ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart52c06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CDC31_SCHPO (O74435) Cell division control protein 31 31 1.6
2PRTP_PRVIF (P11871) Probable processing and transport protein (I... 30 3.5
3CYAA_AERHY (Q59119) Adenylate cyclase (EC 4.6.1.1) (ATP pyrophos... 29 4.5

>CDC31_SCHPO (O74435) Cell division control protein 31|
          Length = 176

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +1

Query: 220 FDGDKDGVVTFSETYAAFRALGF 288
           FD DKD  + + E  AA RALGF
Sbjct: 46  FDSDKDNAIDYHELRAAMRALGF 68



to top

>PRTP_PRVIF (P11871) Probable processing and transport protein (Infected cell|
           protein 18.5)
          Length = 724

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
 Frame = -3

Query: 402 LVDVLDVDRIARRLIFRSGLGAKDAIDEGSAQGG-----GGVSESEGP 274
           ++ +LD DR  R  + R   G  DA  +G A GG     GGV + +GP
Sbjct: 390 MLRMLDPDRANRDALERLLEGGDDADADGGAAGGADAGDGGVGDEDGP 437



to top

>CYAA_AERHY (Q59119) Adenylate cyclase (EC 4.6.1.1) (ATP pyrophosphate-lyase)|
           (Adenylyl cyclase)
          Length = 843

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +1

Query: 289 GYAASTLSATFINGVLGPQTRPENETARYSIYIENIHK 402
           GY +  +S  + NG+L PQ+R         ++I+N+H+
Sbjct: 487 GYISKLVSWAYFNGLLTPQSRVHLFNQGSDLHIDNLHQ 524


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.314    0.129    0.363 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,262,214
Number of Sequences: 219361
Number of extensions: 817716
Number of successful extensions: 2161
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2161
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2618960580
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
to top