ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bart52b09 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AB204556.1| Triticum aestivum Xip-III gene for xylanase inhibitor XIP-III, complete cds Length = 934 Score = 109 bits (55), Expect = 5e-21 Identities = 135/161 (83%), Gaps = 3/161 (1%) Strand = Plus / Plus Query: 120 cggggaagacaggccaggtggccgtgttctggggtaggaacaagaacgaggggtccctcc 179 |||||||||| ||||||||| | ||||||||||| |||||||| |||||||||||| | Sbjct: 109 cggggaagaccggccaggtgacggtgttctggggccggaacaaggccgaggggtccctgc 168 Query: 180 gcgaggcctgcgacactggcacgtacaccatagccatcatttccttcctcgacgtcttcg 239 |||||||||||||| | |||| ||||||||| | || ||| || |||||||||||||| | Sbjct: 169 gcgaggcctgcgactccggcatgtacaccatggtcaccatgtctttcctcgacgtctttg 228 Query: 240 gccgc---ggctactaccacctcgacctgtccggccacgac 277 || | || | |||||||||||||| |||||||||||| Sbjct: 229 gcgccaaaggaaagtaccacctcgacctctccggccacgac 269
>gb|AC134045.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0022E16 map C481S, complete sequence Length = 179668 Score = 101 bits (51), Expect = 1e-18 Identities = 117/139 (84%) Strand = Plus / Plus Query: 142 cgtgttctggggtaggaacaagaacgaggggtccctccgcgaggcctgcgacactggcac 201 |||||||||||| |||||||| ||||||| || ||||| |||||||||||||| ||| Sbjct: 60783 cgtgttctggggccggaacaaggacgagggctctctccgtgaggcctgcgacaccggcct 60842 Query: 202 gtacaccatagccatcatttccttcctcgacgtcttcggccgcggctactaccacctcga 261 |||||| | |||||| |||||||||| ||||||||||| |||| |||| |||||| Sbjct: 60843 ctacacctccgtcatcatctccttcctcgccgtcttcggccacggccgctactccctcga 60902 Query: 262 cctgtccggccacgacgtc 280 ||| ||||||||||||||| Sbjct: 60903 cctctccggccacgacgtc 60921 Score = 69.9 bits (35), Expect = 4e-09 Identities = 89/107 (83%) Strand = Plus / Minus Query: 141 ccgtgttctggggtaggaacaagaacgaggggtccctccgcgaggcctgcgacactggca 200 |||| |||||||| |||||||| ||||||| || ||||| |||||||||||||| |||| Sbjct: 84412 ccgtcttctggggccggaacaaggacgagggctctctccgggaggcctgcgacaccggca 84353 Query: 201 cgtacaccatagccatcatttccttcctcgacgtcttcggccgcggc 247 |||| || | |||||| ||||||||| ||||||||||| |||| Sbjct: 84352 tctacaacaccgtcatcatctccttcctcaccgtcttcggccacggc 84306 Score = 65.9 bits (33), Expect = 6e-08 Identities = 93/113 (82%) Strand = Plus / Plus Query: 165 acgaggggtccctccgcgaggcctgcgacactggcacgtacaccatagccatcatttcct 224 ||||||| ||||||| |||||||||||||| ||| |||| || | |||||| |||| Sbjct: 63631 acgagggcaccctccgtgaggcctgcgacaccggccactacaacaccgtcatcatctcct 63690 Query: 225 tcctcgacgtcttcggccgcggctactaccacctcgacctgtccggccacgac 277 ||||| ||||||||||| |||| |||| ||||||||| |||||||||||| Sbjct: 63691 tcctcagcgtcttcggccacggccgctactccctcgacctctccggccacgac 63743 Score = 48.1 bits (24), Expect = 0.015 Identities = 54/64 (84%) Strand = Plus / Minus Query: 214 catcatttccttcctcgacgtcttcggccgcggctactaccacctcgacctgtccggcca 273 |||||| ||||||||| ||||||||||| |||| | ||| |||||||| |||||||| Sbjct: 51296 catcatctccttcctcagcgtcttcggccacggcaaatactggctcgacctctccggcca 51237 Query: 274 cgac 277 |||| Sbjct: 51236 cgac 51233 Score = 40.1 bits (20), Expect = 3.7 Identities = 53/64 (82%) Strand = Plus / Minus Query: 214 catcatttccttcctcgacgtcttcggccgcggctactaccacctcgacctgtccggcca 273 |||||| ||||||||| ||||||||||| ||| | ||| |||||||| |||||||| Sbjct: 55998 catcatctccttcctcagcgtcttcggccatggcaagtactggctcgacctctccggcca 55939 Query: 274 cgac 277 |||| Sbjct: 55938 cgac 55935
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 101 bits (51), Expect = 1e-18 Identities = 117/139 (84%) Strand = Plus / Plus Query: 142 cgtgttctggggtaggaacaagaacgaggggtccctccgcgaggcctgcgacactggcac 201 |||||||||||| |||||||| ||||||| || ||||| |||||||||||||| ||| Sbjct: 28101516 cgtgttctggggccggaacaaggacgagggctctctccgtgaggcctgcgacaccggcct 28101575 Query: 202 gtacaccatagccatcatttccttcctcgacgtcttcggccgcggctactaccacctcga 261 |||||| | |||||| |||||||||| ||||||||||| |||| |||| |||||| Sbjct: 28101576 ctacacctccgtcatcatctccttcctcgccgtcttcggccacggccgctactccctcga 28101635 Query: 262 cctgtccggccacgacgtc 280 ||| ||||||||||||||| Sbjct: 28101636 cctctccggccacgacgtc 28101654 Score = 69.9 bits (35), Expect = 4e-09 Identities = 89/107 (83%) Strand = Plus / Minus Query: 141 ccgtgttctggggtaggaacaagaacgaggggtccctccgcgaggcctgcgacactggca 200 |||| |||||||| |||||||| ||||||| || ||||| |||||||||||||| |||| Sbjct: 28125857 ccgtcttctggggccggaacaaggacgagggctctctccgggaggcctgcgacaccggca 28125798 Query: 201 cgtacaccatagccatcatttccttcctcgacgtcttcggccgcggc 247 |||| || | |||||| ||||||||| ||||||||||| |||| Sbjct: 28125797 tctacaacaccgtcatcatctccttcctcaccgtcttcggccacggc 28125751 Score = 65.9 bits (33), Expect = 6e-08 Identities = 93/113 (82%) Strand = Plus / Plus Query: 165 acgaggggtccctccgcgaggcctgcgacactggcacgtacaccatagccatcatttcct 224 ||||||| ||||||| |||||||||||||| ||| |||| || | |||||| |||| Sbjct: 28105076 acgagggcaccctccgtgaggcctgcgacaccggccactacaacaccgtcatcatctcct 28105135 Query: 225 tcctcgacgtcttcggccgcggctactaccacctcgacctgtccggccacgac 277 ||||| ||||||||||| |||| |||| ||||||||| |||||||||||| Sbjct: 28105136 tcctcagcgtcttcggccacggccgctactccctcgacctctccggccacgac 28105188 Score = 60.0 bits (30), Expect = 4e-06 Identities = 92/113 (81%) Strand = Plus / Plus Query: 165 acgaggggtccctccgcgaggcctgcgacactggcacgtacaccatagccatcatttcct 224 ||||||| ||||||| |||||||||||||| ||| |||| || | |||||| |||| Sbjct: 28104364 acgagggcaccctccgtgaggcctgcgacaccggccactacaacaccgtcatcatctcct 28104423 Query: 225 tcctcgacgtcttcggccgcggctactaccacctcgacctgtccggccacgac 277 ||||| ||||||||||| |||| |||| ||||||||| ||||| |||||| Sbjct: 28104424 tcctcagcgtcttcggccacggccgctactccctcgacctctccggncacgac 28104476 Score = 48.1 bits (24), Expect = 0.015 Identities = 54/64 (84%) Strand = Plus / Minus Query: 214 catcatttccttcctcgacgtcttcggccgcggctactaccacctcgacctgtccggcca 273 |||||| ||||||||| ||||||||||| |||| | ||| |||||||| |||||||| Sbjct: 28092029 catcatctccttcctcagcgtcttcggccacggcaaatactggctcgacctctccggcca 28091970 Query: 274 cgac 277 |||| Sbjct: 28091969 cgac 28091966 Score = 40.1 bits (20), Expect = 3.7 Identities = 53/64 (82%) Strand = Plus / Minus Query: 214 catcatttccttcctcgacgtcttcggccgcggctactaccacctcgacctgtccggcca 273 |||||| ||||||||| ||||||||||| ||| | ||| |||||||| |||||||| Sbjct: 28096731 catcatctccttcctcagcgtcttcggccatggcaagtactggctcgacctctccggcca 28096672 Query: 274 cgac 277 |||| Sbjct: 28096671 cgac 28096668
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 101 bits (51), Expect = 1e-18 Identities = 141/171 (82%) Strand = Plus / Minus Query: 94 cttccttgccgtcccggccgcggccacggggaagacaggccaggtggccgtgttctgggg 153 |||||| |||| ||||||| ||||| ||||||||| ||||||||| |||| |||||||| Sbjct: 14490784 cttcctcgccggcccggccacggccgtggggaagaccggccaggtgaccgtcttctgggg 14490725 Query: 154 taggaacaagaacgaggggtccctccgcgaggcctgcgacactggcacgtacaccatagc 213 |||||||| ||||||| |||||||||||||||||||| | || |||||||| | Sbjct: 14490724 ccggaacaaggacgagggcaccctccgcgaggcctgcgactccgggctctacaccatggt 14490665 Query: 214 catcatttccttcctcgacgtcttcggccgcggctactaccacctcgacct 264 |||||| ||||||||| |||| | ||| | |||| | ||| |||||||||| Sbjct: 14490664 catcatgtccttcctcaacgtgtacggacacggcaagtacaacctcgacct 14490614
>dbj|AP004732.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0021M10 Length = 163416 Score = 101 bits (51), Expect = 1e-18 Identities = 141/171 (82%) Strand = Plus / Minus Query: 94 cttccttgccgtcccggccgcggccacggggaagacaggccaggtggccgtgttctgggg 153 |||||| |||| ||||||| ||||| ||||||||| ||||||||| |||| |||||||| Sbjct: 83958 cttcctcgccggcccggccacggccgtggggaagaccggccaggtgaccgtcttctgggg 83899 Query: 154 taggaacaagaacgaggggtccctccgcgaggcctgcgacactggcacgtacaccatagc 213 |||||||| ||||||| |||||||||||||||||||| | || |||||||| | Sbjct: 83898 ccggaacaaggacgagggcaccctccgcgaggcctgcgactccgggctctacaccatggt 83839 Query: 214 catcatttccttcctcgacgtcttcggccgcggctactaccacctcgacct 264 |||||| ||||||||| |||| | ||| | |||| | ||| |||||||||| Sbjct: 83838 catcatgtccttcctcaacgtgtacggacacggcaagtacaacctcgacct 83788
>dbj|AK073800.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033067D20, full insert sequence Length = 1106 Score = 101 bits (51), Expect = 1e-18 Identities = 117/139 (84%) Strand = Plus / Plus Query: 142 cgtgttctggggtaggaacaagaacgaggggtccctccgcgaggcctgcgacactggcac 201 |||||||||||| |||||||| ||||||| || ||||| |||||||||||||| ||| Sbjct: 192 cgtgttctggggccggaacaaggacgagggctctctccgtgaggcctgcgacaccggcct 251 Query: 202 gtacaccatagccatcatttccttcctcgacgtcttcggccgcggctactaccacctcga 261 |||||| | |||||| |||||||||| ||||||||||| |||| |||| |||||| Sbjct: 252 ctacacctccgtcatcatctccttcctcgccgtcttcggccacggccgctactccctcga 311 Query: 262 cctgtccggccacgacgtc 280 ||| ||||||||||||||| Sbjct: 312 cctctccggccacgacgtc 330
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 101 bits (51), Expect = 1e-18 Identities = 117/139 (84%) Strand = Plus / Plus Query: 142 cgtgttctggggtaggaacaagaacgaggggtccctccgcgaggcctgcgacactggcac 201 |||||||||||| |||||||| ||||||| || ||||| |||||||||||||| ||| Sbjct: 28086394 cgtgttctggggccggaacaaggacgagggctctctccgtgaggcctgcgacaccggcct 28086453 Query: 202 gtacaccatagccatcatttccttcctcgacgtcttcggccgcggctactaccacctcga 261 |||||| | |||||| |||||||||| ||||||||||| |||| |||| |||||| Sbjct: 28086454 ctacacctccgtcatcatctccttcctcgccgtcttcggccacggccgctactccctcga 28086513 Query: 262 cctgtccggccacgacgtc 280 ||| ||||||||||||||| Sbjct: 28086514 cctctccggccacgacgtc 28086532 Score = 69.9 bits (35), Expect = 4e-09 Identities = 89/107 (83%) Strand = Plus / Minus Query: 141 ccgtgttctggggtaggaacaagaacgaggggtccctccgcgaggcctgcgacactggca 200 |||| |||||||| |||||||| ||||||| || ||||| |||||||||||||| |||| Sbjct: 28110735 ccgtcttctggggccggaacaaggacgagggctctctccgggaggcctgcgacaccggca 28110676 Query: 201 cgtacaccatagccatcatttccttcctcgacgtcttcggccgcggc 247 |||| || | |||||| ||||||||| ||||||||||| |||| Sbjct: 28110675 tctacaacaccgtcatcatctccttcctcaccgtcttcggccacggc 28110629 Score = 65.9 bits (33), Expect = 6e-08 Identities = 93/113 (82%) Strand = Plus / Plus Query: 165 acgaggggtccctccgcgaggcctgcgacactggcacgtacaccatagccatcatttcct 224 ||||||| ||||||| |||||||||||||| ||| |||| || | |||||| |||| Sbjct: 28089954 acgagggcaccctccgtgaggcctgcgacaccggccactacaacaccgtcatcatctcct 28090013 Query: 225 tcctcgacgtcttcggccgcggctactaccacctcgacctgtccggccacgac 277 ||||| ||||||||||| |||| |||| ||||||||| |||||||||||| Sbjct: 28090014 tcctcagcgtcttcggccacggccgctactccctcgacctctccggccacgac 28090066 Score = 61.9 bits (31), Expect = 1e-06 Identities = 92/113 (81%) Strand = Plus / Plus Query: 165 acgaggggtccctccgcgaggcctgcgacactggcacgtacaccatagccatcatttcct 224 ||||||| ||||||| |||||||||||||| ||| |||| || | |||||| |||| Sbjct: 28089242 acgagggcaccctccgtgaggcctgcgacaccggccactacaacaccgtcatcatctcct 28089301 Query: 225 tcctcgacgtcttcggccgcggctactaccacctcgacctgtccggccacgac 277 ||||| ||||||||||| |||| |||| ||||||||| ||||| |||||| Sbjct: 28089302 tcctcagcgtcttcggccacggccgctactccctcgacctctccggscacgac 28089354 Score = 48.1 bits (24), Expect = 0.015 Identities = 54/64 (84%) Strand = Plus / Minus Query: 214 catcatttccttcctcgacgtcttcggccgcggctactaccacctcgacctgtccggcca 273 |||||| ||||||||| ||||||||||| |||| | ||| |||||||| |||||||| Sbjct: 28076907 catcatctccttcctcagcgtcttcggccacggcaaatactggctcgacctctccggcca 28076848 Query: 274 cgac 277 |||| Sbjct: 28076847 cgac 28076844 Score = 40.1 bits (20), Expect = 3.7 Identities = 53/64 (82%) Strand = Plus / Minus Query: 214 catcatttccttcctcgacgtcttcggccgcggctactaccacctcgacctgtccggcca 273 |||||| ||||||||| ||||||||||| ||| | ||| |||||||| |||||||| Sbjct: 28081609 catcatctccttcctcagcgtcttcggccatggcaagtactggctcgacctctccggcca 28081550 Query: 274 cgac 277 |||| Sbjct: 28081549 cgac 28081546
>dbj|D55708.1| Oryza sativa (japonica cultivar-group) mRNA for chitinase, complete cds Length = 1049 Score = 101 bits (51), Expect = 1e-18 Identities = 117/139 (84%) Strand = Plus / Plus Query: 142 cgtgttctggggtaggaacaagaacgaggggtccctccgcgaggcctgcgacactggcac 201 |||||||||||| |||||||| ||||||| || ||||| |||||||||||||| ||| Sbjct: 134 cgtgttctggggccggaacaaggacgagggctctctccgtgaggcctgcgacaccggcct 193 Query: 202 gtacaccatagccatcatttccttcctcgacgtcttcggccgcggctactaccacctcga 261 |||||| | |||||| |||||||||| ||||||||||| |||| |||| |||||| Sbjct: 194 ctacacctccgtcatcatctccttcctcgccgtcttcggccacggccgctactccctcga 253 Query: 262 cctgtccggccacgacgtc 280 ||| ||||||||||||||| Sbjct: 254 cctctccggccacgacgtc 272
>emb|AJ422119.1|TAE422119 Triticum aestivum mRNA for xylanase inhibitor protein I (xipI gene) Length = 915 Score = 83.8 bits (42), Expect = 3e-13 Identities = 125/152 (82%), Gaps = 3/152 (1%) Strand = Plus / Plus Query: 125 aagacaggccaggtggccgtgttctggggtaggaacaagaacgaggggtccctccgcgag 184 ||||| ||||||||| | ||||||||||| |||||||| |||||| ||||| || ||| Sbjct: 100 aagaccggccaggtgacggtgttctggggacggaacaaggccgagggctccctgcgtgag 159 Query: 185 gcctgcgacactggcacgtacaccatagccatcatttccttcctcgacgtcttcgg---c 241 ||||||||| | || | ||||||||| | || ||| ||||| |||||||||||||| | Sbjct: 160 gcctgcgactccggtatgtacaccatggtcaccatgtccttgctcgacgtcttcggcgcc 219 Query: 242 cgcggctactaccacctcgacctgtccggcca 273 |||| | |||||||||||||| |||||||| Sbjct: 220 aacggcaagtaccacctcgacctctccggcca 251
>ref|NM_193094.1| Oryza sativa (japonica cultivar-group), mRNA Length = 951 Score = 79.8 bits (40), Expect = 4e-12 Identities = 91/108 (84%) Strand = Plus / Plus Query: 134 caggtggccgtgttctggggtaggaacaagaacgaggggtccctccgcgaggcctgcgac 193 |||||| | ||||||||||| |||||||| |||||||||| ||||| ||||| |||||| Sbjct: 115 caggtgacggtgttctggggccggaacaaggacgaggggtctctccgggaggcgtgcgac 174 Query: 194 actggcacgtacaccatagccatcatttccttcctcgacgtcttcggc 241 || ||| ||||||||| | | |||| ||||||||| |||||| |||| Sbjct: 175 accggcttgtacaccatggtcgtcatgtccttcctcaacgtctacggc 222
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 79.8 bits (40), Expect = 4e-12 Identities = 91/108 (84%) Strand = Plus / Plus Query: 134 caggtggccgtgttctggggtaggaacaagaacgaggggtccctccgcgaggcctgcgac 193 |||||| | ||||||||||| |||||||| |||||||||| ||||| ||||| |||||| Sbjct: 26161676 caggtgacggtgttctggggccggaacaaggacgaggggtctctccgggaggcgtgcgac 26161735 Query: 194 actggcacgtacaccatagccatcatttccttcctcgacgtcttcggc 241 || ||| ||||||||| | | |||| ||||||||| |||||| |||| Sbjct: 26161736 accggcttgtacaccatggtcgtcatgtccttcctcaacgtctacggc 26161783
>dbj|AK111717.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023022A01, full insert sequence Length = 1165 Score = 79.8 bits (40), Expect = 4e-12 Identities = 91/108 (84%) Strand = Plus / Plus Query: 134 caggtggccgtgttctggggtaggaacaagaacgaggggtccctccgcgaggcctgcgac 193 |||||| | ||||||||||| |||||||| |||||||||| ||||| ||||| |||||| Sbjct: 163 caggtgacggtgttctggggccggaacaaggacgaggggtctctccgggaggcgtgcgac 222 Query: 194 actggcacgtacaccatagccatcatttccttcctcgacgtcttcggc 241 || ||| ||||||||| | | |||| ||||||||| |||||| |||| Sbjct: 223 accggcttgtacaccatggtcgtcatgtccttcctcaacgtctacggc 270
>dbj|AP004339.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0519E12 Length = 152448 Score = 79.8 bits (40), Expect = 4e-12 Identities = 91/108 (84%) Strand = Plus / Plus Query: 134 caggtggccgtgttctggggtaggaacaagaacgaggggtccctccgcgaggcctgcgac 193 |||||| | ||||||||||| |||||||| |||||||||| ||||| ||||| |||||| Sbjct: 53534 caggtgacggtgttctggggccggaacaaggacgaggggtctctccgggaggcgtgcgac 53593 Query: 194 actggcacgtacaccatagccatcatttccttcctcgacgtcttcggc 241 || ||| ||||||||| | | |||| ||||||||| |||||| |||| Sbjct: 53594 accggcttgtacaccatggtcgtcatgtccttcctcaacgtctacggc 53641
>gb|AC104270.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1037_G10, complete sequence Length = 181130 Score = 71.9 bits (36), Expect = 1e-09 Identities = 108/132 (81%) Strand = Plus / Plus Query: 143 gtgttctggggtaggaacaagaacgaggggtccctccgcgaggcctgcgacactggcacg 202 ||||||||||| |||||||| |||||| |||||||| |||||||||||||| ||| Sbjct: 59973 gtgttctggggccggaacaaggccgagggctccctccgtgaggcctgcgacaccggcctc 60032 Query: 203 tacaccatagccatcatttccttcctcgacgtcttcggccgcggctactaccacctcgac 262 |||| || | |||||| ||||||||| || |||||||||||| |||| | |||||| Sbjct: 60033 tacaacaccgtcatcatctccttcctcagcgcgttcggccgcggcagctacaagctcgac 60092 Query: 263 ctgtccggccac 274 || ||||||||| Sbjct: 60093 ctctccggccac 60104 Score = 52.0 bits (26), Expect = 0.001 Identities = 62/74 (83%) Strand = Plus / Plus Query: 156 ggaacaagaacgaggggtccctccgcgaggcctgcgacactggcacgtacaccatagcca 215 |||||||| ||||||| |||||| | ||||||||||| || ||| ||||||| | || Sbjct: 93527 ggaacaaggacgagggctccctcagggaggcctgcgataccggcctctacaccaccgtca 93586 Query: 216 tcatttccttcctc 229 |||||||||||||| Sbjct: 93587 tcatttccttcctc 93600 Score = 48.1 bits (24), Expect = 0.015 Identities = 54/64 (84%) Strand = Plus / Minus Query: 166 cgaggggtccctccgcgaggcctgcgacactggcacgtacaccatagccatcatttcctt 225 ||||||||||||||| ||||| |||||||| ||| ||||||| | |||||| ||||| Sbjct: 15167 cgaggggtccctccgtgaggcgtgcgacaccggcctctacaccaccgtcatcatctcctt 15108 Query: 226 cctc 229 |||| Sbjct: 15107 cctc 15104 Score = 46.1 bits (23), Expect = 0.059 Identities = 41/47 (87%) Strand = Plus / Plus Query: 147 tctggggtaggaacaagaacgaggggtccctccgcgaggcctgcgac 193 ||||||| |||||||| ||||||| |||||| | |||||||||||| Sbjct: 71134 tctggggccggaacaaggacgagggctccctcagggaggcctgcgac 71180
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 71.9 bits (36), Expect = 1e-09 Identities = 108/132 (81%) Strand = Plus / Plus Query: 143 gtgttctggggtaggaacaagaacgaggggtccctccgcgaggcctgcgacactggcacg 202 ||||||||||| |||||||| |||||| |||||||| |||||||||||||| ||| Sbjct: 8848048 gtgttctggggccggaacaaggccgagggctccctccgtgaggcctgcgacaccggcctc 8848107 Query: 203 tacaccatagccatcatttccttcctcgacgtcttcggccgcggctactaccacctcgac 262 |||| || | |||||| ||||||||| || |||||||||||| |||| | |||||| Sbjct: 8848108 tacaacaccgtcatcatctccttcctcagcgcgttcggccgcggcagctacaagctcgac 8848167 Query: 263 ctgtccggccac 274 || ||||||||| Sbjct: 8848168 ctctccggccac 8848179 Score = 52.0 bits (26), Expect = 0.001 Identities = 62/74 (83%) Strand = Plus / Plus Query: 156 ggaacaagaacgaggggtccctccgcgaggcctgcgacactggcacgtacaccatagcca 215 |||||||| ||||||| |||||| | ||||||||||| || ||| ||||||| | || Sbjct: 8881602 ggaacaaggacgagggctccctcagggaggcctgcgataccggcctctacaccaccgtca 8881661 Query: 216 tcatttccttcctc 229 |||||||||||||| Sbjct: 8881662 tcatttccttcctc 8881675 Score = 48.1 bits (24), Expect = 0.015 Identities = 54/64 (84%) Strand = Plus / Minus Query: 166 cgaggggtccctccgcgaggcctgcgacactggcacgtacaccatagccatcatttcctt 225 ||||||||||||||| ||||| |||||||| ||| ||||||| | |||||| ||||| Sbjct: 8803242 cgaggggtccctccgtgaggcgtgcgacaccggcctctacaccaccgtcatcatctcctt 8803183 Query: 226 cctc 229 |||| Sbjct: 8803182 cctc 8803179 Score = 46.1 bits (23), Expect = 0.059 Identities = 41/47 (87%) Strand = Plus / Plus Query: 147 tctggggtaggaacaagaacgaggggtccctccgcgaggcctgcgac 193 ||||||| |||||||| ||||||| |||||| | |||||||||||| Sbjct: 8859209 tctggggccggaacaaggacgagggctccctcagggaggcctgcgac 8859255
>dbj|AK106678.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-114-A12, full insert sequence Length = 938 Score = 69.9 bits (35), Expect = 4e-09 Identities = 89/107 (83%) Strand = Plus / Minus Query: 141 ccgtgttctggggtaggaacaagaacgaggggtccctccgcgaggcctgcgacactggca 200 |||| |||||||| |||||||| ||||||| || ||||| |||||||||||||| |||| Sbjct: 746 ccgtcttctggggccggaacaaggacgagggctctctccgggaggcctgcgacaccggca 687 Query: 201 cgtacaccatagccatcatttccttcctcgacgtcttcggccgcggc 247 |||| || | |||||| ||||||||| ||||||||||| |||| Sbjct: 686 tctacaacaccgtcatcatctccttcctcaccgtcttcggccacggc 640
>dbj|AK064281.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-105-G04, full insert sequence Length = 1161 Score = 69.9 bits (35), Expect = 4e-09 Identities = 89/107 (83%) Strand = Plus / Plus Query: 141 ccgtgttctggggtaggaacaagaacgaggggtccctccgcgaggcctgcgacactggca 200 |||| |||||||| |||||||| ||||||| || ||||| |||||||||||||| |||| Sbjct: 191 ccgtcttctggggccggaacaaggacgagggctctctccgggaggcctgcgacaccggca 250 Query: 201 cgtacaccatagccatcatttccttcctcgacgtcttcggccgcggc 247 |||| || | |||||| ||||||||| ||||||||||| |||| Sbjct: 251 tctacaacaccgtcatcatctccttcctcaccgtcttcggccacggc 297
>dbj|AK106319.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-101-E05, full insert sequence Length = 1076 Score = 65.9 bits (33), Expect = 6e-08 Identities = 93/113 (82%) Strand = Plus / Plus Query: 165 acgaggggtccctccgcgaggcctgcgacactggcacgtacaccatagccatcatttcct 224 ||||||| ||||||| |||||||||||||| ||| |||| || | |||||| |||| Sbjct: 198 acgagggcaccctccgtgaggcctgcgacaccggccactacaacaccgtcatcatctcct 257 Query: 225 tcctcgacgtcttcggccgcggctactaccacctcgacctgtccggccacgac 277 ||||| ||||||||||| |||| |||| ||||||||| |||||||||||| Sbjct: 258 tcctcagcgtcttcggccacggccgctactccctcgacctctccggccacgac 310
>dbj|D55710.1| Oryza sativa (japonica cultivar-group) mRNA for chitinase, complete cds Length = 1145 Score = 65.9 bits (33), Expect = 6e-08 Identities = 93/113 (82%) Strand = Plus / Plus Query: 165 acgaggggtccctccgcgaggcctgcgacactggcacgtacaccatagccatcatttcct 224 ||||||| ||||||| |||||||||||||| ||| |||| || | |||||| |||| Sbjct: 176 acgagggcaccctccgtgaggcctgcgacaccggccactacaacaccgtcatcatctcct 235 Query: 225 tcctcgacgtcttcggccgcggctactaccacctcgacctgtccggccacgac 277 ||||| ||||||||||| |||| |||| ||||||||| |||||||||||| Sbjct: 236 tcctcagcgtcttcggccacggccgctactccctcgacctctccggccacgac 288
>gb|AC119290.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0037H06, complete sequence Length = 144457 Score = 48.1 bits (24), Expect = 0.015 Identities = 54/64 (84%) Strand = Plus / Minus Query: 166 cgaggggtccctccgcgaggcctgcgacactggcacgtacaccatagccatcatttcctt 225 ||||||||||||||| ||||| |||||||| ||| ||||||| | |||||| ||||| Sbjct: 135684 cgaggggtccctccgtgaggcgtgcgacaccggcctctacaccaccgtcatcatctcctt 135625 Query: 226 cctc 229 |||| Sbjct: 135624 cctc 135621
>dbj|AK122053.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033114G24, full insert sequence Length = 2161 Score = 48.1 bits (24), Expect = 0.015 Identities = 54/64 (84%) Strand = Plus / Plus Query: 214 catcatttccttcctcgacgtcttcggccgcggctactaccacctcgacctgtccggcca 273 |||||| ||||||||| ||||||||||| |||| | ||| |||||||| |||||||| Sbjct: 1096 catcatctccttcctcagcgtcttcggccacggcaaatactggctcgacctctccggcca 1155 Query: 274 cgac 277 |||| Sbjct: 1156 cgac 1159
>dbj|AK073757.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033068O15, full insert sequence Length = 1281 Score = 48.1 bits (24), Expect = 0.015 Identities = 54/64 (84%) Strand = Plus / Plus Query: 214 catcatttccttcctcgacgtcttcggccgcggctactaccacctcgacctgtccggcca 273 |||||| ||||||||| ||||||||||| |||| | ||| |||||||| |||||||| Sbjct: 216 catcatctccttcctcagcgtcttcggccacggcaaatactggctcgacctctccggcca 275 Query: 274 cgac 277 |||| Sbjct: 276 cgac 279
>dbj|AK067962.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013123G23, full insert sequence Length = 1308 Score = 48.1 bits (24), Expect = 0.015 Identities = 54/64 (84%) Strand = Plus / Plus Query: 214 catcatttccttcctcgacgtcttcggccgcggctactaccacctcgacctgtccggcca 273 |||||| ||||||||| ||||||||||| |||| | ||| |||||||| |||||||| Sbjct: 216 catcatctccttcctcagcgtcttcggccacggcaaatactggctcgacctctccggcca 275 Query: 274 cgac 277 |||| Sbjct: 276 cgac 279
>dbj|AK065866.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013045O11, full insert sequence Length = 1198 Score = 48.1 bits (24), Expect = 0.015 Identities = 54/64 (84%) Strand = Plus / Plus Query: 166 cgaggggtccctccgcgaggcctgcgacactggcacgtacaccatagccatcatttcctt 225 ||||||||||||||| ||||| |||||||| ||| ||||||| | |||||| ||||| Sbjct: 184 cgaggggtccctccgtgaggcgtgcgacaccggcctctacaccaccgtcatcatctcctt 243 Query: 226 cctc 229 |||| Sbjct: 244 cctc 247
>dbj|AK062114.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-045-C02, full insert sequence Length = 1199 Score = 48.1 bits (24), Expect = 0.015 Identities = 54/64 (84%) Strand = Plus / Plus Query: 166 cgaggggtccctccgcgaggcctgcgacactggcacgtacaccatagccatcatttcctt 225 ||||||||||||||| ||||| |||||||| ||| ||||||| | |||||| ||||| Sbjct: 183 cgaggggtccctccgtgaggcgtgcgacaccggcctctacaccaccgtcatcatctcctt 242 Query: 226 cctc 229 |||| Sbjct: 243 cctc 246
>dbj|D55714.1| Oryza sativa (japonica cultivar-group) mRNA for chitinase, complete cds Length = 1167 Score = 48.1 bits (24), Expect = 0.015 Identities = 54/64 (84%) Strand = Plus / Plus Query: 214 catcatttccttcctcgacgtcttcggccgcggctactaccacctcgacctgtccggcca 273 |||||| ||||||||| ||||||||||| |||| | ||| |||||||| |||||||| Sbjct: 196 catcatctccttcctcagcgtcttcggccacggcaaatactggctcgacctctccggcca 255 Query: 274 cgac 277 |||| Sbjct: 256 cgac 259
>dbj|AB027423.1| Oryza sativa mRNA for class III chitinase homologue (OsChib3H-b), partial cds, clone:C62532 Length = 989 Score = 48.1 bits (24), Expect = 0.015 Identities = 54/64 (84%) Strand = Plus / Plus Query: 214 catcatttccttcctcgacgtcttcggccgcggctactaccacctcgacctgtccggcca 273 |||||| ||||||||| ||||||||||| |||| | ||| |||||||| |||||||| Sbjct: 178 catcatctccttcctcagcgtcttcggccacggcaaatactggctcgacctctccggcca 237 Query: 274 cgac 277 |||| Sbjct: 238 cgac 241
>dbj|AB027422.1| Oryza sativa mRNA for class III chitinase homologue (OsChib3H-b), complete cds, clone:C62515 Length = 996 Score = 48.1 bits (24), Expect = 0.015 Identities = 54/64 (84%) Strand = Plus / Plus Query: 214 catcatttccttcctcgacgtcttcggccgcggctactaccacctcgacctgtccggcca 273 |||||| ||||||||| ||||||||||| |||| | ||| |||||||| |||||||| Sbjct: 182 catcatctccttcctcagcgtcttcggccacggcaaatactggctcgacctctccggcca 241 Query: 274 cgac 277 |||| Sbjct: 242 cgac 245
>dbj|AB027421.1| Oryza sativa mRNA for class III chitinase homologue (OsChib3H-b), complete cds, clone:C60416 Length = 1416 Score = 48.1 bits (24), Expect = 0.015 Identities = 54/64 (84%) Strand = Plus / Plus Query: 214 catcatttccttcctcgacgtcttcggccgcggctactaccacctcgacctgtccggcca 273 |||||| ||||||||| ||||||||||| |||| | ||| |||||||| |||||||| Sbjct: 192 catcatctccttcctcagcgtcttcggccacggcaaatactggctcgacctctccggcca 251 Query: 274 cgac 277 |||| Sbjct: 252 cgac 255
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 46.1 bits (23), Expect = 0.059 Identities = 47/55 (85%) Strand = Plus / Minus Query: 141 ccgtgttctggggtaggaacaagaacgaggggtccctccgcgaggcctgcgacac 195 |||| |||||||| | |||||||||||||| |||| |||||| |||||||||| Sbjct: 25772019 ccgtcttctggggacgcaacaagaacgagggcacccttcgcgagacctgcgacac 25771965
>dbj|AP004622.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0689E12 Length = 147516 Score = 46.1 bits (23), Expect = 0.059 Identities = 47/55 (85%) Strand = Plus / Minus Query: 141 ccgtgttctggggtaggaacaagaacgaggggtccctccgcgaggcctgcgacac 195 |||| |||||||| | |||||||||||||| |||| |||||| |||||||||| Sbjct: 44230 ccgtcttctggggacgcaacaagaacgagggcacccttcgcgagacctgcgacac 44176
>dbj|AK073843.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033068H05, full insert sequence Length = 1152 Score = 46.1 bits (23), Expect = 0.059 Identities = 41/47 (87%) Strand = Plus / Plus Query: 147 tctggggtaggaacaagaacgaggggtccctccgcgaggcctgcgac 193 ||||||| |||||||| ||||||| |||||| | |||||||||||| Sbjct: 160 tctggggccggaacaaggacgagggctccctcagggaggcctgcgac 206
>ref|XM_550226.1| Oryza sativa (japonica cultivar-group), mRNA Length = 759 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 175 cctccgcgaggcctgcgaca 194 |||||||||||||||||||| Sbjct: 133 cctccgcgaggcctgcgaca 152
>ref|XM_549854.1| Oryza sativa (japonica cultivar-group), mRNA Length = 711 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 175 cctccgcgaggcctgcgaca 194 |||||||||||||||||||| Sbjct: 139 cctccgcgaggcctgcgaca 158
>ref|NM_170175.1| Drosophila melanogaster CG31105-PA (CG31105) mRNA, complete cds Length = 1629 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 222 ccttcctcgacgtcttcggc 241 |||||||||||||||||||| Sbjct: 527 ccttcctcgacgtcttcggc 546
>dbj|AP007159.1| Aspergillus oryzae RIB40 genomic DNA, SC026 Length = 2324132 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 223 cttcctcgacgtcttcggcc 242 |||||||||||||||||||| Sbjct: 1974712 cttcctcgacgtcttcggcc 1974731
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 175 cctccgcgaggcctgcgaca 194 |||||||||||||||||||| Sbjct: 24592100 cctccgcgaggcctgcgaca 24592119
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 175 cctccgcgaggcctgcgaca 194 |||||||||||||||||||| Sbjct: 3196087 cctccgcgaggcctgcgaca 3196068 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 175 cctccgcgaggcctgcgaca 194 |||||||||||||||||||| Sbjct: 403264 cctccgcgaggcctgcgaca 403245
>gb|AC008205.7|AC008205 Drosophila melanogaster, chromosome 3R, region 96A-96B, BAC clone BACR33F18, complete sequence Length = 215711 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 222 ccttcctcgacgtcttcggc 241 |||||||||||||||||||| Sbjct: 145304 ccttcctcgacgtcttcggc 145285
>dbj|AP003209.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1189A09 Length = 167761 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 175 cctccgcgaggcctgcgaca 194 |||||||||||||||||||| Sbjct: 13716 cctccgcgaggcctgcgaca 13697
>dbj|AP002521.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0041E11 Length = 146335 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 175 cctccgcgaggcctgcgaca 194 |||||||||||||||||||| Sbjct: 139875 cctccgcgaggcctgcgaca 139856
>dbj|AP002863.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0005A05 Length = 190834 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 175 cctccgcgaggcctgcgaca 194 |||||||||||||||||||| Sbjct: 155102 cctccgcgaggcctgcgaca 155083
>dbj|AP002845.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0482C06 Length = 182779 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 175 cctccgcgaggcctgcgaca 194 |||||||||||||||||||| Sbjct: 43465 cctccgcgaggcctgcgaca 43446
>dbj|AK103295.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033125A18, full insert sequence Length = 1317 Score = 40.1 bits (20), Expect = 3.7 Identities = 53/64 (82%) Strand = Plus / Plus Query: 214 catcatttccttcctcgacgtcttcggccgcggctactaccacctcgacctgtccggcca 273 |||||| ||||||||| ||||||||||| ||| | ||| |||||||| |||||||| Sbjct: 275 catcatctccttcctcagcgtcttcggccatggcaagtactggctcgacctctccggcca 334 Query: 274 cgac 277 |||| Sbjct: 335 cgac 338
>gb|AE003749.3| Drosophila melanogaster chromosome 3R, section 87 of 118 of the complete sequence Length = 228433 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 222 ccttcctcgacgtcttcggc 241 |||||||||||||||||||| Sbjct: 148874 ccttcctcgacgtcttcggc 148855
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 175 cctccgcgaggcctgcgaca 194 |||||||||||||||||||| Sbjct: 24520306 cctccgcgaggcctgcgaca 24520325
>emb|AL954852.5|CNS08CD6 Oryza sativa chromosome 12, . BAC OJ1573_A06 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 143895 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 175 cctccgcgaggcctgcgaca 194 |||||||||||||||||||| Sbjct: 36966 cctccgcgaggcctgcgaca 36985
>emb|CT573044.1| Pig DNA sequence from clone XX-BE156J14 on chromosome 14, complete sequence Length = 184551 Score = 40.1 bits (20), Expect = 3.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 51 cagcctccttcctactcctc 70 |||||||||||||||||||| Sbjct: 28263 cagcctccttcctactcctc 28244
>dbj|AB027424.1| Oryza sativa mRNA for class III chitinase homologue (OsChib3H-c), complete cds, clone:C12024 Length = 1148 Score = 40.1 bits (20), Expect = 3.7 Identities = 53/64 (82%) Strand = Plus / Plus Query: 214 catcatttccttcctcgacgtcttcggccgcggctactaccacctcgacctgtccggcca 273 |||||| ||||||||| ||||||||||| ||| | ||| |||||||| |||||||| Sbjct: 227 catcatctccttcctcagcgtcttcggccatggcaagtactggctcgacctctccggcca 286 Query: 274 cgac 277 |||| Sbjct: 287 cgac 290 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,767,231 Number of Sequences: 3902068 Number of extensions: 1767231 Number of successful extensions: 34475 Number of sequences better than 10.0: 49 Number of HSP's better than 10.0 without gapping: 47 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 34174 Number of HSP's gapped (non-prelim): 284 length of query: 280 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 258 effective length of database: 17,147,199,772 effective search space: 4423977541176 effective search space used: 4423977541176 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
