ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart52b05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1VE2_HPV36 (P50809) Regulatory protein E2 33 0.41
2PI2R_BOVIN (P79393) Prostacyclin receptor (Prostanoid IP recepto... 30 3.5

>VE2_HPV36 (P50809) Regulatory protein E2|
          Length = 509

 Score = 32.7 bits (73), Expect = 0.41
 Identities = 30/105 (28%), Positives = 45/105 (42%), Gaps = 1/105 (0%)
 Frame = -2

Query: 432 DPASKHAAATRKVSHEKRKSMRAQAREPPGLSPRPQQKHRLASMTTTCAAVRRRS-APTP 256
           D  +K    + +    + K  R   R P   + RPQ K R +      +  R RS + + 
Sbjct: 227 DSTTKQLTTSEQPQQTETKG-RKYGRRPSSRTRRPQAKQRRSRSRHRSSRSRSRSQSRSH 285

Query: 255 *PVATSES*TQ*SYSLARSGVTVALLRRCSAATARPKAMRLRSRA 121
            P   S +    S SLA++GV     R  S +T+R    R RSR+
Sbjct: 286 TPTTRSATTRSRSPSLAKTGVQRVSTRSRSRSTSRRGGRRRRSRS 330



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>PI2R_BOVIN (P79393) Prostacyclin receptor (Prostanoid IP receptor) (PGI|
           receptor) (Prostaglandin I2 receptor)
          Length = 385

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 19/42 (45%), Positives = 22/42 (52%)
 Frame = +2

Query: 311 SRCFCCGRGLKPGGSRACALMLFLFSWLTFLVAAACLLAGSV 436
           S CF   R  +PGG   CA +L   S +  LVAA  L  GSV
Sbjct: 168 SWCFIRMRSAEPGG---CAFLLAYASLVALLVAAIVLCNGSV 206


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,991,869
Number of Sequences: 219361
Number of extensions: 530249
Number of successful extensions: 2218
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2214
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2618960580
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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