>XIP1_ORYSA (Q7GCM7) Xylanase inhibitor protein 1 precursor (Class III|
           chitinase homolog a) (RIXI protein)
          Length = 304

 Score = 97.4 bits (241), Expect = 8e-21
 Identities = 46/79 (58%), Positives = 56/79 (70%)
 Frame = +2

Query: 44  GRAASFLLLGAILCSATFLAVPAAATGKTGQVAVFWGRNKNEGSLREACDTGTYTIAIIS 223
           GR +  + L  +L  ++ LA PA A GKTGQ+ VFWGRNKNEG+L+E CDTG YT  +IS
Sbjct: 5   GRRSWLVPLAMVLAVSSCLAGPAMAAGKTGQMTVFWGRNKNEGTLKETCDTGLYTTVVIS 64

Query: 224 FLDVFGRGYYHLDLSGHDV 280
           F  VFG G Y  DLSGHD+
Sbjct: 65  FYSVFGHGRYWGDLSGHDL 83

>XIP1_WHEAT (Q8L5C6) Xylanase inhibitor protein 1 precursor (Class III|
           chitinase homolog) (XIP-I protein)
          Length = 304

 Score = 96.7 bits (239), Expect = 1e-20
 Identities = 53/86 (61%), Positives = 61/86 (70%), Gaps = 2/86 (2%)
 Frame = +2

Query: 29  MALVRGRAASFLLLGAILCSATFLAVPA-AATGKTGQVAVFWGRNKNEGSLREACDTGTY 205
           MA +  R  + LL    + +A FL   A AA GKTGQV VFWGRNK EGSLREACD+G Y
Sbjct: 1   MAPLAARRPACLLALLSVAAALFLTPTALAAGGKTGQVTVFWGRNKAEGSLREACDSGMY 60

Query: 206 TIAIISFLDVFG-RGYYHLDLSGHDV 280
           T+  +SFLDVFG  G YHLDLSGHD+
Sbjct: 61  TMVTMSFLDVFGANGKYHLDLSGHDL 86

>XIP2_ORYSA (Q53NL5) Xylanase inhibitor protein 2 precursor (Class III|
           chitinase homolog h)
          Length = 290

 Score = 80.1 bits (196), Expect = 1e-15
 Identities = 44/84 (52%), Positives = 52/84 (61%)
 Frame = +2

Query: 23  LTMALVRGRAASFLLLGAILCSATFLAVPAAATGKTGQVAVFWGRNKNEGSLREACDTGT 202
           L  AL+   AA+ LLL         LA P  AT     +AV+WGR+K EGSLREACDTG 
Sbjct: 3   LVHALLPFAAAAALLL---------LAAPPPATADDPGLAVYWGRHKEEGSLREACDTGR 53

Query: 203 YTIAIISFLDVFGRGYYHLDLSGH 274
           YT  II+F + FG G Y LD+SGH
Sbjct: 54  YTTVIITFYNAFGHGRYSLDISGH 77

>CHIT3_VITVI (P51614) Acidic endochitinase precursor (EC 3.2.1.14)|
          Length = 301

 Score = 54.7 bits (130), Expect = 6e-08
 Identities = 27/67 (40%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
 Frame = +2

Query: 77  ILCSATFLAVPAAATGKTGQVAVFWGRNKNEGSLREACDTGTYTIAIISFLDVFGRGYY- 253
           +L S + LA+    T   G +A++WG+N NEG+L + C+TG Y+   I+FL+ FG G   
Sbjct: 10  LLISLSVLAL--LQTSYAGGIAIYWGQNGNEGTLTQTCNTGKYSYVNIAFLNKFGNGQTP 67

Query: 254 HLDLSGH 274
            ++L+GH
Sbjct: 68  EINLAGH 74

>CHIA_PHAAN (P29024) Acidic endochitinase precursor (EC 3.2.1.14)|
          Length = 298

 Score = 53.5 bits (127), Expect = 1e-07
 Identities = 25/49 (51%), Positives = 34/49 (69%), Gaps = 1/49 (2%)
 Frame = +2

Query: 131 GQVAVFWGRNKNEGSLREACDTGTYTIAIISFLDVFGRGYY-HLDLSGH 274
           G ++V+WG+N NEGSL +AC+TG Y    I+FL  FG G    L+L+GH
Sbjct: 30  GGISVYWGQNGNEGSLADACNTGNYKYVNIAFLFTFGGGQTPQLNLAGH 78

>CHIA_CICAR (P36908) Acidic endochitinase precursor (EC 3.2.1.14)|
          Length = 293

 Score = 53.1 bits (126), Expect = 2e-07
 Identities = 23/47 (48%), Positives = 33/47 (70%), Gaps = 1/47 (2%)
 Frame = +2

Query: 137 VAVFWGRNKNEGSLREACDTGTYTIAIISFLDVFGRGYY-HLDLSGH 274
           +AV+WG+N NEGSL++AC+T  Y    I+FL  FG G    ++L+GH
Sbjct: 26  IAVYWGQNGNEGSLQDACNTNNYQFVNIAFLSTFGNGQNPQINLAGH 72

>CHIA_TOBAC (P29060) Acidic endochitinase precursor (EC 3.2.1.14)|
          Length = 291

 Score = 53.1 bits (126), Expect = 2e-07
 Identities = 32/74 (43%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
 Frame = +2

Query: 56  SFLLLGAILCSATFLAVPAAATGKTGQVAVFWGRNKNEGSLREACDTGTYTIAIISFLDV 235
           SFLL   +L    FL    A   + G + ++WG+N NEGSL + C T  Y I  I+FL V
Sbjct: 5   SFLLTALVL----FLR---ALKLEAGDIVIYWGQNGNEGSLADTCATNNYAIVNIAFLVV 57

Query: 236 FGRGYYH-LDLSGH 274
           FG G    L+L+GH
Sbjct: 58  FGNGQNPVLNLAGH 71

>CHLY_PARTH (P23473) Bifunctional chitinase/lysozyme [Includes: Chitinase (EC|
           3.2.1.14); Lysozyme (EC 3.2.1.17)] (Fragment)
          Length = 47

 Score = 50.1 bits (118), Expect = 1e-06
 Identities = 19/39 (48%), Positives = 29/39 (74%)
 Frame = +2

Query: 131 GQVAVFWGRNKNEGSLREACDTGTYTIAIISFLDVFGRG 247
           G +A++WG+N NEG+L + C+TG Y+   I+FL+ FG G
Sbjct: 1   GGIAIYWGQNGNEGTLTQTCNTGKYSYVNIAFLNKFGNG 39

>CHIA_CUCSA (P17541) Acidic endochitinase precursor (EC 3.2.1.14)|
          Length = 292

 Score = 50.1 bits (118), Expect = 1e-06
 Identities = 26/64 (40%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
 Frame = +2

Query: 86  SATFLAVPAAATGKTGQVAVFWGRNKNEGSLREACDTGTYTIAIISFLDVFGRGYYH-LD 262
           S  FL      +     +A++WG+N NEGSL   C TG Y    I+FL  FG G    L+
Sbjct: 11  SIFFLLSSIFRSSDAAGIAIYWGQNGNEGSLASTCATGNYEFVNIAFLSSFGSGQAPVLN 70

Query: 263 LSGH 274
           L+GH
Sbjct: 71  LAGH 74

>CHIE_BETVU (P36910) Acidic endochitinase SE2 precursor (EC 3.2.1.14)|
          Length = 293

 Score = 50.1 bits (118), Expect = 1e-06
 Identities = 26/77 (33%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
 Frame = +2

Query: 47  RAASFLLLGAILCSATFLAVPAAATGKTGQVAVFWGRNKNEGSLREACDTGTYTIAIISF 226
           +  S L L ++L  A+F       +    Q+ ++WG+N +EGSL + C++G Y   I++F
Sbjct: 4   KIVSVLFLISLLIFASF------ESSHGSQIVIYWGQNGDEGSLADTCNSGNYGTVILAF 57

Query: 227 LDVFGRGYY-HLDLSGH 274
           +  FG G    L+L+GH
Sbjct: 58  VATFGNGQTPALNLAGH 74

>CHIA_ARATH (P19172) Acidic endochitinase precursor (EC 3.2.1.14)|
          Length = 302

 Score = 49.7 bits (117), Expect = 2e-06
 Identities = 32/85 (37%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
 Frame = +2

Query: 23  LTMALVRGRAASFLLLGAILCSATFLAVPAAATGKTGQVAVFWGRNKNEGSLREACDTGT 202
           +T   +R     FL    I CS   L+ P+ A+   G +A++WG+N NEG+L   C TG 
Sbjct: 1   MTNMTLRKHVIYFLFF--ISCS---LSKPSDAS--RGGIAIYWGQNGNEGNLSATCATGR 53

Query: 203 YTIAIISFLDVFGRGYY-HLDLSGH 274
           Y    ++FL  FG G    L+L+GH
Sbjct: 54  YAYVNVAFLVKFGNGQTPELNLAGH 78

>CHLY_HEVBR (P23472) Hevamine-A precursor [Includes: Chitinase (EC 3.2.1.14);|
           Lysozyme (EC 3.2.1.17)]
          Length = 311

 Score = 49.3 bits (116), Expect = 3e-06
 Identities = 21/49 (42%), Positives = 33/49 (67%), Gaps = 1/49 (2%)
 Frame = +2

Query: 131 GQVAVFWGRNKNEGSLREACDTGTYTIAIISFLDVFGRGYY-HLDLSGH 274
           G +A++WG+N NEG+L + C T  Y+   I+FL+ FG G    ++L+GH
Sbjct: 27  GGIAIYWGQNGNEGTLTQTCSTRKYSYVNIAFLNKFGNGQTPQINLAGH 75

>CHIB_TOBAC (P29061) Basic endochitinase precursor (EC 3.2.1.14)|
          Length = 294

 Score = 45.4 bits (106), Expect = 4e-05
 Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
 Frame = +2

Query: 125 KTGQVAVFWGRNKNEGSLREACDTGTYTIAIISFLDVFGRGYY-HLDLSGH 274
           K G + V+WG++  EG L + C++G Y I  I+FL  FG      L+L+GH
Sbjct: 23  KAGDIVVYWGQDVGEGKLIDTCNSGLYNIVNIAFLSSFGNFQTPKLNLAGH 73

>CONB_CANEN (P49347) Concanavalin B precursor (Con B)|
          Length = 324

 Score = 44.3 bits (103), Expect = 8e-05
 Identities = 23/60 (38%), Positives = 35/60 (58%)
 Frame = +2

Query: 62  LLLGAILCSATFLAVPAAATGKTGQVAVFWGRNKNEGSLREACDTGTYTIAIISFLDVFG 241
           L+L  ++   +F  +  A    T ++AV+WG+ + +G LR+ C T  Y I  ISFLD FG
Sbjct: 8   LILMVVIWIMSFWTLSLADISST-EIAVYWGQ-REDGLLRDTCKTNNYKIVFISFLDKFG 65

>CHI1_RHINI (P29025) Chitinase 1 precursor (EC 3.2.1.14)|
          Length = 493

 Score = 34.3 bits (77), Expect = 0.085
 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
 Frame = +2

Query: 89  ATFLAVPAAATGKTG-QVAVFWGRNK-----NEGSLREACDTGTYTIAIISFLDVFGRG 247
           A F+    AA    G  V  +WG+N       +GSL   C +G   + I+SFL+ F  G
Sbjct: 12  AAFITSTLAAYSSNGVNVMYYWGQNSAGGSNTQGSLVSYCQSGQVDVIILSFLNKFNMG 70

>CHI1_RHIOL (P29026) Chitinase 1 precursor (EC 3.2.1.14)|
          Length = 540

 Score = 32.0 bits (71), Expect = 0.42
 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 8/61 (13%)
 Frame = +2

Query: 89  ATFLA---VPAAATGKTGQVAVFWGRNKNEGSLREA-----CDTGTYTIAIISFLDVFGR 244
           + FLA   V AA +     V  +WG+N   GS  +A     C++G     ++SFL VF  
Sbjct: 12  SAFLASTGVQAAWSSNGPNVMYYWGQNSAGGSNTQASLGTYCESGQVDAVLLSFLHVFNV 71

Query: 245 G 247
           G
Sbjct: 72  G 72

>CHI2_RHIOL (P29027) Chitinase 2 precursor (EC 3.2.1.14)|
          Length = 542

 Score = 31.6 bits (70), Expect = 0.55
 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 8/61 (13%)
 Frame = +2

Query: 89  ATFLA---VPAAATGKTGQVAVFWGRNKNEGSLREA-----CDTGTYTIAIISFLDVFGR 244
           + FLA   V AA +     V  +WG+N   GS  +A     C++G     ++SFL VF  
Sbjct: 12  SAFLASTGVQAAWSSHGPNVMYYWGQNSAGGSNTQASLGTYCESGQVDAVLLSFLHVFNV 71

Query: 245 G 247
           G
Sbjct: 72  G 72

>CHI2_CANAL (P40953) Chitinase 2 precursor (EC 3.2.1.14)|
          Length = 583

 Score = 31.6 bits (70), Expect = 0.55
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = +2

Query: 89  ATFLAVPAAATGKTGQVAVFWGRNKNEGS--LREACDTGTYTIAIISFLDVF 238
           A  +   +A    + QVA++WG+N   G   L + C      I ++SFL++F
Sbjct: 9   AAAVVASSALASASNQVALYWGQNGAGGQERLAQYCQETDVDIVLLSFLNLF 60

>HCN3_HUMAN (Q9P1Z3) Potassium/sodium hyperpolarization-activated cyclic|
           nucleotide-gated channel 3
          Length = 774

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 17/41 (41%), Positives = 22/41 (53%)
 Frame = +1

Query: 67  PRGYPLLRNLPCRPGRGHGEDRPGGRVLG*EQERGVPPRGL 189
           PRG PL  + P  P R  G+  PG +  G E+   +PP GL
Sbjct: 707 PRGRPLSASQPSLPQRATGDGSPGRKGSGSER---LPPSGL 744

>NFAC1_PIG (O77638) Nuclear factor of activated T-cells, cytoplasmic 1 (NFAT|
           transcription complex cytosolic component) (NF-ATc1)
           (NF-ATc) (NFATmac)
          Length = 822

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 19/44 (43%), Positives = 21/44 (47%), Gaps = 7/44 (15%)
 Frame = +1

Query: 43  RSGSLLPTPRGYPLLRNLPCRP------GRGH-GEDRPGGRVLG 153
           RS  + P P   P L +L C P      G GH G  RP G VLG
Sbjct: 744 RSAVMSPPPSASPKLHDLSCAPYSKGMAGPGHLGLQRPAGGVLG 787

>TILS_ERWCT (Q6D8C5) tRNA(Ile)-lysidine synthase (EC 6.3.4.-)|
           (tRNA(Ile)-lysidine synthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase)
          Length = 440

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
 Frame = -2

Query: 192 SQASRRDPSFL---FLPQNTATWPVFPVAAAGTARKVAEQ 82
           +Q  R D +FL    LP+ T  WP FP A A +A   AEQ
Sbjct: 188 NQDERFDRNFLRRQILPRLTQRWPHFPSAVARSAELCAEQ 227

>CH38_DROME (P07183) Chorion protein S38|
          Length = 306

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = -1

Query: 220 NDGYGVRASVAGLAEGPLVLVPTPEHGHLACLPRGRG 110
           N G    A++AG  EGP    P P H H +  P G G
Sbjct: 265 NQGLSALANIAGEREGP--YGPAPSHQHYSAGPAGHG 299

>LDH_DEIRA (P50933) L-lactate dehydrogenase (EC 1.1.1.27) (L-LDH)|
          Length = 304

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 8/45 (17%)
 Frame = -1

Query: 211 YGVRASVAGLAEGPL--------VLVPTPEHGHLACLPRGRGRDG 101
           YG+ A++A + E  L        V  PTPE+G    LPR  GR G
Sbjct: 227 YGIGAALARITEAVLRDRRAVLTVSAPTPEYGVSLSLPRVVGRQG 271

>CBPY_PICPA (P52710) Carboxypeptidase Y precursor (EC 3.4.16.5)|
           (Carboxypeptidase YSCY)
          Length = 523

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 16/64 (25%), Positives = 27/64 (42%)
 Frame = +2

Query: 89  ATFLAVPAAATGKTGQVAVFWGRNKNEGSLREACDTGTYTIAIISFLDVFGRGYYHLDLS 268
           + F   PAA      Q+  +    KN   +R+ CD G+     + F+D +    +  D  
Sbjct: 332 SAFTCAPAAIYCNNAQMGPYQRTGKNVYDIRKECDGGSLCYKDLEFIDTYLNQKFVQDAL 391

Query: 269 GHDV 280
           G +V
Sbjct: 392 GAEV 395

>SEPP1_RAT (P25236) Selenoprotein P precursor (SeP) [Contains: Selenoprotein|
           Se-P10; Selenoprotein Se-P6; Selenoprotein Se-P2;
           Selenoprotein Se-P1]
          Length = 385

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +1

Query: 163 ERGVPPRGLRHWHVHHSH 216
           E  +PP GL H H HH H
Sbjct: 235 ETSLPPSGLHHHHHHHKH 252

>IF2_NOCFA (Q5YSC6) Translation initiation factor IF-2|
          Length = 969

 Score = 28.9 bits (63), Expect = 3.6
 Identities = 22/62 (35%), Positives = 23/62 (37%), Gaps = 10/62 (16%)
 Frame = +1

Query: 31  GARTRSGSLLP----------TPRGYPLLRNLPCRPGRGHGEDRPGGRVLG*EQERGVPP 180
           G R   GS+ P          TPR  P     P RPG   G  RPGG   G     G P 
Sbjct: 242 GPRPSPGSMPPRPNPGAMPQRTPRPGPSAGGRPGRPGGAPGAGRPGGGGGGYRGGGGAPG 301

Query: 181 RG 186
            G
Sbjct: 302 AG 303

>LRP1_HUMAN (Q07954) Low-density lipoprotein receptor-related protein 1 precursor|
            (LRP) (Alpha-2-macroglobulin receptor) (A2MR)
            (Apolipoprotein E receptor) (APOER) (CD91 antigen)
          Length = 4544

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = -1

Query: 130  CLPRGRGRDGKEGCGAEDSPEE*EGGCPTAYERHC 26
            CL  GR  DG + CG  D  +E +   PTA+  HC
Sbjct: 3709 CLWIGRQCDGTDNCG--DGTDEEDCEPPTAHTTHC 3741

>ACA8_ARATH (Q9LF79) Calcium-transporting ATPase 8, plasma membrane-type (EC|
            3.6.3.8) (Ca(2+)-ATPase isoform 8)
          Length = 1074

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
 Frame = +2

Query: 95   FLAVPAAATGKTGQVAVFWGRNKN---EGSL 178
            F+ VPAA      +V  FWG+ KN   EGSL
Sbjct: 1044 FIPVPAAPISNKLKVLKFWGKKKNSSGEGSL 1074

>AGRN_DISOM (Q90404) Agrin (Fragment)|
          Length = 1328

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 26/73 (35%), Positives = 30/73 (41%), Gaps = 2/73 (2%)
 Frame = -2

Query: 234 TSRKEMMAMVYVPVSQASRRDPSFLFLPQNTATWP-VFPVAAA-GTARKVAEQRIAPRSR 61
           T+     A   VP++ AS   P     P  T  WP V P A    T  K A  R  P SR
Sbjct: 539 TTTSTTAARTTVPITTASAL-PVTRRPPPATTRWPKVLPHAKVPSTTTKPATTRRPPFSR 597

Query: 60  KEAARPRTSAIVR 22
           K   RP T  + R
Sbjct: 598 KVEVRPATVKVHR 610

>KDSA_PEA (O50044) 2-dehydro-3-deoxyphosphooctonate aldolase (EC 2.5.1.55)|
           (Phospho-2-dehydro-3-deoxyoctonate aldolase)
           (3-deoxy-D-manno-octulosonic acid 8-phosphate
           synthetase) (KDO-8-phosphate synthetase) (KDO 8-P
           synthase) (KDOPS)
          Length = 290

 Score = 28.1 bits (61), Expect = 6.1
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = +2

Query: 44  GRAASFLLLGAILCSATFLAVPAAATGK 127
           GR A  + + A LC  T L V AA TGK
Sbjct: 104 GRVADIIQIPAFLCRQTDLLVAAAKTGK 131

>PRB3_HUMAN (Q04118) Basic salivary proline-rich protein 3 precursor (Parotid|
           salivary glycoprotein G1) (Proline-rich protein G1)
          Length = 309

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +1

Query: 61  PTPRGYPLLRNLPCRPGRGHGEDRPGGRVLG*EQERGVPPR 183
           P P+G    +  P RPG+  G+   GG      Q +G PPR
Sbjct: 60  PPPQGGNQSQGPPPRPGKPEGQPPQGG-----NQSQGPPPR 95

>DOCK9_HUMAN (Q9BZ29) Dedicator of cytokinesis protein 9 (Cdc42 guanine nucleotide|
            exchange factor zizimin 1)
          Length = 2069

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -1

Query: 157  PTPEHGHLACLPRGRGRDGKEGCGA 83
            P   H H ACL R RG   ++GC A
Sbjct: 1660 PLLPHSHSACLRRSRGGVFRQGCTA 1684

>NAH2_ZYGRO (O42701) Na(+)/H(+) antiporter 2|
          Length = 808

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +2

Query: 23  LTMALVRGRAASFLLLGAILCSATFLAVPAAATGKT 130
           +T  +V G + + ++LG  L + T +A+P   T  T
Sbjct: 422 MTSVIVHGSSVAVIMLGRYLSTVTLMALPTGRTTNT 457


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,803,001
Number of Sequences: 219361
Number of extensions: 748444
Number of successful extensions: 3422
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 3054
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3365
length of database: 80,573,946
effective HSP length: 68
effective length of database: 65,657,398
effective search space used: 1575777552
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)