ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart52c04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_476040.1| Oryza sativa (japonica cultivar-group), predic... 127 3e-26
2gb|AC136217.4| Oryza sativa (japonica cultivar-group) chromosome... 127 3e-26
3dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 127 3e-26
4dbj|AK070817.1| Oryza sativa (japonica cultivar-group) cDNA clon... 127 3e-26
5gb|AC144455.5| Oryza sativa (japonica cultivar-group) chromosome... 127 3e-26
6dbj|AK125309.1| Homo sapiens cDNA FLJ43319 fis, clone NT2RI2019751 48 0.024
7gb|AC112654.2| Homo sapiens X BAC RP11-44F2 (Roswell Park Cancer... 48 0.024
8ref|XM_942525.1| PREDICTED: Homo sapiens hypothetical protein LO... 48 0.024
9ref|XM_946073.1| PREDICTED: Homo sapiens hypothetical protein LO... 48 0.024
10ref|XM_928377.1| PREDICTED: Homo sapiens hypothetical protein LO... 48 0.024
11ref|XM_932823.1| PREDICTED: Homo sapiens hypothetical protein LO... 48 0.024
12gb|AC015914.8| Homo sapiens chromosome 15, clone RP11-111E14, co... 46 0.094
13gb|AC021541.7| Homo sapiens chromosome 15, clone RP11-505L16, co... 46 0.094
14gb|AC140311.2| Mus musculus BAC clone RP23-392M3 from chromosome... 44 0.37
15emb|AL135913.8| Human DNA sequence from clone RP1-44I20 on chrom... 44 0.37
16emb|AL078605.30|HSJ894D12 Human DNA sequence from clone RP5-894D... 44 0.37
17gb|AC108120.3| Homo sapiens chromosome 5 clone RP11-524L6, compl... 44 0.37
18gb|AC120113.2| Homo sapiens chromosome 5 clone CTD-2324F19, comp... 44 0.37
19emb|AL807800.7| Mouse DNA sequence from clone RP23-438D2 on chro... 44 0.37
20emb|AL928593.4| Mouse DNA sequence from clone RP23-100E9 on chro... 44 0.37
21ref|XM_427753.1| PREDICTED: Gallus gallus similar to sulfate tra... 42 1.5
22ref|XM_425182.1| PREDICTED: Gallus gallus similar to Sulfate tra... 42 1.5
23ref|XM_584149.2| PREDICTED: Bos taurus similar to Leo1, Paf1/RNA... 42 1.5
24ref|XM_865076.1| PREDICTED: Bos taurus similar to Leo1, Paf1/RNA... 42 1.5
25gb|AF258601.2| Mus musculus urea transporter isoform UT-A5 mRNA,... 42 1.5
26gb|AC112792.4| Mus musculus BAC clone RP23-192J17 from 18, compl... 42 1.5
27gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete ... 42 1.5
28gb|AF366052.2| Mus musculus urea transporter isoform UT-A1 mRNA,... 42 1.5
29gb|AC144548.8| Homo sapiens 12 BAC RP11-478C19 (Roswell Park Can... 42 1.5
30gb|AC182359.3| Spermophilus tridecemlineatus clone VMRC20-329J14... 42 1.5
31gb|AE012041.1| Xanthomonas axonopodis pv. citri str. 306, secti... 42 1.5
32gb|AC151294.3| Mus musculus BAC clone RP23-137I7 from chromosome... 42 1.5
33dbj|AK032837.1| Mus musculus 12 days embryo male wolffian duct i... 42 1.5
34gb|AF203341.1|AF203341 Glycine max chloroplast carboxyl transfer... 42 1.5
35gb|AF258602.1|AF258602 Mus musculus urea transporter isoform UTA... 42 1.5
36ref|NM_207651.2| Mus musculus solute carrier family 14 (urea tra... 42 1.5
37ref|NM_030683.1| Mus musculus solute carrier family 14 (urea tra... 42 1.5
38gb|AF170528.1|AF170528 Oryctolagus cuniculus glycoprotein IIb (G... 42 1.5
39gb|BC087456.1| Xenopus laevis hypothetical LOC496053, mRNA (cDNA... 42 1.5
40ref|XM_549935.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.8
41gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence 40 5.8
42ref|XM_478273.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.8
43gb|AY023015.1| Oryza sativa microsatellite MRG5340 containing (G... 40 5.8
44gb|AC009463.9| Trypanosoma brucei chromosome 2 clone RPCI93-30J2... 40 5.8
45gb|AE017150.2| Trypanosoma brucei chromosome 2, complete sequence 40 5.8
46gb|AC135569.6| Oryza sativa (japonica cultivar-group) chromosome... 40 5.8
47gb|AC135920.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.8
48gb|AY657037.1| Synthetic construct Peudomonas aeruginosa clone F... 40 5.8
49gb|AC132421.4| Mus musculus BAC clone RP23-294G5 from chromosome... 40 5.8
50gb|AF161801.5| Homo sapiens chromosome 8 clone GS1-2g21 map p12,... 40 5.8
51gb|AC165174.2| Zea mays clone ZMMBBb-127F19, complete sequence 40 5.8
52ref|XM_946596.1| Trypanosoma brucei TREU927 chaperone protein (d... 40 5.8
53gb|DP000044.2| Callithrix jacchus target 106 genomic scaffold 40 5.8
54emb|AL031431.8|HS462O23 Human DNA sequence from clone RP3-462O23... 40 5.8
55emb|AL645982.26| Mouse DNA sequence from clone DN-452A22 on chro... 40 5.8
56gb|AC100818.2| Homo sapiens chromosome 8, clone RP11-473J6, comp... 40 5.8
57gb|AE010191.1| Pyrococcus furiosus DSM 3638, section 66 of 173 o... 40 5.8
58gb|S51239.1| calreticulin [Aplysia californica=marine snails, mR... 40 5.8
59dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
60dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
61dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
62dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
63gb|AC018889.7| Homo sapiens BAC clone RP11-479F13 from 2, comple... 40 5.8
64gb|AE004525.1| Pseudomonas aeruginosa PAO1, section 86 of 529 of... 40 5.8
65gb|AC016951.9| Homo sapiens 3 BAC RP11-452H12 (Roswell Park Canc... 40 5.8
66ref|XM_225880.3| PREDICTED: Rattus norvegicus similar to Hypothe... 40 5.8
67dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete g... 40 5.8
68dbj|AP002541.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
69dbj|AP002868.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
70emb|BX842598.1| Neurospora crassa DNA linkage group II BAC clone... 40 5.8
71dbj|AP005186.4| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
72emb|AL627327.29| Mouse DNA sequence from clone RP23-62O17 on chr... 40 5.8
73dbj|AK069504.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.8
74gb|AF123535.1| Zea mays alcohol dehydrogenase 1 (adh1) gene, adh... 40 5.8
75gb|AY691949.1| Zea mays alcohol dehydrogenase 1 (adh1A) gene, co... 40 5.8
76gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 5.8
77gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 5.8
78emb|AL731873.5|CNS08C8D Oryza sativa chromosome 12, . BAC OSJNBa... 40 5.8
79emb|AL672182.18| Mouse DNA sequence from clone RP23-293I3 on chr... 40 5.8
80emb|AL662862.16| Mouse DNA sequence from clone CT7-139P23 on chr... 40 5.8
81emb|AL691478.5| Mouse DNA sequence from clone RP23-137F6 on chro... 40 5.8 
>ref|XM_476040.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1158

 Score =  127 bits (64), Expect = 3e-26
 Identities = 88/96 (91%)
 Strand = Plus / Plus

                                                                       
Query: 269 ggtgtcgttccggccgagcgtggccatcgtggtgggcatcttcaccatgatcttctccct 328
           |||||||||||| || ||||| |||||||| || ||||||||||||||||||||||| ||
Sbjct: 135 ggtgtcgttccgccccagcgtagccatcgtcgttggcatcttcaccatgatcttctcgct 194

                                               
Query: 329 caccttcctcctcctcatgtacgccaagttctgcca 364
           ||||||||| ||||||||||||||||| ||||||||
Sbjct: 195 caccttccttctcctcatgtacgccaaattctgcca 230
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>gb|AC136217.4| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0030I14,
              complete sequence
          Length = 159035

 Score =  127 bits (64), Expect = 3e-26
 Identities = 88/96 (91%)
 Strand = Plus / Plus

                                                                          
Query: 269    ggtgtcgttccggccgagcgtggccatcgtggtgggcatcttcaccatgatcttctccct 328
              |||||||||||| || ||||| |||||||| || ||||||||||||||||||||||| ||
Sbjct: 146112 ggtgtcgttccgccccagcgtagccatcgtcgttggcatcttcaccatgatcttctcgct 146171

                                                  
Query: 329    caccttcctcctcctcatgtacgccaagttctgcca 364
              ||||||||| ||||||||||||||||| ||||||||
Sbjct: 146172 caccttccttctcctcatgtacgccaaattctgcca 146207
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  127 bits (64), Expect = 3e-26
 Identities = 88/96 (91%)
 Strand = Plus / Plus

                                                                            
Query: 269      ggtgtcgttccggccgagcgtggccatcgtggtgggcatcttcaccatgatcttctccct 328
                |||||||||||| || ||||| |||||||| || ||||||||||||||||||||||| ||
Sbjct: 29498087 ggtgtcgttccgccccagcgtagccatcgtcgttggcatcttcaccatgatcttctcgct 29498146

                                                    
Query: 329      caccttcctcctcctcatgtacgccaagttctgcca 364
                ||||||||| ||||||||||||||||| ||||||||
Sbjct: 29498147 caccttccttctcctcatgtacgccaaattctgcca 29498182



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 57      agctcatccatccatggcgc 76
               ||||||||||||||||||||
Sbjct: 6394463 agctcatccatccatggcgc 6394444
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>dbj|AK070817.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023066I04, full
           insert sequence
          Length = 1485

 Score =  127 bits (64), Expect = 3e-26
 Identities = 88/96 (91%)
 Strand = Plus / Plus

                                                                       
Query: 269 ggtgtcgttccggccgagcgtggccatcgtggtgggcatcttcaccatgatcttctccct 328
           |||||||||||| || ||||| |||||||| || ||||||||||||||||||||||| ||
Sbjct: 204 ggtgtcgttccgccccagcgtagccatcgtcgttggcatcttcaccatgatcttctcgct 263

                                               
Query: 329 caccttcctcctcctcatgtacgccaagttctgcca 364
           ||||||||| ||||||||||||||||| ||||||||
Sbjct: 264 caccttccttctcctcatgtacgccaaattctgcca 299
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>gb|AC144455.5| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBb0086G17, complete sequence
          Length = 134631

 Score =  127 bits (64), Expect = 3e-26
 Identities = 88/96 (91%)
 Strand = Plus / Plus

                                                                         
Query: 269   ggtgtcgttccggccgagcgtggccatcgtggtgggcatcttcaccatgatcttctccct 328
             |||||||||||| || ||||| |||||||| || ||||||||||||||||||||||| ||
Sbjct: 82357 ggtgtcgttccgccccagcgtagccatcgtcgttggcatcttcaccatgatcttctcgct 82416

                                                 
Query: 329   caccttcctcctcctcatgtacgccaagttctgcca 364
             ||||||||| ||||||||||||||||| ||||||||
Sbjct: 82417 caccttccttctcctcatgtacgccaaattctgcca 82452
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>dbj|AK125309.1| Homo sapiens cDNA FLJ43319 fis, clone NT2RI2019751
          Length = 3934

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 224 cgcgcagccggcggcggaggagac 247
           ||||||||||||||||||||||||
Sbjct: 692 cgcgcagccggcggcggaggagac 669
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>gb|AC112654.2| Homo sapiens X BAC RP11-44F2 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 107921

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                     
Query: 224   cgcgcagccggcggcggaggagac 247
             ||||||||||||||||||||||||
Sbjct: 10260 cgcgcagccggcggcggaggagac 10237
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>ref|XM_942525.1| PREDICTED: Homo sapiens hypothetical protein LOC652836 (LOC652836),
           mRNA
          Length = 387

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 224 cgcgcagccggcggcggaggagac 247
           ||||||||||||||||||||||||
Sbjct: 336 cgcgcagccggcggcggaggagac 313
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>ref|XM_946073.1| PREDICTED: Homo sapiens hypothetical protein LOC652835 (LOC652835),
           mRNA
          Length = 4047

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 224 cgcgcagccggcggcggaggagac 247
           ||||||||||||||||||||||||
Sbjct: 813 cgcgcagccggcggcggaggagac 790
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>ref|XM_928377.1| PREDICTED: Homo sapiens hypothetical protein LOC645343 (LOC645343),
           mRNA
          Length = 387

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 224 cgcgcagccggcggcggaggagac 247
           ||||||||||||||||||||||||
Sbjct: 336 cgcgcagccggcggcggaggagac 313
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>ref|XM_932823.1| PREDICTED: Homo sapiens hypothetical protein LOC645337 (LOC645337),
           mRNA
          Length = 4049

 Score = 48.1 bits (24), Expect = 0.024
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 224 cgcgcagccggcggcggaggagac 247
           ||||||||||||||||||||||||
Sbjct: 813 cgcgcagccggcggcggaggagac 790
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>gb|AC015914.8| Homo sapiens chromosome 15, clone RP11-111E14, complete sequence
          Length = 170078

 Score = 46.1 bits (23), Expect = 0.094
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 167   catggccaaaaccctgctgctcctgct 193
             |||||||||| ||||||||||||||||
Sbjct: 42517 catggccaaagccctgctgctcctgct 42491
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>gb|AC021541.7| Homo sapiens chromosome 15, clone RP11-505L16, complete sequence
          Length = 194023

 Score = 46.1 bits (23), Expect = 0.094
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 167   catggccaaaaccctgctgctcctgct 193
             |||||||||| ||||||||||||||||
Sbjct: 12380 catggccaaagccctgctgctcctgct 12406
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>gb|AC140311.2| Mus musculus BAC clone RP23-392M3 from chromosome 9, complete sequence
          Length = 195460

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 319   tcttctccctcaccttcctcctcctc 344
             ||||||||||| ||||||||||||||
Sbjct: 66770 tcttctccctccccttcctcctcctc 66745
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>emb|AL135913.8| Human DNA sequence from clone RP1-44I20 on chromosome 6, complete
           sequence
          Length = 44006

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 319 tcttctccctcaccttcctcctcctc 344
           ||||||||||| ||||||||||||||
Sbjct: 952 tcttctccctctccttcctcctcctc 977
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>emb|AL078605.30|HSJ894D12 Human DNA sequence from clone RP5-894D12 on chromosome 6q26-27 Contains
             the 5' end of the gene for KIAA1838, the DLL1 gene for
             delta-like 1 (mouse) homolog, the 3' end of a novel gene
             and 5 CpG islands, complete sequence
          Length = 119563

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 319   tcttctccctcaccttcctcctcctc 344
             ||||||||||| ||||||||||||||
Sbjct: 98592 tcttctccctctccttcctcctcctc 98567
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>gb|AC108120.3| Homo sapiens chromosome 5 clone RP11-524L6, complete sequence
          Length = 212755

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 319    tcttctccctcaccttcctcctcctc 344
              |||||| |||||||||||||||||||
Sbjct: 144327 tcttcttcctcaccttcctcctcctc 144352
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>gb|AC120113.2| Homo sapiens chromosome 5 clone CTD-2324F19, complete sequence
          Length = 129346

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 319  tcttctccctcaccttcctcctcctc 344
            |||||| |||||||||||||||||||
Sbjct: 4521 tcttcttcctcaccttcctcctcctc 4546
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>emb|AL807800.7| Mouse DNA sequence from clone RP23-438D2 on chromosome 2, complete
             sequence
          Length = 176808

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 319   tcttctccctcaccttcctcctcctc 344
             |||||||||||||||||||| |||||
Sbjct: 36280 tcttctccctcaccttcctcttcctc 36305
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>emb|AL928593.4| Mouse DNA sequence from clone RP23-100E9 on chromosome 2, complete
              sequence
          Length = 195840

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 182    gctgctcctgctggtatgtggg 203
              ||||||||||||||||||||||
Sbjct: 175546 gctgctcctgctggtatgtggg 175525
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>ref|XM_427753.1| PREDICTED: Gallus gallus similar to sulfate transporter
           (LOC430198), partial mRNA
          Length = 651

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 226 cgcagccggcggcggaggaga 246
           |||||||||||||||||||||
Sbjct: 485 cgcagccggcggcggaggaga 465
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>ref|XM_425182.1| PREDICTED: Gallus gallus similar to Sulfate transporter (Diastrophic
            dysplasia protein) (LOC427610), partial mRNA
          Length = 2951

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 226  cgcagccggcggcggaggaga 246
            |||||||||||||||||||||
Sbjct: 2785 cgcagccggcggcggaggaga 2765
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>ref|XM_584149.2| PREDICTED: Bos taurus similar to Leo1, Paf1/RNA polymerase II complex
            component, homolog, transcript variant 1 (LOC507524),
            mRNA
          Length = 1980

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 326  cctcaccttcctcctcctcat 346
            |||||||||||||||||||||
Sbjct: 1593 cctcaccttcctcctcctcat 1573
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>ref|XM_865076.1| PREDICTED: Bos taurus similar to Leo1, Paf1/RNA polymerase II complex
            component, homolog, transcript variant 2 (LOC507524),
            mRNA
          Length = 2155

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 326  cctcaccttcctcctcctcat 346
            |||||||||||||||||||||
Sbjct: 1768 cctcaccttcctcctcctcat 1748
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>gb|AF258601.2| Mus musculus urea transporter isoform UT-A5 mRNA, complete cds
          Length = 1451

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 325  ccctcaccttcctcctcctca 345
            |||||||||||||||||||||
Sbjct: 1074 ccctcaccttcctcctcctca 1094
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>gb|AC112792.4| Mus musculus BAC clone RP23-192J17 from 18, complete sequence
          Length = 219784

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 325    ccctcaccttcctcctcctca 345
              |||||||||||||||||||||
Sbjct: 131984 ccctcaccttcctcctcctca 131964
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>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence
          Length = 3806533

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 219     gcacacgcgcagccggcggcg 239
               |||||||||||||||||||||
Sbjct: 2730013 gcacacgcgcagccggcggcg 2729993
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>gb|AF366052.2| Mus musculus urea transporter isoform UT-A1 mRNA, complete cds
          Length = 4047

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 325  ccctcaccttcctcctcctca 345
            |||||||||||||||||||||
Sbjct: 1692 ccctcaccttcctcctcctca 1712
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>gb|AC144548.8| Homo sapiens 12 BAC RP11-478C19 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 174974

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 298   tggtgggcatcttcaccatga 318
             |||||||||||||||||||||
Sbjct: 42954 tggtgggcatcttcaccatga 42974
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>gb|AC182359.3| Spermophilus tridecemlineatus clone VMRC20-329J14, complete sequence
          Length = 154296

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 309   ttcaccatgatcttctccctcacct 333
             ||||||||||| |||||||||||||
Sbjct: 92182 ttcaccatgatgttctccctcacct 92158
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>gb|AE012041.1| Xanthomonas axonopodis pv. citri str. 306,  section 419 of 469 of the
            complete genome
          Length = 12145

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 385  tgccggcgaccaccaccgcca 405
            |||||||||||||||||||||
Sbjct: 5701 tgccggcgaccaccaccgcca 5721
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>gb|AC151294.3| Mus musculus BAC clone RP23-137I7 from chromosome 17, complete sequence
          Length = 206868

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 322   tctccctcaccttcctcctcc 342
             |||||||||||||||||||||
Sbjct: 91986 tctccctcaccttcctcctcc 91966
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>dbj|AK032837.1| Mus musculus 12 days embryo male wolffian duct includes surrounding
           region cDNA, RIKEN full-length enriched library,
           clone:6720460J07 product:solute carrier family 14 (urea
           transporter), member 2, full insert sequence
          Length = 2643

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 325 ccctcaccttcctcctcctca 345
           |||||||||||||||||||||
Sbjct: 304 ccctcaccttcctcctcctca 324
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>gb|AF203341.1|AF203341 Glycine max chloroplast carboxyl transferase alpha subunit (accA-4)
             nuclear pseudogene, partial sequence; and putative steroid
             reductase gene, complete cds
          Length = 14601

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 319   tcttctccctcaccttcctcc 339
             |||||||||||||||||||||
Sbjct: 10247 tcttctccctcaccttcctcc 10227
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>gb|AF258602.1|AF258602 Mus musculus urea transporter isoform UTA-3 mRNA, complete cds
          Length = 1971

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 325  ccctcaccttcctcctcctca 345
            |||||||||||||||||||||
Sbjct: 1601 ccctcaccttcctcctcctca 1621
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>ref|NM_207651.2| Mus musculus solute carrier family 14 (urea transporter), member 2
            (Slc14a2), transcript variant 1, mRNA
          Length = 4047

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 325  ccctcaccttcctcctcctca 345
            |||||||||||||||||||||
Sbjct: 1692 ccctcaccttcctcctcctca 1712
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>ref|NM_030683.1| Mus musculus solute carrier family 14 (urea transporter), member 2
            (Slc14a2), transcript variant 2, mRNA
          Length = 1971

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 325  ccctcaccttcctcctcctca 345
            |||||||||||||||||||||
Sbjct: 1601 ccctcaccttcctcctcctca 1621
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>gb|AF170528.1|AF170528 Oryctolagus cuniculus glycoprotein IIb (GPIIb) mRNA, complete cds
          Length = 3291

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 285 agcgtggccatcgtggtgggc 305
           |||||||||||||||||||||
Sbjct: 219 agcgtggccatcgtggtgggc 239
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>gb|BC087456.1| Xenopus laevis hypothetical LOC496053, mRNA (cDNA clone MGC:99278
           IMAGE:7211088), complete cds
          Length = 1978

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 323 ctccctcaccttcctcctcct 343
           |||||||||||||||||||||
Sbjct: 161 ctccctcaccttcctcctcct 181
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>ref|XM_549935.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1569

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 322 tctccctcaccttcctcctc 341
           ||||||||||||||||||||
Sbjct: 95  tctccctcaccttcctcctc 114
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>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence
          Length = 3587082

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 220     cacacgcgcagccggcggcg 239
               ||||||||||||||||||||
Sbjct: 3515150 cacacgcgcagccggcggcg 3515131
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>ref|XM_478273.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1464

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 320  cttctccctcaccttcctcc 339
            ||||||||||||||||||||
Sbjct: 1344 cttctccctcaccttcctcc 1325
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>gb|AY023015.1| Oryza sativa microsatellite MRG5340 containing (GAA)X8, genomic
           sequence
          Length = 224

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 322 tctccctcaccttcctcctc 341
           ||||||||||||||||||||
Sbjct: 197 tctccctcaccttcctcctc 178
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>gb|AC009463.9| Trypanosoma brucei chromosome 2 clone RPCI93-30J2, complete sequence
          Length = 45856

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 2    ccgcatcatcgtcgtcgtcg 21
            ||||||||||||||||||||
Sbjct: 9743 ccgcatcatcgtcgtcgtcg 9724
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>gb|AE017150.2| Trypanosoma brucei chromosome 2, complete sequence
          Length = 1193948

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 2      ccgcatcatcgtcgtcgtcg 21
              ||||||||||||||||||||
Sbjct: 912015 ccgcatcatcgtcgtcgtcg 911996
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>gb|AC135569.6| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0018F17, complete sequence
          Length = 104291

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 227   gcagccggcggcggaggaga 246
             ||||||||||||||||||||
Sbjct: 74731 gcagccggcggcggaggaga 74750
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>gb|AC135920.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0015G13, complete sequence
          Length = 143966

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 57    agctcatccatccatggcgc 76
             ||||||||||||||||||||
Sbjct: 96202 agctcatccatccatggcgc 96183
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>gb|AY657037.1| Synthetic construct Peudomonas aeruginosa clone FLH031774.01F
           PA0909 gene, partial cds
          Length = 276

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 413 ccgcgcgcctgcaacagcag 432
           ||||||||||||||||||||
Sbjct: 245 ccgcgcgcctgcaacagcag 226
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>gb|AC132421.4| Mus musculus BAC clone RP23-294G5 from chromosome 18, complete sequence
          Length = 229447

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 319    tcttctccctcaccttcctcctcc 342
              ||||||||||| ||||||||||||
Sbjct: 140568 tcttctccctccccttcctcctcc 140545
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>gb|AF161801.5| Homo sapiens chromosome 8 clone GS1-2g21 map p12, complete sequence
          Length = 138341

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 166   gcatggccaaaaccctgctg 185
             ||||||||||||||||||||
Sbjct: 47247 gcatggccaaaaccctgctg 47266
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>gb|AC165174.2| Zea mays clone ZMMBBb-127F19, complete sequence
          Length = 187659

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 5      catcatcgtcgtcgtcgggc 24
              ||||||||||||||||||||
Sbjct: 131226 catcatcgtcgtcgtcgggc 131245
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>ref|XM_946596.1| Trypanosoma brucei TREU927 chaperone protein (dnaJ) partial mRNA
          Length = 1215

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 2    ccgcatcatcgtcgtcgtcg 21
            ||||||||||||||||||||
Sbjct: 1174 ccgcatcatcgtcgtcgtcg 1155
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>gb|DP000044.2| Callithrix jacchus target 106 genomic scaffold
          Length = 574594

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 319    tcttctccctcaccttcctcctcc 342
              ||||||||||| ||||||||||||
Sbjct: 538923 tcttctccctccccttcctcctcc 538946
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>emb|AL031431.8|HS462O23 Human DNA sequence from clone RP3-462O23 on chromosome 1p35.1-36.12
             Contains the 3' end of the gene for sister-of-mammalian
             grainyhead (SOM), a novel gene (LOC90529) and a novel gene
             (DJ462O23.2), complete sequence
          Length = 154154

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 165   ggcatggccaaaaccctgct 184
             ||||||||||||||||||||
Sbjct: 72430 ggcatggccaaaaccctgct 72411
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>emb|AL645982.26| Mouse DNA sequence from clone DN-452A22 on chromosome 3 Contains the 5'
              end of the Fgf2 gene for fibroblast growth factor 2, a
              novel gene (A930011G24RIK), a mitochondrial ribosomal
              protein S33 (Mrps33) pseudogene, a novel gene (gene model
              1805 (NCBI) (Gm1805)), the Cetn4 gene for centrin 4, a
              novel gene, the 5' end of the Il21 gene for interleukin 21
              and a CpG island, complete sequence
          Length = 133023

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 322    tctccctcaccttcctcctc 341
              ||||||||||||||||||||
Sbjct: 125126 tctccctcaccttcctcctc 125107
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>gb|AC100818.2| Homo sapiens chromosome 8, clone RP11-473J6, complete sequence
          Length = 178856

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 166   gcatggccaaaaccctgctg 185
             ||||||||||||||||||||
Sbjct: 90400 gcatggccaaaaccctgctg 90381
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>gb|AE010191.1| Pyrococcus furiosus DSM 3638, section 66 of 173 of the complete
            genome
          Length = 10257

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 319  tcttctccctcaccttcctc 338
            ||||||||||||||||||||
Sbjct: 8410 tcttctccctcaccttcctc 8391
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>gb|S51239.1| calreticulin [Aplysia californica=marine snails, mRNA, 1862 nt]
          Length = 1862

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 319  tcttctccctcaccttcctcctcctcat 346
            |||||| ||||| |||||||||||||||
Sbjct: 1232 tcttcttcctcagcttcctcctcctcat 1205
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 386      gccggcgaccaccaccgcca 405
                ||||||||||||||||||||
Sbjct: 14930945 gccggcgaccaccaccgcca 14930964
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 227      gcagccggcggcggaggaga 246
                ||||||||||||||||||||
Sbjct: 17100755 gcagccggcggcggaggaga 17100774
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 320      cttctccctcaccttcctcc 339
                ||||||||||||||||||||
Sbjct: 18954635 cttctccctcaccttcctcc 18954654
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 322     tctccctcaccttcctcctc 341
               ||||||||||||||||||||
Sbjct: 1058636 tctccctcaccttcctcctc 1058617
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>gb|AC018889.7| Homo sapiens BAC clone RP11-479F13 from 2, complete sequence
          Length = 94084

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 325   ccctcaccttcctcctcctc 344
             ||||||||||||||||||||
Sbjct: 81600 ccctcaccttcctcctcctc 81619
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>gb|AE004525.1| Pseudomonas aeruginosa PAO1, section 86 of 529 of the complete genome
          Length = 10434

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 413  ccgcgcgcctgcaacagcag 432
            ||||||||||||||||||||
Sbjct: 4535 ccgcgcgcctgcaacagcag 4516
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>gb|AC016951.9| Homo sapiens 3 BAC RP11-452H12 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 147929

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 325    ccctcaccttcctcctcctc 344
              ||||||||||||||||||||
Sbjct: 142867 ccctcaccttcctcctcctc 142886
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>ref|XM_225880.3| PREDICTED: Rattus norvegicus similar to Hypothetical protein KIAA0233
            (predicted) (LOC307380), mRNA
          Length = 9223

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 326  cctcaccttcctcctcctca 345
            ||||||||||||||||||||
Sbjct: 2405 cctcaccttcctcctcctca 2386
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>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome
          Length = 3147090

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 1       accgcatcatcgtcgtcgtc 20
               ||||||||||||||||||||
Sbjct: 1907096 accgcatcatcgtcgtcgtc 1907077
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>dbj|AP002541.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0494A10
          Length = 145576

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 322   tctccctcaccttcctcctc 341
             ||||||||||||||||||||
Sbjct: 96304 tctccctcaccttcctcctc 96285
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>dbj|AP002868.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0698A04
          Length = 141079

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 322   tctccctcaccttcctcctc 341
             ||||||||||||||||||||
Sbjct: 27950 tctccctcaccttcctcctc 27931
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>emb|BX842598.1| Neurospora crassa DNA linkage group II BAC clone B8L10
          Length = 73541

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 26    acttcgttcggttccactcc 45
             ||||||||||||||||||||
Sbjct: 40664 acttcgttcggttccactcc 40645
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>dbj|AP005186.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0430F03
          Length = 183095

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 320   cttctccctcaccttcctcc 339
             ||||||||||||||||||||
Sbjct: 56620 cttctccctcaccttcctcc 56639
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>emb|AL627327.29| Mouse DNA sequence from clone RP23-62O17 on chromosome 4, complete
              sequence
          Length = 249562

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 320    cttctccctcaccttcctcctcct 343
              |||||||||| |||||||||||||
Sbjct: 239583 cttctccctctccttcctcctcct 239560
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>dbj|AK069504.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023019E20,
          full insert sequence
          Length = 2785

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 57 agctcatccatccatggcgc 76
          ||||||||||||||||||||
Sbjct: 80 agctcatccatccatggcgc 99
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>gb|AF123535.1| Zea mays alcohol dehydrogenase 1 (adh1) gene, adh1-F allele, complete
             cds
          Length = 160480

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 5     catcatcgtcgtcgtcgggc 24
             ||||||||||||||||||||
Sbjct: 55107 catcatcgtcgtcgtcgggc 55088
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>gb|AY691949.1| Zea mays alcohol dehydrogenase 1 (adh1A) gene, complete cds; Fourf
             copia_LTR and Huck gypsy_LTR retrotransposons, complete
             sequence; Opie2 copia_LTR retrotransposon Zeon gypsy_LTR
             and Opie1 copia_LTR retrotransposons, complete sequence;
             Ji copia_LTR retrotransposon, complete sequence; and
             unknown protein (adh1B), cyclin H-1 (adh1C), unknown
             protein (adh1D), hypothetical protein (adh1E), and unknown
             protein (adh1F) genes, complete cds
          Length = 126039

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 5     catcatcgtcgtcgtcgggc 24
             ||||||||||||||||||||
Sbjct: 32335 catcatcgtcgtcgtcgggc 32316
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 227      gcagccggcggcggaggaga 246
                ||||||||||||||||||||
Sbjct: 17195456 gcagccggcggcggaggaga 17195475
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 386      gccggcgaccaccaccgcca 405
                ||||||||||||||||||||
Sbjct: 14885228 gccggcgaccaccaccgcca 14885247
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>emb|AL731873.5|CNS08C8D Oryza sativa chromosome 12, . BAC OSJNBa0068D20 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 174521

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 386    gccggcgaccaccaccgcca 405
              ||||||||||||||||||||
Sbjct: 150902 gccggcgaccaccaccgcca 150883
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>emb|AL672182.18| Mouse DNA sequence from clone RP23-293I3 on chromosome 11, complete
             sequence
          Length = 211363

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 324   tccctcaccttcctcctcctcatg 347
             |||||||||||||| |||||||||
Sbjct: 72001 tccctcaccttcctgctcctcatg 71978
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>emb|AL662862.16| Mouse DNA sequence from clone CT7-139P23 on chromosome 3, complete
             sequence
          Length = 120808

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 322   tctccctcaccttcctcctc 341
             ||||||||||||||||||||
Sbjct: 44130 tctccctcaccttcctcctc 44111
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>emb|AL691478.5| Mouse DNA sequence from clone RP23-137F6 on chromosome 3, complete
              sequence
          Length = 120928

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 322    tctccctcaccttcctcctc 341
              ||||||||||||||||||||
Sbjct: 105387 tctccctcaccttcctcctc 105368


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,615,778
Number of Sequences: 3902068
Number of extensions: 4615778
Number of successful extensions: 118071
Number of sequences better than 10.0: 83
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 117021
Number of HSP's gapped (non-prelim): 1050
length of query: 433
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 411
effective length of database: 17,147,199,772
effective search space: 7047499106292
effective search space used: 7047499106292
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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