ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart52b10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK069590.1| Oryza sativa (japonica cultivar-group) cDNA clon... 295 5e-77
2ref|NM_191252.1| Oryza sativa (japonica cultivar-group), predic... 161 2e-36
3dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 86 9e-14
4dbj|AP003249.3| Oryza sativa (japonica cultivar-group) genomic D... 86 9e-14
5dbj|AP003237.2| Oryza sativa (japonica cultivar-group) genomic D... 86 9e-14
6ref|NM_100534.2| Arabidopsis thaliana 3-hydroxyisobutyryl-CoA hy... 52 0.001
7dbj|AK221578.1| Arabidopsis thaliana mRNA for 3-hydroxyisobutyry... 52 0.001
8gb|BT022051.1| Arabidopsis thaliana At1g06550 gene, complete cds 52 0.001
9gb|AC007592.4|AC007592 Genomic sequence for Arabidopsis thaliana... 52 0.001
10gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome 44 0.30
11emb|AL805969.13| Mouse DNA sequence from clone RP23-40L1 on chro... 44 0.30
12emb|CR753838.10| Zebrafish DNA sequence from clone DKEY-189H5 in... 42 1.2
13emb|CT797314.2| Pan troglodytes chromosome X clone CH251-171B18 ... 42 1.2
14gb|BC116469.1| Danio rerio cDNA clone MGC:136239 IMAGE:7241914, ... 40 4.6
15ref|XM_957507.1| Neurospora crassa OR74A hypothetical protein (N... 40 4.6
16ref|XM_327245.1| Neurospora crassa OR74A hypothetical protein (N... 40 4.6
17gb|AY122187.1| Drosophila melanogaster LD43341 full insert cDNA 40 4.6
18ref|NM_165852.1| Drosophila melanogaster MCPH1 CG8981-RA, transc... 40 4.6
19ref|NM_136867.1| Drosophila melanogaster MCPH1 CG8981-RB, transc... 40 4.6
20gb|AC007474.5|AC007474 Drosophila melanogaster, chromosome 2R, r... 40 4.6
21emb|BX682544.5| Zebrafish DNA sequence from clone CH211-189G6 in... 40 4.6
22gb|CP000004.1| Gluconobacter oxydans 621H plasmid pGOX1, complet... 40 4.6
23gb|AC005466.5|AC005466 Drosophila melanogaster, chromosome 2R, r... 40 4.6
24gb|AE003824.3| Drosophila melanogaster chromosome 2R, section 26... 40 4.6 
>dbj|AK069590.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023019I11, full
           insert sequence
          Length = 1482

 Score =  295 bits (149), Expect = 5e-77
 Identities = 289/335 (86%), Gaps = 3/335 (0%)
 Strand = Plus / Plus

                                                                       
Query: 15  aatcccgacgaggtcgtgctcggtcaggagatcaacggcgcgagggtggtcaccctcaac 74
           |||||||||||||| |||||||| ||||||| |  ||||||||||||||  | |||||||
Sbjct: 193 aatcccgacgaggtggtgctcgggcaggagaccggcggcgcgagggtggcgatcctcaac 252

                                                                       
Query: 75  cgcccgcgccagctcaacggcatcaacgacagagtggtatatctcctagcgcagctcttg 134
           || ||||||||||| |||| ||||  ||| |||||||| |||||||| || ||| |||||
Sbjct: 253 cggccgcgccagctgaacgtcatctccgatagagtggtgtatctcctcgcccagttcttg 312

                                                                       
Query: 135 gagaaatgggagaaagatgacgatgccaagctggtcatcttcaagggagcaggacgagca 194
           ||||  |||||||||||||| |||||||||||||||||||||||||| || ||||| |||
Sbjct: 313 gagagctgggagaaagatgaggatgccaagctggtcatcttcaagggggctggacgtgca 372

                                                                       
Query: 195 ttttctgctggcggggacctaaagatgttctacgaagggagatcatcagatgattcctgc 254
           ||||| ||||| ||||| |||||||||||||| ||||   ||  ||||||||| ||||| 
Sbjct: 373 ttttccgctggtggggatctaaagatgttctatgaag---gaaaatcagatgactcctgt 429

                                                                       
Query: 255 ctcgaggtcgtgtataggatgtactggctctgctatcacatccatacatacaagaaaacc 314
           |||||||| || || |||||||| ||||| ||||| || ||||| || || |||||||||
Sbjct: 430 ctcgaggttgtttacaggatgtattggctttgctaccatatccacacgtataagaaaacc 489

                                              
Query: 315 acggtggctcttgttaatggacttgtcatgggtgg 349
            ||||||||||||||||||||||||||||||||||
Sbjct: 490 gcggtggctcttgttaatggacttgtcatgggtgg 524
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>ref|NM_191252.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 411

 Score =  161 bits (81), Expect = 2e-36
 Identities = 144/165 (87%)
 Strand = Plus / Plus

                                                                       
Query: 15  aatcccgacgaggtcgtgctcggtcaggagatcaacggcgcgagggtggtcaccctcaac 74
           |||||||||||||| |||||||| ||||||| |  ||||||||||||||  | |||||||
Sbjct: 34  aatcccgacgaggtggtgctcgggcaggagaccggcggcgcgagggtggcgatcctcaac 93

                                                                       
Query: 75  cgcccgcgccagctcaacggcatcaacgacagagtggtatatctcctagcgcagctcttg 134
           || ||||||||||| |||| ||||  ||| |||||||| |||||||| || ||| |||||
Sbjct: 94  cggccgcgccagctgaacgtcatctccgatagagtggtgtatctcctcgcccagttcttg 153

                                                        
Query: 135 gagaaatgggagaaagatgacgatgccaagctggtcatcttcaag 179
           ||||  |||||||||||||| ||||||||||||||||||||||||
Sbjct: 154 gagagctgggagaaagatgaggatgccaagctggtcatcttcaag 198
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 85.7 bits (43), Expect = 9e-14
 Identities = 61/67 (91%)
 Strand = Plus / Minus

                                                                            
Query: 114      tatctcctagcgcagctcttggagaaatgggagaaagatgacgatgccaagctggtcatc 173
                |||||||| || ||| |||||||||  |||||||||||||| ||||||||||||||||||
Sbjct: 31549611 tatctcctcgcccagttcttggagagctgggagaaagatgaggatgccaagctggtcatc 31549552

                       
Query: 174      ttcaagg 180
                |||||||
Sbjct: 31549551 ttcaagg 31549545



 Score = 65.9 bits (33), Expect = 8e-08
 Identities = 33/33 (100%)
 Strand = Plus / Minus

                                                 
Query: 317      ggtggctcttgttaatggacttgtcatgggtgg 349
                |||||||||||||||||||||||||||||||||
Sbjct: 31548726 ggtggctcttgttaatggacttgtcatgggtgg 31548694



 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 74/88 (84%)
 Strand = Plus / Minus

                                                                            
Query: 25       aggtcgtgctcggtcaggagatcaacggcgcgagggtggtcaccctcaaccgcccgcgcc 84
                |||| |||||||| ||||||| |  ||||||||||||||  | ||||||||| |||||||
Sbjct: 31549797 aggtggtgctcgggcaggagaccggcggcgcgagggtggcgatcctcaaccggccgcgcc 31549738

                                            
Query: 85       agctcaacggcatcaacgacagagtggt 112
                |||| |||| ||||  ||| ||||||||
Sbjct: 31549737 agctgaacgtcatctccgatagagtggt 31549710



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 42/47 (89%)
 Strand = Plus / Minus

                                                               
Query: 186      ggacgagcattttctgctggcggggacctaaagatgttctacgaagg 232
                ||||| |||||||| ||||| ||||| |||||||||||||| |||||
Sbjct: 31549089 ggacgtgcattttccgctggtggggatctaaagatgttctatgaagg 31549043
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>dbj|AP003249.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0435B05
          Length = 150997

 Score = 85.7 bits (43), Expect = 9e-14
 Identities = 61/67 (91%)
 Strand = Plus / Minus

                                                                         
Query: 114   tatctcctagcgcagctcttggagaaatgggagaaagatgacgatgccaagctggtcatc 173
             |||||||| || ||| |||||||||  |||||||||||||| ||||||||||||||||||
Sbjct: 62634 tatctcctcgcccagttcttggagagctgggagaaagatgaggatgccaagctggtcatc 62575

                    
Query: 174   ttcaagg 180
             |||||||
Sbjct: 62574 ttcaagg 62568



 Score = 65.9 bits (33), Expect = 8e-08
 Identities = 33/33 (100%)
 Strand = Plus / Minus

                                              
Query: 317   ggtggctcttgttaatggacttgtcatgggtgg 349
             |||||||||||||||||||||||||||||||||
Sbjct: 61749 ggtggctcttgttaatggacttgtcatgggtgg 61717



 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 74/88 (84%)
 Strand = Plus / Minus

                                                                         
Query: 25    aggtcgtgctcggtcaggagatcaacggcgcgagggtggtcaccctcaaccgcccgcgcc 84
             |||| |||||||| ||||||| |  ||||||||||||||  | ||||||||| |||||||
Sbjct: 62820 aggtggtgctcgggcaggagaccggcggcgcgagggtggcgatcctcaaccggccgcgcc 62761

                                         
Query: 85    agctcaacggcatcaacgacagagtggt 112
             |||| |||| ||||  ||| ||||||||
Sbjct: 62760 agctgaacgtcatctccgatagagtggt 62733



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 42/47 (89%)
 Strand = Plus / Minus

                                                            
Query: 186   ggacgagcattttctgctggcggggacctaaagatgttctacgaagg 232
             ||||| |||||||| ||||| ||||| |||||||||||||| |||||
Sbjct: 62112 ggacgtgcattttccgctggtggggatctaaagatgttctatgaagg 62066
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>dbj|AP003237.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0046E05
          Length = 162776

 Score = 85.7 bits (43), Expect = 9e-14
 Identities = 61/67 (91%)
 Strand = Plus / Minus

                                                                          
Query: 114    tatctcctagcgcagctcttggagaaatgggagaaagatgacgatgccaagctggtcatc 173
              |||||||| || ||| |||||||||  |||||||||||||| ||||||||||||||||||
Sbjct: 143675 tatctcctcgcccagttcttggagagctgggagaaagatgaggatgccaagctggtcatc 143616

                     
Query: 174    ttcaagg 180
              |||||||
Sbjct: 143615 ttcaagg 143609



 Score = 65.9 bits (33), Expect = 8e-08
 Identities = 33/33 (100%)
 Strand = Plus / Minus

                                               
Query: 317    ggtggctcttgttaatggacttgtcatgggtgg 349
              |||||||||||||||||||||||||||||||||
Sbjct: 142790 ggtggctcttgttaatggacttgtcatgggtgg 142758



 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 74/88 (84%)
 Strand = Plus / Minus

                                                                          
Query: 25     aggtcgtgctcggtcaggagatcaacggcgcgagggtggtcaccctcaaccgcccgcgcc 84
              |||| |||||||| ||||||| |  ||||||||||||||  | ||||||||| |||||||
Sbjct: 143861 aggtggtgctcgggcaggagaccggcggcgcgagggtggcgatcctcaaccggccgcgcc 143802

                                          
Query: 85     agctcaacggcatcaacgacagagtggt 112
              |||| |||| ||||  ||| ||||||||
Sbjct: 143801 agctgaacgtcatctccgatagagtggt 143774



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 42/47 (89%)
 Strand = Plus / Minus

                                                             
Query: 186    ggacgagcattttctgctggcggggacctaaagatgttctacgaagg 232
              ||||| |||||||| ||||| ||||| |||||||||||||| |||||
Sbjct: 143153 ggacgtgcattttccgctggtggggatctaaagatgttctatgaagg 143107
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>ref|NM_100534.2| Arabidopsis thaliana 3-hydroxyisobutyryl-CoA hydrolase/ catalytic
           AT1G06550 mRNA, complete cds
          Length = 1344

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 74/90 (82%)
 Strand = Plus / Plus

                                                                       
Query: 246 gattcctgcctcgaggtcgtgtataggatgtactggctctgctatcacatccatacatac 305
           ||||| ||||| ||||| || ||  ||||||||||||| || ||||| ||||| ||||||
Sbjct: 253 gattcttgccttgaggttgtttaccggatgtactggctgtgttatcatatccacacatac 312

                                         
Query: 306 aagaaaaccacggtggctcttgttaatgga 335
           ||||| ||   |||| |||| |||||||||
Sbjct: 313 aagaagacgcaggtgtctctggttaatgga 342
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>dbj|AK221578.1| Arabidopsis thaliana mRNA for 3-hydroxyisobutyryl-coenzyme A
           hydrolase, complete cds, clone: RAFL07-83-C04
          Length = 1437

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 74/90 (82%)
 Strand = Plus / Plus

                                                                       
Query: 246 gattcctgcctcgaggtcgtgtataggatgtactggctctgctatcacatccatacatac 305
           ||||| ||||| ||||| || ||  ||||||||||||| || ||||| ||||| ||||||
Sbjct: 310 gattcttgccttgaggttgtttaccggatgtactggctgtgttatcatatccacacatac 369

                                         
Query: 306 aagaaaaccacggtggctcttgttaatgga 335
           ||||| ||   |||| |||| |||||||||
Sbjct: 370 aagaagacgcaggtgtctctggttaatgga 399
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>gb|BT022051.1| Arabidopsis thaliana At1g06550 gene, complete cds
          Length = 1343

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 74/90 (82%)
 Strand = Plus / Plus

                                                                       
Query: 246 gattcctgcctcgaggtcgtgtataggatgtactggctctgctatcacatccatacatac 305
           ||||| ||||| ||||| || ||  ||||||||||||| || ||||| ||||| ||||||
Sbjct: 268 gattcttgccttgaggttgtttaccggatgtactggctgtgttatcatatccacacatac 327

                                         
Query: 306 aagaaaaccacggtggctcttgttaatgga 335
           ||||| ||   |||| |||| |||||||||
Sbjct: 328 aagaagacgcaggtgtctctggttaatgga 357
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>gb|AC007592.4|AC007592 Genomic sequence for Arabidopsis thaliana BAC F12K11 from chromosome I,
             complete sequence
          Length = 93724

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 59/70 (84%)
 Strand = Plus / Plus

                                                                         
Query: 241   cagatgattcctgcctcgaggtcgtgtataggatgtactggctctgctatcacatccata 300
             |||| ||||| ||||| ||||| || ||  ||||||||||||| || ||||| ||||| |
Sbjct: 48047 cagaggattcttgccttgaggttgtttaccggatgtactggctgtgttatcatatccaca 48106

                       
Query: 301   catacaagaa 310
             ||||||||||
Sbjct: 48107 catacaagaa 48116
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>gb|AE001437.1| Clostridium acetobutylicum ATCC 824, complete genome
          Length = 3940880

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 319     tggctcttgttaatggacttgt 340
               ||||||||||||||||||||||
Sbjct: 1419726 tggctcttgttaatggacttgt 1419747
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>emb|AL805969.13| Mouse DNA sequence from clone RP23-40L1 on chromosome 4, complete
             sequence
          Length = 252953

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 137   gaaatgggagaaagatgacgat 158
             ||||||||||||||||||||||
Sbjct: 74756 gaaatgggagaaagatgacgat 74735
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>emb|CR753838.10| Zebrafish DNA sequence from clone DKEY-189H5 in linkage group 5, complete
              sequence
          Length = 188660

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 132    ttggagaaatgggagaaagat 152
              |||||||||||||||||||||
Sbjct: 155679 ttggagaaatgggagaaagat 155699
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>emb|CT797314.2| Pan troglodytes chromosome X clone CH251-171B18 map Xq28, complete
              sequence
          Length = 178731

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 285    tgctatcacatccatacatacaaga 309
              ||||||||||| |||||||||||||
Sbjct: 139129 tgctatcacatgcatacatacaaga 139153
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>gb|BC116469.1| Danio rerio cDNA clone MGC:136239 IMAGE:7241914, complete cds
          Length = 2350

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 29   cgtgctcggtcaggagatca 48
            ||||||||||||||||||||
Sbjct: 1016 cgtgctcggtcaggagatca 997
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>ref|XM_957507.1| Neurospora crassa OR74A hypothetical protein (NCU06960.1) partial
           mRNA
          Length = 1284

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                               
Query: 63  gtcaccctcaaccgcccgcgccagctcaacggcatc 98
           ||||| ||||||||||||  ||||||||||| ||||
Sbjct: 88  gtcacgctcaaccgcccggcccagctcaacgccatc 123
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>ref|XM_327245.1| Neurospora crassa OR74A hypothetical protein (NCU06960.1) partial
           mRNA
          Length = 1284

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                               
Query: 63  gtcaccctcaaccgcccgcgccagctcaacggcatc 98
           ||||| ||||||||||||  ||||||||||| ||||
Sbjct: 88  gtcacgctcaaccgcccggcccagctcaacgccatc 123
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>gb|AY122187.1| Drosophila melanogaster LD43341 full insert cDNA
          Length = 2873

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 316  cggtggctcttgttaatggacttg 339
            |||||||||||||| |||||||||
Sbjct: 2152 cggtggctcttgttcatggacttg 2129
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>ref|NM_165852.1| Drosophila melanogaster MCPH1 CG8981-RA, transcript variant A
            (MCPH1), mRNA
          Length = 3037

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 316  cggtggctcttgttaatggacttg 339
            |||||||||||||| |||||||||
Sbjct: 2353 cggtggctcttgttcatggacttg 2330
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>ref|NM_136867.1| Drosophila melanogaster MCPH1 CG8981-RB, transcript variant B
            (MCPH1), mRNA
          Length = 2836

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 316  cggtggctcttgttaatggacttg 339
            |||||||||||||| |||||||||
Sbjct: 2152 cggtggctcttgttcatggacttg 2129
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>gb|AC007474.5|AC007474 Drosophila melanogaster, chromosome 2R, region 49A-49B, BAC clone
             BACR14L19, complete sequence
          Length = 192763

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 316   cggtggctcttgttaatggacttg 339
             |||||||||||||| |||||||||
Sbjct: 15247 cggtggctcttgttcatggacttg 15270
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>emb|BX682544.5| Zebrafish DNA sequence from clone CH211-189G6 in linkage group 20,
             complete sequence
          Length = 163093

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 29    cgtgctcggtcaggagatca 48
             ||||||||||||||||||||
Sbjct: 30323 cgtgctcggtcaggagatca 30304
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>gb|CP000004.1| Gluconobacter oxydans 621H plasmid pGOX1, complete sequence
          Length = 163186

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 143   ggagaaagatgacgatgccaagct 166
             ||||||||||||||||||| ||||
Sbjct: 41178 ggagaaagatgacgatgccgagct 41155
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>gb|AC005466.5|AC005466 Drosophila melanogaster, chromosome 2R, region 48C2-48C5, P1 clone
             DS03299, complete sequence
          Length = 72986

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 316   cggtggctcttgttaatggacttg 339
             |||||||||||||| |||||||||
Sbjct: 41850 cggtggctcttgttcatggacttg 41873
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>gb|AE003824.3| Drosophila melanogaster chromosome 2R, section 26 of 73 of the complete
              sequence
          Length = 268836

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 316    cggtggctcttgttaatggacttg 339
              |||||||||||||| |||||||||
Sbjct: 170591 cggtggctcttgttcatggacttg 170614


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,131,920
Number of Sequences: 3902068
Number of extensions: 3131920
Number of successful extensions: 81496
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 81438
Number of HSP's gapped (non-prelim): 57
length of query: 349
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 327
effective length of database: 17,147,199,772
effective search space: 5607134325444
effective search space used: 5607134325444
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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