ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart52c09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK104444.1| Oryza sativa (japonica cultivar-group) cDNA clon... 283 2e-73
2dbj|AK059553.1| Oryza sativa (japonica cultivar-group) cDNA clon... 283 2e-73
3ref|XM_472738.1| Oryza sativa (japonica cultivar-group), predic... 186 4e-44
4gb|BT016428.1| Zea mays clone Contig261 mRNA sequence 167 4e-38
5ref|XM_472739.1| Oryza sativa (japonica cultivar-group), predic... 137 3e-29
6dbj|AK106058.1| Oryza sativa (japonica cultivar-group) cDNA clon... 137 3e-29
7ref|XM_466392.1| Oryza sativa (japonica cultivar-group), mRNA 119 8e-24
8dbj|AK109600.1| Oryza sativa (japonica cultivar-group) cDNA clon... 119 8e-24
9emb|AL606636.4|OSJN00075 Oryza sativa genomic DNA, chromosome 4,... 101 2e-18
10dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 101 2e-18
11dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 88 3e-14
12dbj|AP005116.3| Oryza sativa (japonica cultivar-group) genomic D... 88 3e-14
13dbj|AP006070.2| Oryza sativa (japonica cultivar-group) genomic D... 88 3e-14
14emb|AL159152.11| Human DNA sequence from clone RP11-165N12 on ch... 44 0.36
15gb|DQ235451.1| Mantidactylus microtympanum voucher ZSM 158/2002 ... 42 1.4
16gb|AE012276.1| Xanthomonas campestris pv. campestris str. ATCC 3... 42 1.4
17gb|AC159195.2| Mus musculus BAC clone RP23-467E1 from chromosome... 42 1.4
18gb|AC154378.2| Mus musculus BAC clone RP23-64O5 from 17, complet... 42 1.4
19emb|CT033750.18| Mouse DNA sequence from clone RP23-263M5 on chr... 42 1.4
20gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome 42 1.4
21gb|AC004643.1| Homo sapiens chromosome 16, cosmid clone 363E3 (L... 40 5.6
22emb|AL513327.34| Human DNA sequence from clone RP11-415J8 on chr... 40 5.6
23gb|AC114324.2| Homo sapiens chromosome 5 clone RP11-93O17, compl... 40 5.6
24emb|BX640441.1| Bordetella bronchiseptica strain RB50, complete ... 40 5.6
25emb|BX640426.1| Bordetella parapertussis strain 12822, complete ... 40 5.6
26emb|BX640419.1| Bordetella pertussis strain Tohama I, complete g... 40 5.6
27dbj|AK161810.1| Mus musculus 13 days embryo male testis cDNA, RI... 40 5.6
28gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, ... 40 5.6
29gb|AC108134.3| Homo sapiens chromosome 16 clone RP11-473M20, com... 40 5.6
30gb|AY084845.1| Arabidopsis thaliana clone 119313 mRNA, complete ... 40 5.6
31gb|AY108564.1| Zea mays PCO119136 mRNA sequence 40 5.6
32gb|AC132954.4| Mus musculus BAC clone RP24-210F23 from 12, compl... 40 5.6
33gb|AC002549.1|AC002549 Homo sapiens Xp22 BAC GS-377014 (Genome S... 40 5.6

>dbj|AK104444.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-210-H06, full
           insert sequence
          Length = 1285

 Score =  283 bits (143), Expect = 2e-73
 Identities = 263/303 (86%)
 Strand = Plus / Plus

                                                                       
Query: 118 ttactttggagcgcttgttggacgagtagccaacagggttgccaaggcgcgcttcgtgct 177
           ||||||||||||||| || ||||| |||||||||||  ||||||||||||| ||||||||
Sbjct: 287 ttactttggagcgctcgtcggacgggtagccaacagaattgccaaggcgcggttcgtgct 346

                                                                       
Query: 178 cgatggaaaagtgtaccacctatatgccaacgatggcaaaaacgcacttcatggtggcca 237
           |||||||||||  || || || ||| | || |||||||||||| ||||||| ||||| ||
Sbjct: 347 cgatggaaaagcttatcatctgtatccaaatgatggcaaaaacacacttcacggtggtca 406

                                                                       
Query: 238 taggggcttcagcaaagttatatggacggtgaaggaatatgttagtgggggtgactcccc 297
            ||||| |||||||| |||| |||||| ||||||||  ||||| |||| |||||| | ||
Sbjct: 407 caggggtttcagcaatgttacatggacagtgaaggagcatgttggtggaggtgacgcacc 466

                                                                       
Query: 298 acacatcacactctactaccatagcttcgacggagaacaagggtttccgggggccctgga 357
           | |||||||||| |||||||||||||| |||||||||||||| || || || ||||| ||
Sbjct: 467 atacatcacactgtactaccatagctttgacggagaacaaggattcccaggcgccctaga 526

                                                                       
Query: 358 cgtgtacgtgacgtacgagctgtcgagcccgtacgtgctgagcgtgcgcatgaacgcgac 417
           |||||||||||||||| |||||||  ||||||||||||||||||||| ||||||||||||
Sbjct: 527 cgtgtacgtgacgtaccagctgtccggcccgtacgtgctgagcgtgcacatgaacgcgac 586

              
Query: 418 ggc 420
           |||
Sbjct: 587 ggc 589



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>dbj|AK059553.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-029-G05, full
           insert sequence
          Length = 1329

 Score =  283 bits (143), Expect = 2e-73
 Identities = 263/303 (86%)
 Strand = Plus / Plus

                                                                       
Query: 118 ttactttggagcgcttgttggacgagtagccaacagggttgccaaggcgcgcttcgtgct 177
           ||||||||||||||| || ||||| |||||||||||  ||||||||||||| ||||||||
Sbjct: 311 ttactttggagcgctcgtcggacgggtagccaacagaattgccaaggcgcggttcgtgct 370

                                                                       
Query: 178 cgatggaaaagtgtaccacctatatgccaacgatggcaaaaacgcacttcatggtggcca 237
           |||||||||||  || || || ||| | || |||||||||||| ||||||| ||||| ||
Sbjct: 371 cgatggaaaagcttatcatctgtatccaaatgatggcaaaaacacacttcacggtggtca 430

                                                                       
Query: 238 taggggcttcagcaaagttatatggacggtgaaggaatatgttagtgggggtgactcccc 297
            ||||| |||||||| |||| |||||| ||||||||  ||||| |||| |||||| | ||
Sbjct: 431 caggggtttcagcaatgttacatggacagtgaaggagcatgttggtggaggtgacgcacc 490

                                                                       
Query: 298 acacatcacactctactaccatagcttcgacggagaacaagggtttccgggggccctgga 357
           | |||||||||| |||||||||||||| |||||||||||||| || || || ||||| ||
Sbjct: 491 atacatcacactgtactaccatagctttgacggagaacaaggattcccaggcgccctaga 550

                                                                       
Query: 358 cgtgtacgtgacgtacgagctgtcgagcccgtacgtgctgagcgtgcgcatgaacgcgac 417
           |||||||||||||||| |||||||  ||||||||||||||||||||| ||||||||||||
Sbjct: 551 cgtgtacgtgacgtaccagctgtccggcccgtacgtgctgagcgtgcacatgaacgcgac 610

              
Query: 418 ggc 420
           |||
Sbjct: 611 ggc 613



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>ref|XM_472738.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1206

 Score =  186 bits (94), Expect = 4e-44
 Identities = 160/182 (87%)
 Strand = Plus / Plus

                                                                       
Query: 239 aggggcttcagcaaagttatatggacggtgaaggaatatgttagtgggggtgactcccca 298
           ||||| |||||||| |||| |||||| ||||||||  ||||| |||| |||||| | |||
Sbjct: 442 aggggtttcagcaatgttacatggacagtgaaggagcatgttggtggaggtgacgcacca 501

                                                                       
Query: 299 cacatcacactctactaccatagcttcgacggagaacaagggtttccgggggccctggac 358
            |||||||||| |||||||||||||| |||||||||||||| || || || ||||| |||
Sbjct: 502 tacatcacactgtactaccatagctttgacggagaacaaggattcccaggcgccctagac 561

                                                                       
Query: 359 gtgtacgtgacgtacgagctgtcgagcccgtacgtgctgagcgtgcgcatgaacgcgacg 418
           ||||||||||||||| |||||||  ||||||||||||||||||||| |||||||||||||
Sbjct: 562 gtgtacgtgacgtaccagctgtccggcccgtacgtgctgagcgtgcacatgaacgcgacg 621

             
Query: 419 gc 420
           ||
Sbjct: 622 gc 623



 Score =  101 bits (51), Expect = 2e-18
 Identities = 96/111 (86%)
 Strand = Plus / Plus

                                                                       
Query: 118 ttactttggagcgcttgttggacgagtagccaacagggttgccaaggcgcgcttcgtgct 177
           ||||||||||||||| || ||||| |||||||||||  ||||||||||||| ||||||||
Sbjct: 258 ttactttggagcgctcgtcggacgggtagccaacagaattgccaaggcgcggttcgtgct 317

                                                              
Query: 178 cgatggaaaagtgtaccacctatatgccaacgatggcaaaaacgcacttca 228
           |||||||||||  || || || ||| | || |||||||||||| |||||||
Sbjct: 318 cgatggaaaagcttatcatctgtatccaaatgatggcaaaaacacacttca 368



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>gb|BT016428.1| Zea mays clone Contig261 mRNA sequence
          Length = 1373

 Score =  167 bits (84), Expect = 4e-38
 Identities = 183/216 (84%)
 Strand = Plus / Plus

                                                                       
Query: 205 caacgatggcaaaaacgcacttcatggtggccataggggcttcagcaaagttatatggac 264
           |||||| ||||| ||| | || || ||||||||  |||| |||||||| ||  |||||||
Sbjct: 344 caacgacggcaacaactcgctccacggtggccaccgggggttcagcaaggtcgtatggac 403

                                                                       
Query: 265 ggtgaaggaatatgttagtgggggtgactccccacacatcacactctactaccatagctt 324
           |||||||||  | ||  | || |||||||||||  ||||||| |||||||||||||||||
Sbjct: 404 ggtgaaggagcacgtcggcggcggtgactccccgtacatcacgctctactaccatagctt 463

                                                                       
Query: 325 cgacggagaacaagggtttccgggggccctggacgtgtacgtgacgtacgagctgtcgag 384
           |||||| || |||||||| || || | ||||||||||||||||||||||   |||||| |
Sbjct: 464 cgacggggagcaagggttccccggcgacctggacgtgtacgtgacgtaccgtctgtcgcg 523

                                               
Query: 385 cccgtacgtgctgagcgtgcgcatgaacgcgacggc 420
           |||||||||||||||||||||||||||||| |||||
Sbjct: 524 cccgtacgtgctgagcgtgcgcatgaacgccacggc 559



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>ref|XM_472739.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1092

 Score =  137 bits (69), Expect = 3e-29
 Identities = 152/177 (85%), Gaps = 2/177 (1%)
 Strand = Plus / Plus

                                                                       
Query: 245 ttcagcaaagttatatggacggtgaaggaatatgttagtgggggtgactccccacacatc 304
           ||||||||||| ||||||||||||||||| || ||  | || || ||||| ||  |||||
Sbjct: 376 ttcagcaaagtcatatggacggtgaaggagtacgtcggcggcggcgactcgccgtacatc 435

                                                                       
Query: 305 acactctactaccatagcttcgacggagaacaagggtttccgggggccctggacgtgtac 364
           ||  | |||||||  |||||||||||||| ||||| || || |||| |||||||| ||||
Sbjct: 436 accttgtactaccgcagcttcgacggagagcaaggtttccccggggacctggacgcgtac 495

                                                                    
Query: 365 gtgacgtacgagctgtcgagcccgtacgtgctgagcg-tgcgcatgaacgcgacggc 420
           ||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct: 496 gtgacgtaccagctgtcgagcccgtacgtgctg-gcgctgcgcatgaacgcgacggc 551



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>dbj|AK106058.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-206-F10, full
           insert sequence
          Length = 1343

 Score =  137 bits (69), Expect = 3e-29
 Identities = 152/177 (85%), Gaps = 2/177 (1%)
 Strand = Plus / Plus

                                                                       
Query: 245 ttcagcaaagttatatggacggtgaaggaatatgttagtgggggtgactccccacacatc 304
           ||||||||||| ||||||||||||||||| || ||  | || || ||||| ||  |||||
Sbjct: 436 ttcagcaaagtcatatggacggtgaaggagtacgtcggcggcggcgactcgccgtacatc 495

                                                                       
Query: 305 acactctactaccatagcttcgacggagaacaagggtttccgggggccctggacgtgtac 364
           ||  | |||||||  |||||||||||||| ||||| || || |||| |||||||| ||||
Sbjct: 496 accttgtactaccgcagcttcgacggagagcaaggtttccccggggacctggacgcgtac 555

                                                                    
Query: 365 gtgacgtacgagctgtcgagcccgtacgtgctgagcg-tgcgcatgaacgcgacggc 420
           ||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct: 556 gtgacgtaccagctgtcgagcccgtacgtgctg-gcgctgcgcatgaacgcgacggc 611



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>ref|XM_466392.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1299

 Score =  119 bits (60), Expect = 8e-24
 Identities = 147/176 (83%)
 Strand = Plus / Plus

                                                                       
Query: 245 ttcagcaaagttatatggacggtgaaggaatatgttagtgggggtgactccccacacatc 304
           |||||||| || |||||||||||||||||  | ||    || || ||||| || | ||||
Sbjct: 420 ttcagcaaggtcatatggacggtgaaggagcacgtcgccggcggcgactcgccgcgcatc 479

                                                                       
Query: 305 acactctactaccatagcttcgacggagaacaagggtttccgggggccctggacgtgtac 364
           || || |||||||| ||||||||||| || ||||| |||||||| | ||||||||||| |
Sbjct: 480 acgctgtactaccacagcttcgacggggagcaaggttttccgggcgacctggacgtgttc 539

                                                                   
Query: 365 gtgacgtacgagctgtcgagcccgtacgtgctgagcgtgcgcatgaacgcgacggc 420
           ||||||||||||||| |  |||| |||||||||  |||||||||||||||||||||
Sbjct: 540 gtgacgtacgagctgccccgcccctacgtgctggccgtgcgcatgaacgcgacggc 595



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>dbj|AK109600.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-137-E04, full
           insert sequence
          Length = 1324

 Score =  119 bits (60), Expect = 8e-24
 Identities = 147/176 (83%)
 Strand = Plus / Plus

                                                                       
Query: 245 ttcagcaaagttatatggacggtgaaggaatatgttagtgggggtgactccccacacatc 304
           |||||||| || |||||||||||||||||  | ||    || || ||||| || | ||||
Sbjct: 420 ttcagcaaggtcatatggacggtgaaggagcacgtcgccggcggcgactcgccgcgcatc 479

                                                                       
Query: 305 acactctactaccatagcttcgacggagaacaagggtttccgggggccctggacgtgtac 364
           || || |||||||| ||||||||||| || ||||| |||||||| | ||||||||||| |
Sbjct: 480 acgctgtactaccacagcttcgacggggagcaaggttttccgggcgacctggacgtgttc 539

                                                                   
Query: 365 gtgacgtacgagctgtcgagcccgtacgtgctgagcgtgcgcatgaacgcgacggc 420
           ||||||||||||||| |  |||| |||||||||  |||||||||||||||||||||
Sbjct: 540 gtgacgtacgagctgccccgcccctacgtgctggccgtgcgcatgaacgcgacggc 595



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>emb|AL606636.4|OSJN00075 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0036B21,
             complete sequence
          Length = 138969

 Score =  101 bits (51), Expect = 2e-18
 Identities = 66/71 (92%)
 Strand = Plus / Plus

                                                                         
Query: 350   gccctggacgtgtacgtgacgtacgagctgtcgagcccgtacgtgctgagcgtgcgcatg 409
             ||||| |||||||||||||||||| |||||||  ||||||||||||||||||||| ||||
Sbjct: 81287 gccctagacgtgtacgtgacgtaccagctgtccggcccgtacgtgctgagcgtgcacatg 81346

                        
Query: 410   aacgcgacggc 420
             |||||||||||
Sbjct: 81347 aacgcgacggc 81357



 Score =  101 bits (51), Expect = 2e-18
 Identities = 96/111 (86%)
 Strand = Plus / Plus

                                                                         
Query: 118   ttactttggagcgcttgttggacgagtagccaacagggttgccaaggcgcgcttcgtgct 177
             ||||||||||||||| || ||||| |||||||||||  ||||||||||||| ||||||||
Sbjct: 78795 ttactttggagcgctcgtcggacgggtagccaacagaattgccaaggcgcggttcgtgct 78854

                                                                
Query: 178   cgatggaaaagtgtaccacctatatgccaacgatggcaaaaacgcacttca 228
             |||||||||||  || || || ||| | || |||||||||||| |||||||
Sbjct: 78855 cgatggaaaagcttatcatctgtatccaaatgatggcaaaaacacacttca 78905



 Score = 99.6 bits (50), Expect = 7e-18
 Identities = 95/110 (86%)
 Strand = Plus / Plus

                                                                         
Query: 230   ggtggccataggggcttcagcaaagttatatggacggtgaaggaatatgttagtgggggt 289
             ||||| || ||||| |||||||| |||| |||||| ||||||||  ||||| |||| |||
Sbjct: 79000 ggtggtcacaggggtttcagcaatgttacatggacagtgaaggagcatgttggtggaggt 79059

                                                               
Query: 290   gactccccacacatcacactctactaccatagcttcgacggagaacaagg 339
             ||| | ||| |||||||||| |||||||||||||| ||||||||||||||
Sbjct: 79060 gacgcaccatacatcacactgtactaccatagctttgacggagaacaagg 79109



 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 70/75 (93%), Gaps = 2/75 (2%)
 Strand = Plus / Plus

                                                                         
Query: 347   ggggccctggacgtgtacgtgacgtacgagctgtcgagcccgtacgtgctgagcg-tgcg 405
             |||| |||||||| ||||||||||||| ||||||||||||||||||||||| ||| ||||
Sbjct: 88245 ggggacctggacgcgtacgtgacgtaccagctgtcgagcccgtacgtgctg-gcgctgcg 88303

                            
Query: 406   catgaacgcgacggc 420
             |||||||||||||||
Sbjct: 88304 catgaacgcgacggc 88318



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 78/95 (82%)
 Strand = Plus / Plus

                                                                         
Query: 245   ttcagcaaagttatatggacggtgaaggaatatgttagtgggggtgactccccacacatc 304
             ||||||||||| ||||||||||||||||| || ||  | || || ||||| ||  |||||
Sbjct: 88055 ttcagcaaagtcatatggacggtgaaggagtacgtcggcggcggcgactcgccgtacatc 88114

                                                
Query: 305   acactctactaccatagcttcgacggagaacaagg 339
             ||  | |||||||  |||||||||||||| |||||
Sbjct: 88115 accttgtactaccgcagcttcgacggagagcaagg 88149



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  101 bits (51), Expect = 2e-18
 Identities = 66/71 (92%)
 Strand = Plus / Plus

                                                                            
Query: 350      gccctggacgtgtacgtgacgtacgagctgtcgagcccgtacgtgctgagcgtgcgcatg 409
                ||||| |||||||||||||||||| |||||||  ||||||||||||||||||||| ||||
Sbjct: 22872512 gccctagacgtgtacgtgacgtaccagctgtccggcccgtacgtgctgagcgtgcacatg 22872571

                           
Query: 410      aacgcgacggc 420
                |||||||||||
Sbjct: 22872572 aacgcgacggc 22872582



 Score =  101 bits (51), Expect = 2e-18
 Identities = 96/111 (86%)
 Strand = Plus / Plus

                                                                            
Query: 118      ttactttggagcgcttgttggacgagtagccaacagggttgccaaggcgcgcttcgtgct 177
                ||||||||||||||| || ||||| |||||||||||  ||||||||||||| ||||||||
Sbjct: 22870020 ttactttggagcgctcgtcggacgggtagccaacagaattgccaaggcgcggttcgtgct 22870079

                                                                   
Query: 178      cgatggaaaagtgtaccacctatatgccaacgatggcaaaaacgcacttca 228
                |||||||||||  || || || ||| | || |||||||||||| |||||||
Sbjct: 22870080 cgatggaaaagcttatcatctgtatccaaatgatggcaaaaacacacttca 22870130



 Score = 99.6 bits (50), Expect = 7e-18
 Identities = 95/110 (86%)
 Strand = Plus / Plus

                                                                            
Query: 230      ggtggccataggggcttcagcaaagttatatggacggtgaaggaatatgttagtgggggt 289
                ||||| || ||||| |||||||| |||| |||||| ||||||||  ||||| |||| |||
Sbjct: 22870225 ggtggtcacaggggtttcagcaatgttacatggacagtgaaggagcatgttggtggaggt 22870284

                                                                  
Query: 290      gactccccacacatcacactctactaccatagcttcgacggagaacaagg 339
                ||| | ||| |||||||||| |||||||||||||| ||||||||||||||
Sbjct: 22870285 gacgcaccatacatcacactgtactaccatagctttgacggagaacaagg 22870334



 Score = 93.7 bits (47), Expect = 4e-16
 Identities = 70/75 (93%), Gaps = 2/75 (2%)
 Strand = Plus / Plus

                                                                            
Query: 347      ggggccctggacgtgtacgtgacgtacgagctgtcgagcccgtacgtgctgagcg-tgcg 405
                |||| |||||||| ||||||||||||| ||||||||||||||||||||||| ||| ||||
Sbjct: 22879470 ggggacctggacgcgtacgtgacgtaccagctgtcgagcccgtacgtgctg-gcgctgcg 22879528

                               
Query: 406      catgaacgcgacggc 420
                |||||||||||||||
Sbjct: 22879529 catgaacgcgacggc 22879543



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 78/95 (82%)
 Strand = Plus / Plus

                                                                            
Query: 245      ttcagcaaagttatatggacggtgaaggaatatgttagtgggggtgactccccacacatc 304
                ||||||||||| ||||||||||||||||| || ||  | || || ||||| ||  |||||
Sbjct: 22879280 ttcagcaaagtcatatggacggtgaaggagtacgtcggcggcggcgactcgccgtacatc 22879339

                                                   
Query: 305      acactctactaccatagcttcgacggagaacaagg 339
                ||  | |||||||  |||||||||||||| |||||
Sbjct: 22879340 accttgtactaccgcagcttcgacggagagcaagg 22879374



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 71/80 (88%)
 Strand = Plus / Plus

                                                                            
Query: 341      tttccgggggccctggacgtgtacgtgacgtacgagctgtcgagcccgtacgtgctgagc 400
                |||||||| | ||||||||||| |||||||||||||||| |  |||| |||||||||  |
Sbjct: 22123612 tttccgggcgacctggacgtgttcgtgacgtacgagctgccccgcccctacgtgctggcc 22123671

                                    
Query: 401      gtgcgcatgaacgcgacggc 420
                ||||||||||||||||||||
Sbjct: 22123672 gtgcgcatgaacgcgacggc 22123691



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                             
Query: 245      ttcagcaaagttatatggacggtgaagga 273
                |||||||| || |||||||||||||||||
Sbjct: 22122824 ttcagcaaggtcatatggacggtgaagga 22122852



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>dbj|AP005116.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0703B01
          Length = 137445

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 71/80 (88%)
 Strand = Plus / Plus

                                                                         
Query: 341   tttccgggggccctggacgtgtacgtgacgtacgagctgtcgagcccgtacgtgctgagc 400
             |||||||| | ||||||||||| |||||||||||||||| |  |||| |||||||||  |
Sbjct: 97511 tttccgggcgacctggacgtgttcgtgacgtacgagctgccccgcccctacgtgctggcc 97570

                                 
Query: 401   gtgcgcatgaacgcgacggc 420
             ||||||||||||||||||||
Sbjct: 97571 gtgcgcatgaacgcgacggc 97590



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 245   ttcagcaaagttatatggacggtgaagga 273
             |||||||| || |||||||||||||||||
Sbjct: 96723 ttcagcaaggtcatatggacggtgaagga 96751



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>dbj|AP006070.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:B1342F01
          Length = 153287

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 71/80 (88%)
 Strand = Plus / Plus

                                                                         
Query: 341   tttccgggggccctggacgtgtacgtgacgtacgagctgtcgagcccgtacgtgctgagc 400
             |||||||| | ||||||||||| |||||||||||||||| |  |||| |||||||||  |
Sbjct: 19456 tttccgggcgacctggacgtgttcgtgacgtacgagctgccccgcccctacgtgctggcc 19515

                                 
Query: 401   gtgcgcatgaacgcgacggc 420
             ||||||||||||||||||||
Sbjct: 19516 gtgcgcatgaacgcgacggc 19535



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 245   ttcagcaaagttatatggacggtgaagga 273
             |||||||| || |||||||||||||||||
Sbjct: 18668 ttcagcaaggtcatatggacggtgaagga 18696



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>emb|AL159152.11| Human DNA sequence from clone RP11-165N12 on chromosome 13q32.1-33.3
              Contains a novel gene, complete sequence
          Length = 160404

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 295    cccacacatcacactctactac 316
              ||||||||||||||||||||||
Sbjct: 130194 cccacacatcacactctactac 130173



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>gb|DQ235451.1| Mantidactylus microtympanum voucher ZSM 158/2002 16S ribosomal
          RNA gene, partial sequence; mitochondrial
          Length = 648

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 15 ccagccagtctccccaagcaa 35
          |||||||||||||||||||||
Sbjct: 7  ccagccagtctccccaagcaa 27



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>gb|AE012276.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 184 of
             460 of the complete genome
          Length = 11910

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 384   gcccgtacgtgctgagcgtgc 404
             |||||||||||||||||||||
Sbjct: 10179 gcccgtacgtgctgagcgtgc 10199



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>gb|AC159195.2| Mus musculus BAC clone RP23-467E1 from chromosome 13, complete sequence
          Length = 194915

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 186    aagtgtaccacctatatgcca 206
              |||||||||||||||||||||
Sbjct: 140026 aagtgtaccacctatatgcca 140006



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>gb|AC154378.2| Mus musculus BAC clone RP23-64O5 from 17, complete sequence
          Length = 232701

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 299    cacatcacactctactaccat 319
              |||||||||||||||||||||
Sbjct: 200042 cacatcacactctactaccat 200022



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>emb|CT033750.18| Mouse DNA sequence from clone RP23-263M5 on chromosome 17, complete
             sequence
          Length = 268616

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 299   cacatcacactctactaccat 319
             |||||||||||||||||||||
Sbjct: 45725 cacatcacactctactaccat 45705



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>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome
          Length = 3551823

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 400    cgtgcgcatgaacgcgacggc 420
              |||||||||||||||||||||
Sbjct: 939511 cgtgcgcatgaacgcgacggc 939531



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>gb|AC004643.1| Homo sapiens chromosome 16, cosmid clone 363E3 (LANL), complete
             sequence
          Length = 43411

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 13    ccccagccagtctccccaag 32
             ||||||||||||||||||||
Sbjct: 23123 ccccagccagtctccccaag 23142



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>emb|AL513327.34| Human DNA sequence from clone RP11-415J8 on chromosome 1 Contains the
             gene for a novel protein (FLJ35476), the gene for a novel
             protein similar to ABO family protein, two novel genes,
             the PHC2 gene for polyhomeotic-like 2 (Drosophila) and two
             CpG islands, complete sequence
          Length = 188665

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 3     ccacccatgaccccagccag 22
             ||||||||||||||||||||
Sbjct: 64894 ccacccatgaccccagccag 64875



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>gb|AC114324.2| Homo sapiens chromosome 5 clone RP11-93O17, complete sequence
          Length = 150512

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 242    ggcttcagcaaagttatatg 261
              ||||||||||||||||||||
Sbjct: 115871 ggcttcagcaaagttatatg 115890



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>emb|BX640441.1| Bordetella bronchiseptica strain RB50, complete genome; segment 5/16
          Length = 348624

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 398   agcgtgcgcatgaacgcgac 417
             ||||||||||||||||||||
Sbjct: 27585 agcgtgcgcatgaacgcgac 27566



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>emb|BX640426.1| Bordetella parapertussis strain 12822, complete genome; segment 4/14
          Length = 348866

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 398    agcgtgcgcatgaacgcgac 417
              ||||||||||||||||||||
Sbjct: 140753 agcgtgcgcatgaacgcgac 140734



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>emb|BX640419.1| Bordetella pertussis strain Tohama I, complete genome; segment 9/12
          Length = 349672

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 398   agcgtgcgcatgaacgcgac 417
             ||||||||||||||||||||
Sbjct: 94879 agcgtgcgcatgaacgcgac 94860



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>dbj|AK161810.1| Mus musculus 13 days embryo male testis cDNA, RIKEN full-length
            enriched library, clone:6030452F22 product:hypothetical
            protein, full insert sequence
          Length = 2925

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 297  cacacatcacactctactaccata 320
            ||||||||||||| ||||||||||
Sbjct: 2639 cacacatcacactatactaccata 2616



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>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 386     ccgtacgtgctgagcgtgcg 405
               ||||||||||||||||||||
Sbjct: 3006963 ccgtacgtgctgagcgtgcg 3006944



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>gb|AC108134.3| Homo sapiens chromosome 16 clone RP11-473M20, complete sequence
          Length = 180354

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 13    ccccagccagtctccccaag 32
             ||||||||||||||||||||
Sbjct: 29135 ccccagccagtctccccaag 29116



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>gb|AY084845.1| Arabidopsis thaliana clone 119313 mRNA, complete sequence
          Length = 1355

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 318 atagcttcgacggagaacaagggtttccgggg 349
           ||||||||||||| ||| |||| |||||||||
Sbjct: 598 atagcttcgacggtgaagaaggttttccgggg 629



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>gb|AY108564.1| Zea mays PCO119136 mRNA sequence
          Length = 594

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 384 gcccgtacgtgctgagcgtg 403
           ||||||||||||||||||||
Sbjct: 10  gcccgtacgtgctgagcgtg 29



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>gb|AC132954.4| Mus musculus BAC clone RP24-210F23 from 12, complete sequence
          Length = 160118

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 297   cacacatcacactctactaccata 320
             ||||||||||||| ||||||||||
Sbjct: 70020 cacacatcacactatactaccata 69997



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>gb|AC002549.1|AC002549 Homo sapiens Xp22 BAC GS-377014 (Genome Systems Human BAC library)
             complete sequence
          Length = 163027

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 11    gaccccagccagtctcccca 30
             ||||||||||||||||||||
Sbjct: 83930 gaccccagccagtctcccca 83911


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,992,979
Number of Sequences: 3902068
Number of extensions: 2992979
Number of successful extensions: 40761
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 40614
Number of HSP's gapped (non-prelim): 133
length of query: 420
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 398
effective length of database: 17,147,199,772
effective search space: 6824585509256
effective search space used: 6824585509256
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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