacgtgctgagcg-tgcg 405 |||| |||||||| ||||||||||||| ||||||||||||||||||||||| ||| |||| Sbjct: 88245 ggggacctggacgcgtacgtgacgtaccagctgtcgagcccgtacgtgctg-gcgctgcg 88303 Query: 406 catgaacgcgacggc 420 ||||||||||||||| Sbjct: 88304 catgaacgcgacggc 88318 Score = 54.0 bits (27), Expect = 4e-04 Identities = 78/95 (82%) Strand = Plus / Plus Query: 245 ttcagcaaagttatatggacggtgaaggaatatgttagtgggggtgactccccacacatc 304 ||||||||||| ||||||||||||||||| || || | || || ||||| || ||||| Sbjct: 88055 ttcagcaaagtcatatggacggtgaaggagtacgtcggcggcggcgactcgccgtacatc 88114 Query: 305 acactctactaccatagcttcgacggagaacaagg 339 || | ||||||| |||||||||||||| ||||| Sbjct: 88115 accttgtactaccgcagcttcgacggagagcaagg 88149
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 101 bits (51), Expect = 2e-18 Identities = 66/71 (92%) Strand = Plus / Plus Query: 350 gccctggacgtgtacgtgacgtacgagctgtcgagcccgtacgtgctgagcgtgcgcatg 409 ||||| |||||||||||||||||| ||||||| ||||||||||||||||||||| |||| Sbjct: 22872512 gccctagacgtgtacgtgacgtaccagctgtccggcccgtacgtgctgagcgtgcacatg 22872571 Query: 410 aacgcgacggc 420 ||||||||||| Sbjct: 22872572 aacgcgacggc 22872582 Score = 101 bits (51), Expect = 2e-18 Identities = 96/111 (86%) Strand = Plus / Plus Query: 118 ttactttggagcgcttgttggacgagtagccaacagggttgccaaggcgcgcttcgtgct 177 ||||||||||||||| || ||||| ||||||||||| ||||||||||||| |||||||| Sbjct: 22870020 ttactttggagcgctcgtcggacgggtagccaacagaattgccaaggcgcggttcgtgct 22870079 Query: 178 cgatggaaaagtgtaccacctatatgccaacgatggcaaaaacgcacttca 228 ||||||||||| || || || ||| | || |||||||||||| ||||||| Sbjct: 22870080 cgatggaaaagcttatcatctgtatccaaatgatggcaaaaacacacttca 22870130 Score = 99.6 bits (50), Expect = 7e-18 Identities = 95/110 (86%) Strand = Plus / Plus Query: 230 ggtggccataggggcttcagcaaagttatatggacggtgaaggaatatgttagtgggggt 289 ||||| || ||||| |||||||| |||| |||||| |||||||| ||||| |||| ||| Sbjct: 22870225 ggtggtcacaggggtttcagcaatgttacatggacagtgaaggagcatgttggtggaggt 22870284 Query: 290 gactccccacacatcacactctactaccatagcttcgacggagaacaagg 339 ||| | ||| |||||||||| |||||||||||||| |||||||||||||| Sbjct: 22870285 gacgcaccatacatcacactgtactaccatagctttgacggagaacaagg 22870334 Score = 93.7 bits (47), Expect = 4e-16 Identities = 70/75 (93%), Gaps = 2/75 (2%) Strand = Plus / Plus Query: 347 ggggccctggacgtgtacgtgacgtacgagctgtcgagcccgtacgtgctgagcg-tgcg 405 |||| |||||||| ||||||||||||| ||||||||||||||||||||||| ||| |||| Sbjct: 22879470 ggggacctggacgcgtacgtgacgtaccagctgtcgagcccgtacgtgctg-gcgctgcg 22879528 Query: 406 catgaacgcgacggc 420 ||||||||||||||| Sbjct: 22879529 catgaacgcgacggc 22879543 Score = 54.0 bits (27), Expect = 4e-04 Identities = 78/95 (82%) Strand = Plus / Plus Query: 245 ttcagcaaagttatatggacggtgaaggaatatgttagtgggggtgactccccacacatc 304 ||||||||||| ||||||||||||||||| || || | || || ||||| || ||||| Sbjct: 22879280 ttcagcaaagtcatatggacggtgaaggagtacgtcggcggcggcgactcgccgtacatc 22879339 Query: 305 acactctactaccatagcttcgacggagaacaagg 339 || | ||||||| |||||||||||||| ||||| Sbjct: 22879340 accttgtactaccgcagcttcgacggagagcaagg 22879374
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 87.7 bits (44), Expect = 3e-14 Identities = 71/80 (88%) Strand = Plus / Plus Query: 341 tttccgggggccctggacgtgtacgtgacgtacgagctgtcgagcccgtacgtgctgagc 400 |||||||| | ||||||||||| |||||||||||||||| | |||| ||||||||| | Sbjct: 22123612 tttccgggcgacctggacgtgttcgtgacgtacgagctgccccgcccctacgtgctggcc 22123671 Query: 401 gtgcgcatgaacgcgacggc 420 |||||||||||||||||||| Sbjct: 22123672 gtgcgcatgaacgcgacggc 22123691 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 245 ttcagcaaagttatatggacggtgaagga 273 |||||||| || ||||||||||||||||| Sbjct: 22122824 ttcagcaaggtcatatggacggtgaagga 22122852
>dbj|AP005116.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0703B01 Length = 137445 Score = 87.7 bits (44), Expect = 3e-14 Identities = 71/80 (88%) Strand = Plus / Plus Query: 341 tttccgggggccctggacgtgtacgtgacgtacgagctgtcgagcccgtacgtgctgagc 400 |||||||| | ||||||||||| |||||||||||||||| | |||| ||||||||| | Sbjct: 97511 tttccgggcgacctggacgtgttcgtgacgtacgagctgccccgcccctacgtgctggcc 97570 Query: 401 gtgcgcatgaacgcgacggc 420 |||||||||||||||||||| Sbjct: 97571 gtgcgcatgaacgcgacggc 97590 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 245 ttcagcaaagttatatggacggtgaagga 273 |||||||| || ||||||||||||||||| Sbjct: 96723 ttcagcaaggtcatatggacggtgaagga 96751
>dbj|AP006070.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:B1342F01 Length = 153287 Score = 87.7 bits (44), Expect = 3e-14 Identities = 71/80 (88%) Strand = Plus / Plus Query: 341 tttccgggggccctggacgtgtacgtgacgtacgagctgtcgagcccgtacgtgctgagc 400 |||||||| | ||||||||||| |||||||||||||||| | |||| ||||||||| | Sbjct: 19456 tttccgggcgacctggacgtgttcgtgacgtacgagctgccccgcccctacgtgctggcc 19515 Query: 401 gtgcgcatgaacgcgacggc 420 |||||||||||||||||||| Sbjct: 19516 gtgcgcatgaacgcgacggc 19535 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Plus Query: 245 ttcagcaaagttatatggacggtgaagga 273 |||||||| || ||||||||||||||||| Sbjct: 18668 ttcagcaaggtcatatggacggtgaagga 18696
>emb|AL159152.11| Human DNA sequence from clone RP11-165N12 on chromosome 13q32.1-33.3 Contains a novel gene, complete sequence Length = 160404 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 295 cccacacatcacactctactac 316 |||||||||||||||||||||| Sbjct: 130194 cccacacatcacactctactac 130173
>gb|DQ235451.1| Mantidactylus microtympanum voucher ZSM 158/2002 16S ribosomal RNA gene, partial sequence; mitochondrial Length = 648 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 15 ccagccagtctccccaagcaa 35 ||||||||||||||||||||| Sbjct: 7 ccagccagtctccccaagcaa 27
>gb|AE012276.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 184 of 460 of the complete genome Length = 11910 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 384 gcccgtacgtgctgagcgtgc 404 ||||||||||||||||||||| Sbjct: 10179 gcccgtacgtgctgagcgtgc 10199
>gb|AC159195.2| Mus musculus BAC clone RP23-467E1 from chromosome 13, complete sequence Length = 194915 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 186 aagtgtaccacctatatgcca 206 ||||||||||||||||||||| Sbjct: 140026 aagtgtaccacctatatgcca 140006
>gb|AC154378.2| Mus musculus BAC clone RP23-64O5 from 17, complete sequence Length = 232701 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 299 cacatcacactctactaccat 319 ||||||||||||||||||||| Sbjct: 200042 cacatcacactctactaccat 200022
>emb|CT033750.18| Mouse DNA sequence from clone RP23-263M5 on chromosome 17, complete sequence Length = 268616 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 299 cacatcacactctactaccat 319 ||||||||||||||||||||| Sbjct: 45725 cacatcacactctactaccat 45705
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 400 cgtgcgcatgaacgcgacggc 420 ||||||||||||||||||||| Sbjct: 939511 cgtgcgcatgaacgcgacggc 939531
>gb|AC004643.1| Homo sapiens chromosome 16, cosmid clone 363E3 (LANL), complete sequence Length = 43411 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 ccccagccagtctccccaag 32 |||||||||||||||||||| Sbjct: 23123 ccccagccagtctccccaag 23142
>emb|AL513327.34| Human DNA sequence from clone RP11-415J8 on chromosome 1 Contains the gene for a novel protein (FLJ35476), the gene for a novel protein similar to ABO family protein, two novel genes, the PHC2 gene for polyhomeotic-like 2 (Drosophila) and two CpG islands, complete sequence Length = 188665 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 3 ccacccatgaccccagccag 22 |||||||||||||||||||| Sbjct: 64894 ccacccatgaccccagccag 64875
>gb|AC114324.2| Homo sapiens chromosome 5 clone RP11-93O17, complete sequence Length = 150512 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 242 ggcttcagcaaagttatatg 261 |||||||||||||||||||| Sbjct: 115871 ggcttcagcaaagttatatg 115890
>emb|BX640441.1| Bordetella bronchiseptica strain RB50, complete genome; segment 5/16 Length = 348624 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 398 agcgtgcgcatgaacgcgac 417 |||||||||||||||||||| Sbjct: 27585 agcgtgcgcatgaacgcgac 27566
>emb|BX640426.1| Bordetella parapertussis strain 12822, complete genome; segment 4/14 Length = 348866 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 398 agcgtgcgcatgaacgcgac 417 |||||||||||||||||||| Sbjct: 140753 agcgtgcgcatgaacgcgac 140734
>emb|BX640419.1| Bordetella pertussis strain Tohama I, complete genome; segment 9/12 Length = 349672 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 398 agcgtgcgcatgaacgcgac 417 |||||||||||||||||||| Sbjct: 94879 agcgtgcgcatgaacgcgac 94860
>dbj|AK161810.1| Mus musculus 13 days embryo male testis cDNA, RIKEN full-length enriched library, clone:6030452F22 product:hypothetical protein, full insert sequence Length = 2925 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 297 cacacatcacactctactaccata 320 ||||||||||||| |||||||||| Sbjct: 2639 cacacatcacactatactaccata 2616
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 386 ccgtacgtgctgagcgtgcg 405 |||||||||||||||||||| Sbjct: 3006963 ccgtacgtgctgagcgtgcg 3006944
>gb|AC108134.3| Homo sapiens chromosome 16 clone RP11-473M20, complete sequence Length = 180354 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 13 ccccagccagtctccccaag 32 |||||||||||||||||||| Sbjct: 29135 ccccagccagtctccccaag 29116
>gb|AY084845.1| Arabidopsis thaliana clone 119313 mRNA, complete sequence Length = 1355 Score = 40.1 bits (20), Expect = 5.6 Identities = 29/32 (90%) Strand = Plus / Plus Query: 318 atagcttcgacggagaacaagggtttccgggg 349 ||||||||||||| ||| |||| ||||||||| Sbjct: 598 atagcttcgacggtgaagaaggttttccgggg 629
>gb|AY108564.1| Zea mays PCO119136 mRNA sequence Length = 594 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 384 gcccgtacgtgctgagcgtg 403 |||||||||||||||||||| Sbjct: 10 gcccgtacgtgctgagcgtg 29
>gb|AC132954.4| Mus musculus BAC clone RP24-210F23 from 12, complete sequence Length = 160118 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 297 cacacatcacactctactaccata 320 ||||||||||||| |||||||||| Sbjct: 70020 cacacatcacactatactaccata 69997
>gb|AC002549.1|AC002549 Homo sapiens Xp22 BAC GS-377014 (Genome Systems Human BAC library) complete sequence Length = 163027 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 11 gaccccagccagtctcccca 30 |||||||||||||||||||| Sbjct: 83930 gaccccagccagtctcccca 83911 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,992,979 Number of Sequences: 3902068 Number of extensions: 2992979 Number of successful extensions: 40761 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 33 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 40614 Number of HSP's gapped (non-prelim): 133 length of query: 420 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 398 effective length of database: 17,147,199,772 effective search space: 6824585509256 effective search space used: 6824585509256 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)