No.
Definition
Score (bits)
E Value
1 dbj|AK106358.1| Oryza sativa (japonica cultivar-group) cDNA clon...
337
2e-89
2 gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
180
2e-42
3 gb|AC134233.3| Oryza sativa (japonica cultivar-group) chromosome...
180
2e-42
4 dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D...
180
2e-42
5 dbj|AK103088.1| Oryza sativa (japonica cultivar-group) cDNA clon...
167
4e-38
6 dbj|AK106420.1| Oryza sativa (japonica cultivar-group) cDNA clon...
56
1e-04
7 gb|AE004755.1| Pseudomonas aeruginosa PAO1, section 316 of 529 o...
48
0.023
8 ref|XM_515380.1| PREDICTED: Pan troglodytes LOC459125 (LOC459125...
44
0.37
9 emb|AL731628.4|OSJN00282 Oryza sativa genomic DNA, chromosome 4,...
44
0.37
10 ref|NM_001029883.1| Homo sapiens similar to cDNA sequence BC0270...
44
0.37
11 gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
44
0.37
12 dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D...
44
0.37
13 gb|AC105398.3| Homo sapiens BAC clone RP11-656O12 from 2, comple...
44
0.37
14 gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
44
0.37
15 emb|BX572600.1| Rhodopseudomonas palustris CGA009 complete genom...
42
1.4
16 emb|BX572597.1| Rhodopseudomonas palustris CGA009 complete genom...
42
1.4
17 gb|AC105081.4| Homo sapiens chromosome 8, clone CTC-788C1, compl...
42
1.4
18 dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ...
42
1.4
19 dbj|AP003351.2| Homo sapiens genomic DNA, chromosome 8q23, clone...
42
1.4
20 ref|XM_476770.1| Oryza sativa (japonica cultivar-group), mRNA
40
5.7
21 gb|AC149084.5| Mus musculus BAC clone RP23-173A12 from chromosom...
40
5.7
22 gb|AC145549.3| Mus musculus BAC clone RP23-21M23 from chromosome...
40
5.7
23 gb|AC132957.3| Mus musculus BAC clone RP23-149E9 from chromosome...
40
5.7
24 emb|Z92967.1|CEF14D1 Caenorhabditis elegans Cosmid F14D1, comple...
40
5.7
25 emb|CR855994.1| Wallaby DNA sequence from clone MEKBa-69G12, com...
40
5.7
26 gb|AY286456.1| Mycobacterium gadium strain ATCC 27726 RecA (recA...
40
5.7
27 gb|DQ397556.1| Cenarchaeum symbiosum clone C13A10, complete sequ...
40
5.7
28 gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
40
5.7
29 gb|AE012435.1| Xanthomonas campestris pv. campestris str. ATCC 3...
40
5.7
30 gb|CP000133.1| Rhizobium etli CFN 42, complete genome
40
5.7
31 dbj|AP007154.1| Aspergillus oryzae RIB40 genomic DNA, SC001
40
5.7
32 dbj|AB207867.1| Escherichia coli transposon Tn2610, complete seq...
40
5.7
33 gb|AF261825.2| Salmonella enterica subsp. enterica serovar Typhi...
40
5.7
34 gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, ...
40
5.7
35 gb|AF386507.1|AF386507 Streptomyces lavendulae complestatin bios...
40
5.7
36 gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
40
5.7
37 gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete g...
40
5.7
38 dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D...
40
5.7
39 dbj|AP006878.1| Thermococcus kodakarensis KOD1 DNA, complete genome
40
5.7
40 gb|AC073218.6| Homo sapiens BAC clone RP11-529E15 from 2, comple...
40
5.7
41 dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co...
40
5.7
42 gb|AF240624.1|AF240624 Homo sapiens clone 11qtel_2072draft_c seq...
40
5.7
43 dbj|AP004670.4| Oryza sativa (japonica cultivar-group) genomic D...
40
5.7
44 dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
40
5.7
45 dbj|AB103506.1| Serratia marcescens tnpR, blaTEM, rmtB, orfA gen...
40
5.7
46 emb|CT025832.1| Acinetobacter baumannii str. AYE. Genomics of Mu...
40
5.7
47 gb|AF071555.1|AF071555 Salmonella typhimurium DT104 antibiotic r...
40
5.7
48 emb|X14716.1|ACNIFA2 Azorhizobium caulinodans nifA gene for nitr...
40
5.7
49 emb|X08014.1|ACNIFA Azorhizobium caulinodans nifA gene
40
5.7
50 dbj|AP003039.3| Homo sapiens genomic DNA, chromosome 11 clone:RP...
40
5.7
51 gb|AC170878.4| Mus musculus BAC clone RP24-226F17 from chromosom...
40
5.7
52 emb|AL663091.13| Mouse DNA sequence from clone RP23-392P11 on ch...
40
5.7
>gb|DP000009.1 | Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 180 bits (91), Expect = 2e-42
Identities = 136/151 (90%)
Strand = Plus / Plus
Query: 155 caggaaaggggttcggagcgtggtgctggagtcgtcggcgacgctgcgggcgtcggggta 214
|||||||||||| ||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct: 2946684 caggaaaggggtgaggagcctggtgctggagtcgtcggcgacgctgcgggcgtccgggtt 2946743
Query: 215 cgcgttcaacacatggaccaacgccttccgcgcgctcgatgccctcggcgttggggacaa 274
|||||||| |||||||| |||||||||||||||||||| ||||| || || || |||||
Sbjct: 2946744 cgcgttcacgacatggacgaacgccttccgcgcgctcgacgcccttggtgtcggcgacaa 2946803
Query: 275 gatcagggagcaccacctgctctacgagagg 305
|||||||||||| || |||||||||||||||
Sbjct: 2946804 gatcagggagcatcatctgctctacgagagg 2946834
Score = 121 bits (61), Expect = 2e-24
Identities = 97/109 (88%)
Strand = Plus / Plus
Query: 169 ggagcgtggtgctggagtcgtcggcgacgctgcgggcgtcggggtacgcgttcaacacat 228
||||||||||||||||||||||| ||||||||||| |||| |||| ||||||| |||||
Sbjct: 2943674 ggagcgtggtgctggagtcgtcgccgacgctgcggacgtccgggttggcgttcatcacat 2943733
Query: 229 ggaccaacgccttccgcgcgctcgatgccctcggcgttggggacaagat 277
|||| ||||||||||||||||| |||||||| || || || ||||||||
Sbjct: 2943734 ggacgaacgccttccgcgcgcttgatgcccttggggtaggcgacaagat 2943782
Score = 67.9 bits (34), Expect = 3e-08
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 89 gggcgtcgaggagatcgtcatcgccggcgccgggctcgccggactcgccacggccctggg 148
||||||||||| |||||||||||||||||||| ||||| || ||||| ||||| || ||
Sbjct: 2946505 gggcgtcgagggcatcgtcatcgccggcgccggcctcgcggggctcgcgacggcgctcgg 2946564
Query: 149 gttgcacagg 158
||| ||||||
Sbjct: 2946565 gttacacagg 2946574
Score = 61.9 bits (31), Expect = 2e-06
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 303 aggctggtggccttctctgcatccacaggcgaggctgccgcggaagtgagcctaaagatg 362
|||||| ||||||||||||||||||| || ||| |||||||| | |||| |||||||||
Sbjct: 2947307 aggctgttggccttctctgcatccacgggagagcctgccgcgaagttgagtctaaagatg 2947366
Query: 363 cagggcaaaag 373
|| || |||||
Sbjct: 2947367 caagggaaaag 2947377
Score = 61.9 bits (31), Expect = 2e-06
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 98 ggagatcgtcatcgccggcgccgggctcgccggactcgc 136
|||||||||||||||||||||||| |||||||| |||||
Sbjct: 2943520 ggagatcgtcatcgccggcgccggcctcgccgggctcgc 2943558
Score = 56.0 bits (28), Expect = 1e-04
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 387 attcgttgcgtgaagcgcaacttcctgctggagacgctgg 426
||||| |||||||||||||||||||| |||||||| ||||
Sbjct: 2947510 attcggtgcgtgaagcgcaacttcctactggagactctgg 2947549
Score = 52.0 bits (26), Expect = 0.002
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 303 aggctggtggccttctctgcatccac 328
||||||||||||||||||||||||||
Sbjct: 2975690 aggctggtggccttctctgcatccac 2975715
Score = 44.1 bits (22), Expect = 0.37
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 176 ggtgctggagtcgtcggcgacgctgcgggcgtcggggt 213
|||||||||||||||| || ||| |||||||||||||
Sbjct: 2940419 ggtgctggagtcgtcgccggagctccgggcgtcggggt 2940456
Score = 44.1 bits (22), Expect = 0.37
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 176 ggtgctggagtcgtcggcgacgctgcgggcgtcggggt 213
|||||||||||||||| || ||| |||||||||||||
Sbjct: 2916789 ggtgctggagtcgtcgccggagctccgggcgtcggggt 2916826
Score = 42.1 bits (21), Expect = 1.4
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 394 gcgtgaagcgcaacttcctgctggagacgctgg 426
||||||||||||||||||| | ||||||||||
Sbjct: 2976098 gcgtgaagcgcaacttcctacgagagacgctgg 2976130
>gb|AC134233.3 | Oryza sativa (japonica cultivar-group) chromosome 3 clone
OSJNBa0016I15, complete sequence
Length = 166282
Score = 180 bits (91), Expect = 2e-42
Identities = 136/151 (90%)
Strand = Plus / Plus
Query: 155 caggaaaggggttcggagcgtggtgctggagtcgtcggcgacgctgcgggcgtcggggta 214
|||||||||||| ||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct: 84171 caggaaaggggtgaggagcctggtgctggagtcgtcggcgacgctgcgggcgtccgggtt 84230
Query: 215 cgcgttcaacacatggaccaacgccttccgcgcgctcgatgccctcggcgttggggacaa 274
|||||||| |||||||| |||||||||||||||||||| ||||| || || || |||||
Sbjct: 84231 cgcgttcacgacatggacgaacgccttccgcgcgctcgacgcccttggtgtcggcgacaa 84290
Query: 275 gatcagggagcaccacctgctctacgagagg 305
|||||||||||| || |||||||||||||||
Sbjct: 84291 gatcagggagcatcatctgctctacgagagg 84321
Score = 121 bits (61), Expect = 2e-24
Identities = 97/109 (88%)
Strand = Plus / Plus
Query: 169 ggagcgtggtgctggagtcgtcggcgacgctgcgggcgtcggggtacgcgttcaacacat 228
||||||||||||||||||||||| ||||||||||| |||| |||| ||||||| |||||
Sbjct: 81161 ggagcgtggtgctggagtcgtcgccgacgctgcggacgtccgggttggcgttcatcacat 81220
Query: 229 ggaccaacgccttccgcgcgctcgatgccctcggcgttggggacaagat 277
|||| ||||||||||||||||| |||||||| || || || ||||||||
Sbjct: 81221 ggacgaacgccttccgcgcgcttgatgcccttggggtaggcgacaagat 81269
Score = 67.9 bits (34), Expect = 3e-08
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 89 gggcgtcgaggagatcgtcatcgccggcgccgggctcgccggactcgccacggccctggg 148
||||||||||| |||||||||||||||||||| ||||| || ||||| ||||| || ||
Sbjct: 83992 gggcgtcgagggcatcgtcatcgccggcgccggcctcgcggggctcgcgacggcgctcgg 84051
Query: 149 gttgcacagg 158
||| ||||||
Sbjct: 84052 gttacacagg 84061
Score = 61.9 bits (31), Expect = 2e-06
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 303 aggctggtggccttctctgcatccacaggcgaggctgccgcggaagtgagcctaaagatg 362
|||||| ||||||||||||||||||| || ||| |||||||| | |||| |||||||||
Sbjct: 84794 aggctgttggccttctctgcatccacgggagagcctgccgcgaagttgagtctaaagatg 84853
Query: 363 cagggcaaaag 373
|| || |||||
Sbjct: 84854 caagggaaaag 84864
Score = 61.9 bits (31), Expect = 2e-06
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 98 ggagatcgtcatcgccggcgccgggctcgccggactcgc 136
|||||||||||||||||||||||| |||||||| |||||
Sbjct: 81007 ggagatcgtcatcgccggcgccggcctcgccgggctcgc 81045
Score = 56.0 bits (28), Expect = 1e-04
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 387 attcgttgcgtgaagcgcaacttcctgctggagacgctgg 426
||||| |||||||||||||||||||| |||||||| ||||
Sbjct: 84997 attcggtgcgtgaagcgcaacttcctactggagactctgg 85036
Score = 52.0 bits (26), Expect = 0.002
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 303 aggctggtggccttctctgcatccac 328
||||||||||||||||||||||||||
Sbjct: 113177 aggctggtggccttctctgcatccac 113202
Score = 44.1 bits (22), Expect = 0.37
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 176 ggtgctggagtcgtcggcgacgctgcgggcgtcggggt 213
|||||||||||||||| || ||| |||||||||||||
Sbjct: 77906 ggtgctggagtcgtcgccggagctccgggcgtcggggt 77943
Score = 44.1 bits (22), Expect = 0.37
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 176 ggtgctggagtcgtcggcgacgctgcgggcgtcggggt 213
|||||||||||||||| || ||| |||||||||||||
Sbjct: 54276 ggtgctggagtcgtcgccggagctccgggcgtcggggt 54313
Score = 42.1 bits (21), Expect = 1.4
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 394 gcgtgaagcgcaacttcctgctggagacgctgg 426
||||||||||||||||||| | ||||||||||
Sbjct: 113585 gcgtgaagcgcaacttcctacgagagacgctgg 113617
>dbj|AP008209.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 180 bits (91), Expect = 2e-42
Identities = 136/151 (90%)
Strand = Plus / Plus
Query: 155 caggaaaggggttcggagcgtggtgctggagtcgtcggcgacgctgcgggcgtcggggta 214
|||||||||||| ||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct: 2946795 caggaaaggggtgaggagcctggtgctggagtcgtcggcgacgctgcgggcgtccgggtt 2946854
Query: 215 cgcgttcaacacatggaccaacgccttccgcgcgctcgatgccctcggcgttggggacaa 274
|||||||| |||||||| |||||||||||||||||||| ||||| || || || |||||
Sbjct: 2946855 cgcgttcacgacatggacgaacgccttccgcgcgctcgacgcccttggtgtcggcgacaa 2946914
Query: 275 gatcagggagcaccacctgctctacgagagg 305
|||||||||||| || |||||||||||||||
Sbjct: 2946915 gatcagggagcatcatctgctctacgagagg 2946945
Score = 121 bits (61), Expect = 2e-24
Identities = 97/109 (88%)
Strand = Plus / Plus
Query: 169 ggagcgtggtgctggagtcgtcggcgacgctgcgggcgtcggggtacgcgttcaacacat 228
||||||||||||||||||||||| ||||||||||| |||| |||| ||||||| |||||
Sbjct: 2943785 ggagcgtggtgctggagtcgtcgccgacgctgcggacgtccgggttggcgttcatcacat 2943844
Query: 229 ggaccaacgccttccgcgcgctcgatgccctcggcgttggggacaagat 277
|||| ||||||||||||||||| |||||||| || || || ||||||||
Sbjct: 2943845 ggacgaacgccttccgcgcgcttgatgcccttggggtaggcgacaagat 2943893
Score = 67.9 bits (34), Expect = 3e-08
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 89 gggcgtcgaggagatcgtcatcgccggcgccgggctcgccggactcgccacggccctggg 148
||||||||||| |||||||||||||||||||| ||||| || ||||| ||||| || ||
Sbjct: 2946616 gggcgtcgagggcatcgtcatcgccggcgccggcctcgcggggctcgcgacggcgctcgg 2946675
Query: 149 gttgcacagg 158
||| ||||||
Sbjct: 2946676 gttacacagg 2946685
Score = 61.9 bits (31), Expect = 2e-06
Identities = 61/71 (85%)
Strand = Plus / Plus
Query: 303 aggctggtggccttctctgcatccacaggcgaggctgccgcggaagtgagcctaaagatg 362
|||||| ||||||||||||||||||| || ||| |||||||| | |||| |||||||||
Sbjct: 2947418 aggctgttggccttctctgcatccacgggagagcctgccgcgaagttgagtctaaagatg 2947477
Query: 363 cagggcaaaag 373
|| || |||||
Sbjct: 2947478 caagggaaaag 2947488
Score = 61.9 bits (31), Expect = 2e-06
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 98 ggagatcgtcatcgccggcgccgggctcgccggactcgc 136
|||||||||||||||||||||||| |||||||| |||||
Sbjct: 2943631 ggagatcgtcatcgccggcgccggcctcgccgggctcgc 2943669
Score = 56.0 bits (28), Expect = 1e-04
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 387 attcgttgcgtgaagcgcaacttcctgctggagacgctgg 426
||||| |||||||||||||||||||| |||||||| ||||
Sbjct: 2947621 attcggtgcgtgaagcgcaacttcctactggagactctgg 2947660
Score = 52.0 bits (26), Expect = 0.002
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 303 aggctggtggccttctctgcatccac 328
||||||||||||||||||||||||||
Sbjct: 2975801 aggctggtggccttctctgcatccac 2975826
Score = 44.1 bits (22), Expect = 0.37
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 176 ggtgctggagtcgtcggcgacgctgcgggcgtcggggt 213
|||||||||||||||| || ||| |||||||||||||
Sbjct: 2940530 ggtgctggagtcgtcgccggagctccgggcgtcggggt 2940567
Score = 44.1 bits (22), Expect = 0.37
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 176 ggtgctggagtcgtcggcgacgctgcgggcgtcggggt 213
|||||||||||||||| || ||| |||||||||||||
Sbjct: 2916900 ggtgctggagtcgtcgccggagctccgggcgtcggggt 2916937
Score = 42.1 bits (21), Expect = 1.4
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 394 gcgtgaagcgcaacttcctgctggagacgctgg 426
||||||||||||||||||| | ||||||||||
Sbjct: 2976209 gcgtgaagcgcaacttcctacgagagacgctgg 2976241
>dbj|AB103506.1 | Serratia marcescens tnpR, blaTEM, rmtB, orfA genes for resolvase,
beta-lactamase TEM-1, 16S rRNA methylase, hypothetical
protein, partial and complete cds
Length = 4566
Score = 40.1 bits (20), Expect = 5.7
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 300 gagaggctggtggccttctc 319
||||||||||||||||||||
Sbjct: 3710 gagaggctggtggccttctc 3729
>emb|AL663091.13 | Mouse DNA sequence from clone RP23-392P11 on chromosome 2, complete
sequence
Length = 196078
Score = 40.1 bits (20), Expect = 5.7
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 278 cagggagcaccacctgctct 297
||||||||||||||||||||
Sbjct: 64851 cagggagcaccacctgctct 64832
Database: nt
Posted date: May 29, 2006 11:10 AM
Number of letters in database: 3,984,495,279
Number of sequences in database: 917,343
Database: /shigen/export/home/twatanab/db/nt/nt.01
Posted date: May 29, 2006 11:16 AM
Number of letters in database: 3,988,174,986
Number of sequences in database: 835,257
Database: /shigen/export/home/twatanab/db/nt/nt.02
Posted date: May 29, 2006 11:21 AM
Number of letters in database: 3,991,246,324
Number of sequences in database: 771,481
Database: /shigen/export/home/twatanab/db/nt/nt.03
Posted date: May 29, 2006 11:27 AM
Number of letters in database: 3,990,718,311
Number of sequences in database: 977,174
Database: /shigen/export/home/twatanab/db/nt/nt.04
Posted date: May 29, 2006 11:29 AM
Number of letters in database: 1,278,410,368
Number of sequences in database: 400,813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,709,901
Number of Sequences: 3902068
Number of extensions: 2709901
Number of successful extensions: 57344
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 55550
Number of HSP's gapped (non-prelim): 1793
length of query: 426
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 404
effective length of database: 17,147,199,772
effective search space: 6927468707888
effective search space used: 6927468707888
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)