ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart52c04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ATL4J_ARATH (Q5XF85) RING-H2 finger protein ATL4J precursor 46 3e-05
2ATL2D_ARATH (Q9SL78) Putative RING-H2 finger protein ATL2D precu... 44 1e-04
3ATL5C_ARATH (Q5EAE9) RING-H2 finger protein ATL5C precursor 43 4e-04

>ATL4J_ARATH (Q5XF85) RING-H2 finger protein ATL4J precursor|
          Length = 432

 Score = 46.2 bits (108), Expect = 3e-05
 Identities = 20/44 (45%), Positives = 31/44 (70%), Gaps = 3/44 (6%)
 Frame = +3

Query: 243 ETPP---GAGVRVSFRPSVAIVVGIFTMIFSLTFLLLMYAKFCH 365
           +TPP      +  +F PS+A+V G+  ++F+LTF+LL+YAK CH
Sbjct: 19  QTPPPFRNGDLVANFEPSLAVVTGVLAIMFALTFVLLVYAKCCH 62



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>ATL2D_ARATH (Q9SL78) Putative RING-H2 finger protein ATL2D precursor (RING-H2|
           finger protein ATL12)
          Length = 390

 Score = 44.3 bits (103), Expect = 1e-04
 Identities = 17/30 (56%), Positives = 27/30 (90%)
 Frame = +3

Query: 276 FRPSVAIVVGIFTMIFSLTFLLLMYAKFCH 365
           F+PS+AI+ G+F+++F+LTF+LL+YAK  H
Sbjct: 37  FKPSLAIITGVFSIVFTLTFVLLVYAKCFH 66



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>ATL5C_ARATH (Q5EAE9) RING-H2 finger protein ATL5C precursor|
          Length = 407

 Score = 42.7 bits (99), Expect = 4e-04
 Identities = 18/38 (47%), Positives = 23/38 (60%)
 Frame = +3

Query: 249 PPGAGVRVSFRPSVAIVVGIFTMIFSLTFLLLMYAKFC 362
           PP      S  P +A+V+ + T  FSLTFLLL+Y K C
Sbjct: 45  PPRHNFTSSLMPGIAVVIAVLTAFFSLTFLLLLYVKHC 82


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,042,427
Number of Sequences: 219361
Number of extensions: 675133
Number of successful extensions: 1996
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1973
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1996
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2453576370
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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