ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart52b02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AK106358.1| Oryza sativa (japonica cultivar-group) cDNA clon... 337 2e-89
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 180 2e-42
3gb|AC134233.3| Oryza sativa (japonica cultivar-group) chromosome... 180 2e-42
4dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 180 2e-42
5dbj|AK103088.1| Oryza sativa (japonica cultivar-group) cDNA clon... 167 4e-38
6dbj|AK106420.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 1e-04
7gb|AE004755.1| Pseudomonas aeruginosa PAO1, section 316 of 529 o... 48 0.023
8ref|XM_515380.1| PREDICTED: Pan troglodytes LOC459125 (LOC459125... 44 0.37
9emb|AL731628.4|OSJN00282 Oryza sativa genomic DNA, chromosome 4,... 44 0.37
10ref|NM_001029883.1| Homo sapiens similar to cDNA sequence BC0270... 44 0.37
11gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome 44 0.37
12dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.37
13gb|AC105398.3| Homo sapiens BAC clone RP11-656O12 from 2, comple... 44 0.37
14gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 44 0.37
15emb|BX572600.1| Rhodopseudomonas palustris CGA009 complete genom... 42 1.4
16emb|BX572597.1| Rhodopseudomonas palustris CGA009 complete genom... 42 1.4
17gb|AC105081.4| Homo sapiens chromosome 8, clone CTC-788C1, compl... 42 1.4
18dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 42 1.4
19dbj|AP003351.2| Homo sapiens genomic DNA, chromosome 8q23, clone... 42 1.4
20ref|XM_476770.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.7
21gb|AC149084.5| Mus musculus BAC clone RP23-173A12 from chromosom... 40 5.7
22gb|AC145549.3| Mus musculus BAC clone RP23-21M23 from chromosome... 40 5.7
23gb|AC132957.3| Mus musculus BAC clone RP23-149E9 from chromosome... 40 5.7
24emb|Z92967.1|CEF14D1 Caenorhabditis elegans Cosmid F14D1, comple... 40 5.7
25emb|CR855994.1| Wallaby DNA sequence from clone MEKBa-69G12, com... 40 5.7
26gb|AY286456.1| Mycobacterium gadium strain ATCC 27726 RecA (recA... 40 5.7
27gb|DQ397556.1| Cenarchaeum symbiosum clone C13A10, complete sequ... 40 5.7
28gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 40 5.7
29gb|AE012435.1| Xanthomonas campestris pv. campestris str. ATCC 3... 40 5.7
30gb|CP000133.1| Rhizobium etli CFN 42, complete genome 40 5.7
31dbj|AP007154.1| Aspergillus oryzae RIB40 genomic DNA, SC001 40 5.7
32dbj|AB207867.1| Escherichia coli transposon Tn2610, complete seq... 40 5.7
33gb|AF261825.2| Salmonella enterica subsp. enterica serovar Typhi... 40 5.7
34gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, ... 40 5.7
35gb|AF386507.1|AF386507 Streptomyces lavendulae complestatin bios... 40 5.7
36gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 40 5.7
37gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete g... 40 5.7
38dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
39dbj|AP006878.1| Thermococcus kodakarensis KOD1 DNA, complete genome 40 5.7
40gb|AC073218.6| Homo sapiens BAC clone RP11-529E15 from 2, comple... 40 5.7
41dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 5.7
42gb|AF240624.1|AF240624 Homo sapiens clone 11qtel_2072draft_c seq... 40 5.7
43dbj|AP004670.4| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
44dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 40 5.7
45dbj|AB103506.1| Serratia marcescens tnpR, blaTEM, rmtB, orfA gen... 40 5.7
46emb|CT025832.1| Acinetobacter baumannii str. AYE. Genomics of Mu... 40 5.7
47gb|AF071555.1|AF071555 Salmonella typhimurium DT104 antibiotic r... 40 5.7
48emb|X14716.1|ACNIFA2 Azorhizobium caulinodans nifA gene for nitr... 40 5.7
49emb|X08014.1|ACNIFA Azorhizobium caulinodans nifA gene 40 5.7
50dbj|AP003039.3| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 5.7
51gb|AC170878.4| Mus musculus BAC clone RP24-226F17 from chromosom... 40 5.7
52emb|AL663091.13| Mouse DNA sequence from clone RP23-392P11 on ch... 40 5.7

>dbj|AK106358.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-102-A09, full
           insert sequence
          Length = 1661

 Score =  337 bits (170), Expect = 2e-89
 Identities = 296/338 (87%)
 Strand = Plus / Plus

                                                                       
Query: 89  gggcgtcgaggagatcgtcatcgccggcgccgggctcgccggactcgccacggccctggg 148
           |||||||||||  |||||||||||||||||||| ||||| || ||||| ||||| || ||
Sbjct: 114 gggcgtcgagggcatcgtcatcgccggcgccggcctcgcggggctcgcgacggcgctcgg 173

                                                                       
Query: 149 gttgcacaggaaaggggttcggagcgtggtgctggagtcgtcggcgacgctgcgggcgtc 208
           ||| ||||||||||||||  ||||| ||||||||||||||||||||||||||||||||||
Sbjct: 174 gttacacaggaaaggggtgaggagcctggtgctggagtcgtcggcgacgctgcgggcgtc 233

                                                                       
Query: 209 ggggtacgcgttcaacacatggaccaacgccttccgcgcgctcgatgccctcggcgttgg 268
            |||| ||||||||  |||||||| |||||||||||||||||||| ||||| || || ||
Sbjct: 234 cgggttcgcgttcacgacatggacgaacgccttccgcgcgctcgacgcccttggtgtcgg 293

                                                                       
Query: 269 ggacaagatcagggagcaccacctgctctacgagaggctggtggccttctctgcatccac 328
            ||||||||||||||||| || |||||||||||||||||| |||||||||||||||||||
Sbjct: 294 cgacaagatcagggagcatcatctgctctacgagaggctgttggccttctctgcatccac 353

                                                                       
Query: 329 aggcgaggctgccgcggaagtgagcctaaagatgcagggcaaaagcggtcctcacgaaat 388
            || ||| |||||||| |  |||| ||||||||||| || ||||| || || || || ||
Sbjct: 354 gggagagcctgccgcgaagttgagtctaaagatgcaagggaaaagtggaccgcatgagat 413

                                                 
Query: 389 tcgttgcgtgaagcgcaacttcctgctggagacgctgg 426
           ||| |||||||||||||||||||| |||||||| ||||
Sbjct: 414 tcggtgcgtgaagcgcaacttcctactggagactctgg 451



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  180 bits (91), Expect = 2e-42
 Identities = 136/151 (90%)
 Strand = Plus / Plus

                                                                           
Query: 155     caggaaaggggttcggagcgtggtgctggagtcgtcggcgacgctgcgggcgtcggggta 214
               ||||||||||||  ||||| |||||||||||||||||||||||||||||||||| |||| 
Sbjct: 2946684 caggaaaggggtgaggagcctggtgctggagtcgtcggcgacgctgcgggcgtccgggtt 2946743

                                                                           
Query: 215     cgcgttcaacacatggaccaacgccttccgcgcgctcgatgccctcggcgttggggacaa 274
               ||||||||  |||||||| |||||||||||||||||||| ||||| || || || |||||
Sbjct: 2946744 cgcgttcacgacatggacgaacgccttccgcgcgctcgacgcccttggtgtcggcgacaa 2946803

                                              
Query: 275     gatcagggagcaccacctgctctacgagagg 305
               |||||||||||| || |||||||||||||||
Sbjct: 2946804 gatcagggagcatcatctgctctacgagagg 2946834



 Score =  121 bits (61), Expect = 2e-24
 Identities = 97/109 (88%)
 Strand = Plus / Plus

                                                                           
Query: 169     ggagcgtggtgctggagtcgtcggcgacgctgcgggcgtcggggtacgcgttcaacacat 228
               ||||||||||||||||||||||| ||||||||||| |||| ||||  ||||||| |||||
Sbjct: 2943674 ggagcgtggtgctggagtcgtcgccgacgctgcggacgtccgggttggcgttcatcacat 2943733

                                                                
Query: 229     ggaccaacgccttccgcgcgctcgatgccctcggcgttggggacaagat 277
               |||| ||||||||||||||||| |||||||| || || || ||||||||
Sbjct: 2943734 ggacgaacgccttccgcgcgcttgatgcccttggggtaggcgacaagat 2943782



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 61/70 (87%)
 Strand = Plus / Plus

                                                                           
Query: 89      gggcgtcgaggagatcgtcatcgccggcgccgggctcgccggactcgccacggccctggg 148
               |||||||||||  |||||||||||||||||||| ||||| || ||||| ||||| || ||
Sbjct: 2946505 gggcgtcgagggcatcgtcatcgccggcgccggcctcgcggggctcgcgacggcgctcgg 2946564

                         
Query: 149     gttgcacagg 158
               ||| ||||||
Sbjct: 2946565 gttacacagg 2946574



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 61/71 (85%)
 Strand = Plus / Plus

                                                                           
Query: 303     aggctggtggccttctctgcatccacaggcgaggctgccgcggaagtgagcctaaagatg 362
               |||||| ||||||||||||||||||| || ||| |||||||| |  |||| |||||||||
Sbjct: 2947307 aggctgttggccttctctgcatccacgggagagcctgccgcgaagttgagtctaaagatg 2947366

                          
Query: 363     cagggcaaaag 373
               || || |||||
Sbjct: 2947367 caagggaaaag 2947377



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 37/39 (94%)
 Strand = Plus / Plus

                                                      
Query: 98      ggagatcgtcatcgccggcgccgggctcgccggactcgc 136
               |||||||||||||||||||||||| |||||||| |||||
Sbjct: 2943520 ggagatcgtcatcgccggcgccggcctcgccgggctcgc 2943558



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                       
Query: 387     attcgttgcgtgaagcgcaacttcctgctggagacgctgg 426
               ||||| |||||||||||||||||||| |||||||| ||||
Sbjct: 2947510 attcggtgcgtgaagcgcaacttcctactggagactctgg 2947549



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                         
Query: 303     aggctggtggccttctctgcatccac 328
               ||||||||||||||||||||||||||
Sbjct: 2975690 aggctggtggccttctctgcatccac 2975715



 Score = 44.1 bits (22), Expect = 0.37
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                     
Query: 176     ggtgctggagtcgtcggcgacgctgcgggcgtcggggt 213
               |||||||||||||||| ||  ||| |||||||||||||
Sbjct: 2940419 ggtgctggagtcgtcgccggagctccgggcgtcggggt 2940456



 Score = 44.1 bits (22), Expect = 0.37
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                     
Query: 176     ggtgctggagtcgtcggcgacgctgcgggcgtcggggt 213
               |||||||||||||||| ||  ||| |||||||||||||
Sbjct: 2916789 ggtgctggagtcgtcgccggagctccgggcgtcggggt 2916826



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                                
Query: 394     gcgtgaagcgcaacttcctgctggagacgctgg 426
               ||||||||||||||||||| |  ||||||||||
Sbjct: 2976098 gcgtgaagcgcaacttcctacgagagacgctgg 2976130



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>gb|AC134233.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0016I15, complete sequence
          Length = 166282

 Score =  180 bits (91), Expect = 2e-42
 Identities = 136/151 (90%)
 Strand = Plus / Plus

                                                                         
Query: 155   caggaaaggggttcggagcgtggtgctggagtcgtcggcgacgctgcgggcgtcggggta 214
             ||||||||||||  ||||| |||||||||||||||||||||||||||||||||| |||| 
Sbjct: 84171 caggaaaggggtgaggagcctggtgctggagtcgtcggcgacgctgcgggcgtccgggtt 84230

                                                                         
Query: 215   cgcgttcaacacatggaccaacgccttccgcgcgctcgatgccctcggcgttggggacaa 274
             ||||||||  |||||||| |||||||||||||||||||| ||||| || || || |||||
Sbjct: 84231 cgcgttcacgacatggacgaacgccttccgcgcgctcgacgcccttggtgtcggcgacaa 84290

                                            
Query: 275   gatcagggagcaccacctgctctacgagagg 305
             |||||||||||| || |||||||||||||||
Sbjct: 84291 gatcagggagcatcatctgctctacgagagg 84321



 Score =  121 bits (61), Expect = 2e-24
 Identities = 97/109 (88%)
 Strand = Plus / Plus

                                                                         
Query: 169   ggagcgtggtgctggagtcgtcggcgacgctgcgggcgtcggggtacgcgttcaacacat 228
             ||||||||||||||||||||||| ||||||||||| |||| ||||  ||||||| |||||
Sbjct: 81161 ggagcgtggtgctggagtcgtcgccgacgctgcggacgtccgggttggcgttcatcacat 81220

                                                              
Query: 229   ggaccaacgccttccgcgcgctcgatgccctcggcgttggggacaagat 277
             |||| ||||||||||||||||| |||||||| || || || ||||||||
Sbjct: 81221 ggacgaacgccttccgcgcgcttgatgcccttggggtaggcgacaagat 81269



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 61/70 (87%)
 Strand = Plus / Plus

                                                                         
Query: 89    gggcgtcgaggagatcgtcatcgccggcgccgggctcgccggactcgccacggccctggg 148
             |||||||||||  |||||||||||||||||||| ||||| || ||||| ||||| || ||
Sbjct: 83992 gggcgtcgagggcatcgtcatcgccggcgccggcctcgcggggctcgcgacggcgctcgg 84051

                       
Query: 149   gttgcacagg 158
             ||| ||||||
Sbjct: 84052 gttacacagg 84061



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 61/71 (85%)
 Strand = Plus / Plus

                                                                         
Query: 303   aggctggtggccttctctgcatccacaggcgaggctgccgcggaagtgagcctaaagatg 362
             |||||| ||||||||||||||||||| || ||| |||||||| |  |||| |||||||||
Sbjct: 84794 aggctgttggccttctctgcatccacgggagagcctgccgcgaagttgagtctaaagatg 84853

                        
Query: 363   cagggcaaaag 373
             || || |||||
Sbjct: 84854 caagggaaaag 84864



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 37/39 (94%)
 Strand = Plus / Plus

                                                    
Query: 98    ggagatcgtcatcgccggcgccgggctcgccggactcgc 136
             |||||||||||||||||||||||| |||||||| |||||
Sbjct: 81007 ggagatcgtcatcgccggcgccggcctcgccgggctcgc 81045



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                     
Query: 387   attcgttgcgtgaagcgcaacttcctgctggagacgctgg 426
             ||||| |||||||||||||||||||| |||||||| ||||
Sbjct: 84997 attcggtgcgtgaagcgcaacttcctactggagactctgg 85036



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                        
Query: 303    aggctggtggccttctctgcatccac 328
              ||||||||||||||||||||||||||
Sbjct: 113177 aggctggtggccttctctgcatccac 113202



 Score = 44.1 bits (22), Expect = 0.37
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                   
Query: 176   ggtgctggagtcgtcggcgacgctgcgggcgtcggggt 213
             |||||||||||||||| ||  ||| |||||||||||||
Sbjct: 77906 ggtgctggagtcgtcgccggagctccgggcgtcggggt 77943



 Score = 44.1 bits (22), Expect = 0.37
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                   
Query: 176   ggtgctggagtcgtcggcgacgctgcgggcgtcggggt 213
             |||||||||||||||| ||  ||| |||||||||||||
Sbjct: 54276 ggtgctggagtcgtcgccggagctccgggcgtcggggt 54313



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                               
Query: 394    gcgtgaagcgcaacttcctgctggagacgctgg 426
              ||||||||||||||||||| |  ||||||||||
Sbjct: 113585 gcgtgaagcgcaacttcctacgagagacgctgg 113617



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  180 bits (91), Expect = 2e-42
 Identities = 136/151 (90%)
 Strand = Plus / Plus

                                                                           
Query: 155     caggaaaggggttcggagcgtggtgctggagtcgtcggcgacgctgcgggcgtcggggta 214
               ||||||||||||  ||||| |||||||||||||||||||||||||||||||||| |||| 
Sbjct: 2946795 caggaaaggggtgaggagcctggtgctggagtcgtcggcgacgctgcgggcgtccgggtt 2946854

                                                                           
Query: 215     cgcgttcaacacatggaccaacgccttccgcgcgctcgatgccctcggcgttggggacaa 274
               ||||||||  |||||||| |||||||||||||||||||| ||||| || || || |||||
Sbjct: 2946855 cgcgttcacgacatggacgaacgccttccgcgcgctcgacgcccttggtgtcggcgacaa 2946914

                                              
Query: 275     gatcagggagcaccacctgctctacgagagg 305
               |||||||||||| || |||||||||||||||
Sbjct: 2946915 gatcagggagcatcatctgctctacgagagg 2946945



 Score =  121 bits (61), Expect = 2e-24
 Identities = 97/109 (88%)
 Strand = Plus / Plus

                                                                           
Query: 169     ggagcgtggtgctggagtcgtcggcgacgctgcgggcgtcggggtacgcgttcaacacat 228
               ||||||||||||||||||||||| ||||||||||| |||| ||||  ||||||| |||||
Sbjct: 2943785 ggagcgtggtgctggagtcgtcgccgacgctgcggacgtccgggttggcgttcatcacat 2943844

                                                                
Query: 229     ggaccaacgccttccgcgcgctcgatgccctcggcgttggggacaagat 277
               |||| ||||||||||||||||| |||||||| || || || ||||||||
Sbjct: 2943845 ggacgaacgccttccgcgcgcttgatgcccttggggtaggcgacaagat 2943893



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 61/70 (87%)
 Strand = Plus / Plus

                                                                           
Query: 89      gggcgtcgaggagatcgtcatcgccggcgccgggctcgccggactcgccacggccctggg 148
               |||||||||||  |||||||||||||||||||| ||||| || ||||| ||||| || ||
Sbjct: 2946616 gggcgtcgagggcatcgtcatcgccggcgccggcctcgcggggctcgcgacggcgctcgg 2946675

                         
Query: 149     gttgcacagg 158
               ||| ||||||
Sbjct: 2946676 gttacacagg 2946685



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 61/71 (85%)
 Strand = Plus / Plus

                                                                           
Query: 303     aggctggtggccttctctgcatccacaggcgaggctgccgcggaagtgagcctaaagatg 362
               |||||| ||||||||||||||||||| || ||| |||||||| |  |||| |||||||||
Sbjct: 2947418 aggctgttggccttctctgcatccacgggagagcctgccgcgaagttgagtctaaagatg 2947477

                          
Query: 363     cagggcaaaag 373
               || || |||||
Sbjct: 2947478 caagggaaaag 2947488



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 37/39 (94%)
 Strand = Plus / Plus

                                                      
Query: 98      ggagatcgtcatcgccggcgccgggctcgccggactcgc 136
               |||||||||||||||||||||||| |||||||| |||||
Sbjct: 2943631 ggagatcgtcatcgccggcgccggcctcgccgggctcgc 2943669



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                       
Query: 387     attcgttgcgtgaagcgcaacttcctgctggagacgctgg 426
               ||||| |||||||||||||||||||| |||||||| ||||
Sbjct: 2947621 attcggtgcgtgaagcgcaacttcctactggagactctgg 2947660



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                         
Query: 303     aggctggtggccttctctgcatccac 328
               ||||||||||||||||||||||||||
Sbjct: 2975801 aggctggtggccttctctgcatccac 2975826



 Score = 44.1 bits (22), Expect = 0.37
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                     
Query: 176     ggtgctggagtcgtcggcgacgctgcgggcgtcggggt 213
               |||||||||||||||| ||  ||| |||||||||||||
Sbjct: 2940530 ggtgctggagtcgtcgccggagctccgggcgtcggggt 2940567



 Score = 44.1 bits (22), Expect = 0.37
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                     
Query: 176     ggtgctggagtcgtcggcgacgctgcgggcgtcggggt 213
               |||||||||||||||| ||  ||| |||||||||||||
Sbjct: 2916900 ggtgctggagtcgtcgccggagctccgggcgtcggggt 2916937



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                                
Query: 394     gcgtgaagcgcaacttcctgctggagacgctgg 426
               ||||||||||||||||||| |  ||||||||||
Sbjct: 2976209 gcgtgaagcgcaacttcctacgagagacgctgg 2976241



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>dbj|AK103088.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033118I15, full
           insert sequence
          Length = 1518

 Score =  167 bits (84), Expect = 4e-38
 Identities = 156/180 (86%)
 Strand = Plus / Plus

                                                                       
Query: 98  ggagatcgtcatcgccggcgccgggctcgccggactcgccacggccctggggttgcacag 157
           |||||||||||||||||||||||| |||||||| |||||   |||||| ||  |||||||
Sbjct: 100 ggagatcgtcatcgccggcgccggcctcgccgggctcgcagtggccctcggactgcacag 159

                                                                       
Query: 158 gaaaggggttcggagcgtggtgctggagtcgtcggcgacgctgcgggcgtcggggtacgc 217
           ||||||  |  ||||||||||||||||||||||| ||||||||||| |||| ||||  ||
Sbjct: 160 gaaaggactgaggagcgtggtgctggagtcgtcgccgacgctgcggacgtccgggttggc 219

                                                                       
Query: 218 gttcaacacatggaccaacgccttccgcgcgctcgatgccctcggcgttggggacaagat 277
           ||||| ||||||||| ||||||||||||||||| |||||||| || || || ||||||||
Sbjct: 220 gttcatcacatggacgaacgccttccgcgcgcttgatgcccttggggtaggcgacaagat 279



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>dbj|AK106420.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-103-B02, full
           insert sequence
          Length = 1590

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 82/100 (82%)
 Strand = Plus / Plus

                                                                       
Query: 114 ggcgccgggctcgccggactcgccacggccctggggttgcacaggaaaggggttcggagc 173
           ||||||||| ||||||| ||||||  ||| || ||| ||||||||||||||||   | ||
Sbjct: 277 ggcgccgggatcgccggcctcgccgtggctctcgggctgcacaggaaaggggtgaagtgc 336

                                                   
Query: 174 gtggtgctggagtcgtcggcgacgctgcgggcgtcggggt 213
             ||||||| |||||||| ||  ||| |||||||||||||
Sbjct: 337 tcggtgctgaagtcgtcgccggagctccgggcgtcggggt 376



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>gb|AE004755.1| Pseudomonas aeruginosa PAO1, section 316 of 529 of the complete
            genome
          Length = 14759

 Score = 48.1 bits (24), Expect = 0.023
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                        
Query: 100  agatcgtcatcgccggcgccgggctcgccggactcgccacggcc 143
            ||||||||||||||||||||||  ||| ||| |||||| |||||
Sbjct: 8363 agatcgtcatcgccggcgccggcatcggcgggctcgccgcggcc 8406



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>ref|XM_515380.1| PREDICTED: Pan troglodytes LOC459125 (LOC459125), mRNA
          Length = 4679

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 301  agaggctggtggccttctctgc 322
            ||||||||||||||||||||||
Sbjct: 2851 agaggctggtggccttctctgc 2830



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>emb|AL731628.4|OSJN00282 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0088C09,
             complete sequence
          Length = 96079

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                               
Query: 114   ggcgccgggctcgccggactcgccacggccctgg 147
             ||||||||| ||||||| ||||||||||| ||||
Sbjct: 36294 ggcgccgggatcgccgggctcgccacggcgctgg 36327



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>ref|NM_001029883.1| Homo sapiens similar to cDNA sequence BC027072 (FLJ34931), mRNA
          Length = 7044

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 301  agaggctggtggccttctctgc 322
            ||||||||||||||||||||||
Sbjct: 2851 agaggctggtggccttctctgc 2830



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>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 101     gatcgtcatcgccggcgccggg 122
               ||||||||||||||||||||||
Sbjct: 2671427 gatcgtcatcgccggcgccggg 2671406



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                                  
Query: 114      ggcgccgggctcgccggactcgccacggccctgg 147
                ||||||||| ||||||| ||||||||||| ||||
Sbjct: 20933071 ggcgccgggatcgccgggctcgccacggcgctgg 20933104



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>gb|AC105398.3| Homo sapiens BAC clone RP11-656O12 from 2, complete sequence
          Length = 170262

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 301    agaggctggtggccttctctgc 322
              ||||||||||||||||||||||
Sbjct: 108271 agaggctggtggccttctctgc 108292



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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 110     cgccggcgccgggctcgccgga 131
               ||||||||||||||||||||||
Sbjct: 1162663 cgccggcgccgggctcgccgga 1162642



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>emb|BX572600.1| Rhodopseudomonas palustris CGA009 complete genome; segment 8/16
          Length = 349640

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 113    cggcgccgggctcgccggact 133
              |||||||||||||||||||||
Sbjct: 294822 cggcgccgggctcgccggact 294842



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>emb|BX572597.1| Rhodopseudomonas palustris CGA009 complete genome; segment 5/16
          Length = 349737

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 109   tcgccggcgccgggctcgccg 129
             |||||||||||||||||||||
Sbjct: 57160 tcgccggcgccgggctcgccg 57180



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>gb|AC105081.4| Homo sapiens chromosome 8, clone CTC-788C1, complete sequence
          Length = 158605

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 303   aggctggtggccttctctgca 323
             |||||||||||||||||||||
Sbjct: 96141 aggctggtggccttctctgca 96161



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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 188     gtcggcgacgctgcgggcgtcgggg 212
               |||||||| ||||||||||||||||
Sbjct: 7304928 gtcggcgaagctgcgggcgtcgggg 7304904



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>dbj|AP003351.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1184D12
          Length = 176854

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 303   aggctggtggccttctctgca 323
             |||||||||||||||||||||
Sbjct: 18593 aggctggtggccttctctgca 18573



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>ref|XM_476770.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 657

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 97  aggagatcgtcatcgccggcgccg 120
           |||||||||||||||||| |||||
Sbjct: 41  aggagatcgtcatcgccgtcgccg 64



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>gb|AC149084.5| Mus musculus BAC clone RP23-173A12 from chromosome 19, complete
             sequence
          Length = 188848

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 76    tgcggtggatggagggcgtcgaggagat 103
             ||||||||| |||||| |||||||||||
Sbjct: 74081 tgcggtggagggagggagtcgaggagat 74108



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>gb|AC145549.3| Mus musculus BAC clone RP23-21M23 from chromosome 19, complete sequence
          Length = 247655

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 76     tgcggtggatggagggcgtcgaggagat 103
              ||||||||| |||||| |||||||||||
Sbjct: 132864 tgcggtggagggagggagtcgaggagat 132891



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>gb|AC132957.3| Mus musculus BAC clone RP23-149E9 from chromosome 19, complete sequence
          Length = 246177

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 76     tgcggtggatggagggcgtcgaggagat 103
              ||||||||| |||||| |||||||||||
Sbjct: 193068 tgcggtggagggagggagtcgaggagat 193095



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>emb|Z92967.1|CEF14D1 Caenorhabditis elegans Cosmid F14D1, complete sequence
          Length = 32703

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 90    ggcgtcgaggagatcgtcatcgcc 113
             |||| |||||||||||||||||||
Sbjct: 11221 ggcgacgaggagatcgtcatcgcc 11198



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>emb|CR855994.1| Wallaby DNA sequence from clone MEKBa-69G12, complete sequence
          Length = 174698

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 32    ttcaccactctgctatttctttcc 55
             |||||||||||||| |||||||||
Sbjct: 36172 ttcaccactctgctctttctttcc 36195



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>gb|AY286456.1| Mycobacterium gadium strain ATCC 27726 RecA (recA) gene, partial
           cds
          Length = 966

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 401 gcgcaacttcctgctggaga 420
           ||||||||||||||||||||
Sbjct: 918 gcgcaacttcctgctggaga 937



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>gb|DQ397556.1| Cenarchaeum symbiosum clone C13A10, complete sequence
          Length = 40870

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 327   acaggcgaggctgccgcgga 346
             ||||||||||||||||||||
Sbjct: 14235 acaggcgaggctgccgcgga 14254



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>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 107     catcgccggcgccgggctcg 126
               ||||||||||||||||||||
Sbjct: 3854543 catcgccggcgccgggctcg 3854524



 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 106    tcatcgccggcgccgggctcgccg 129
              ||||||||||||||| ||||||||
Sbjct: 671675 tcatcgccggcgccgcgctcgccg 671652



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>gb|AE012435.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 343
            of 460 of the complete genome
          Length = 11282

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 104  cgtcatcgccggcgccgggctcgc 127
            |||||||||| |||||||||||||
Sbjct: 4327 cgtcatcgcctgcgccgggctcgc 4350



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>gb|CP000133.1| Rhizobium etli CFN 42, complete genome
          Length = 4381608

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 109     tcgccggcgccgggctcgccggac 132
               |||||||||||||||||| |||||
Sbjct: 1680633 tcgccggcgccgggctcggcggac 1680610



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>dbj|AP007154.1| Aspergillus oryzae RIB40 genomic DNA, SC001
          Length = 2005935

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 103    tcgtcatcgccggcgccggg 122
              ||||||||||||||||||||
Sbjct: 774062 tcgtcatcgccggcgccggg 774043



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>dbj|AB207867.1| Escherichia coli transposon Tn2610, complete sequence
          Length = 23883

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 300  gagaggctggtggccttctc 319
            ||||||||||||||||||||
Sbjct: 8926 gagaggctggtggccttctc 8907



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>gb|AF261825.2| Salmonella enterica subsp. enterica serovar Typhimurium genomic island
             I, complete sequence
          Length = 47723

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 300   gagaggctggtggccttctc 319
             ||||||||||||||||||||
Sbjct: 35977 gagaggctggtggccttctc 35958



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>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 104     cgtcatcgccggcgccgggctcgc 127
               |||||||||| |||||||||||||
Sbjct: 1177986 cgtcatcgcctgcgccgggctcgc 1177963



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>gb|AF386507.1|AF386507 Streptomyces lavendulae complestatin biosynthetic gene cluster,
             complete sequence
          Length = 55972

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 109   tcgccggcgccgggctcgcc 128
             ||||||||||||||||||||
Sbjct: 14370 tcgccggcgccgggctcgcc 14389



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>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 94      tcgaggagatcgtcatcgccggcg 117
               |||| |||||||||||||||||||
Sbjct: 4999118 tcgacgagatcgtcatcgccggcg 4999095



 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 107     catcgccggcgccgggctcg 126
               ||||||||||||||||||||
Sbjct: 2628540 catcgccggcgccgggctcg 2628559



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>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome
          Length = 2909809

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 113     cggcgccgggctcgccggactcgc 136
               ||||||||||||||||| ||||||
Sbjct: 1071283 cggcgccgggctcgccgaactcgc 1071260



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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 97      aggagatcgtcatcgccggcgccg 120
               |||||||||||||||||| |||||
Sbjct: 3826276 aggagatcgtcatcgccgtcgccg 3826253



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>dbj|AP006878.1| Thermococcus kodakarensis KOD1 DNA, complete genome
          Length = 2088737

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 92     cgtcgaggagatcgtcatcg 111
              ||||||||||||||||||||
Sbjct: 992638 cgtcgaggagatcgtcatcg 992619



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>gb|AC073218.6| Homo sapiens BAC clone RP11-529E15 from 2, complete sequence
          Length = 150263

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 160   aaggggttcggagcgtggtgctgg 183
             |||||||| |||||||||||||||
Sbjct: 94399 aaggggtttggagcgtggtgctgg 94376



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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 113     cggcgccgggctcgccggactcgc 136
               |||||||| |||||||||||||||
Sbjct: 8959676 cggcgccgtgctcgccggactcgc 8959653



 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 104     cgtcatcgccggcgccgggctcgc 127
               |||| |||||||||||||||||||
Sbjct: 4438572 cgtcctcgccggcgccgggctcgc 4438549



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>gb|AF240624.1|AF240624 Homo sapiens clone 11qtel_2072draft_c sequence
          Length = 12583

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 302  gaggctggtggccttctctg 321
            ||||||||||||||||||||
Sbjct: 5502 gaggctggtggccttctctg 5521



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>dbj|AP004670.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0496D04
          Length = 197358

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 97    aggagatcgtcatcgccggcgccg 120
             |||||||||||||||||| |||||
Sbjct: 65388 aggagatcgtcatcgccgtcgccg 65365



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>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 110    cgccggcgccgggctcgccg 129
              ||||||||||||||||||||
Sbjct: 535267 cgccggcgccgggctcgccg 535286



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>dbj|AB103506.1| Serratia marcescens tnpR, blaTEM, rmtB, orfA genes for resolvase,
            beta-lactamase TEM-1, 16S rRNA methylase, hypothetical
            protein, partial and complete cds
          Length = 4566

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 300  gagaggctggtggccttctc 319
            ||||||||||||||||||||
Sbjct: 3710 gagaggctggtggccttctc 3729



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>emb|CT025832.1| Acinetobacter baumannii str. AYE. Genomics of Multi-Drug Resistance in
             Acinetobacter baumannii
          Length = 100001

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 300   gagaggctggtggccttctc 319
             ||||||||||||||||||||
Sbjct: 38555 gagaggctggtggccttctc 38536



 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 300   gagaggctggtggccttctc 319
             ||||||||||||||||||||
Sbjct: 33442 gagaggctggtggccttctc 33423



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>gb|AF071555.1|AF071555 Salmonella typhimurium DT104 antibiotic resistance gene cluster,
            complete sequence
          Length = 13077

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 300  gagaggctggtggccttctc 319
            ||||||||||||||||||||
Sbjct: 9939 gagaggctggtggccttctc 9920



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>emb|X14716.1|ACNIFA2 Azorhizobium caulinodans nifA gene for nitrogen fixation regulatory
            protein
          Length = 2641

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 110  cgccggcgccgggctcgccg 129
            ||||||||||||||||||||
Sbjct: 1887 cgccggcgccgggctcgccg 1868



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>emb|X08014.1|ACNIFA Azorhizobium caulinodans nifA gene
          Length = 2809

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 110  cgccggcgccgggctcgccg 129
            ||||||||||||||||||||
Sbjct: 2294 cgccggcgccgggctcgccg 2275



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>dbj|AP003039.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-116B3, complete
              sequence
          Length = 152252

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 302    gaggctggtggccttctctg 321
              ||||||||||||||||||||
Sbjct: 110442 gaggctggtggccttctctg 110461



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>gb|AC170878.4| Mus musculus BAC clone RP24-226F17 from chromosome 19, complete
             sequence
          Length = 148454

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 76    tgcggtggatggagggcgtcgaggagat 103
             ||||||||| |||||| |||||||||||
Sbjct: 11854 tgcggtggagggagggagtcgaggagat 11881



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>emb|AL663091.13| Mouse DNA sequence from clone RP23-392P11 on chromosome 2, complete
             sequence
          Length = 196078

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 278   cagggagcaccacctgctct 297
             ||||||||||||||||||||
Sbjct: 64851 cagggagcaccacctgctct 64832


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,709,901
Number of Sequences: 3902068
Number of extensions: 2709901
Number of successful extensions: 57344
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 55550
Number of HSP's gapped (non-prelim): 1793
length of query: 426
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 404
effective length of database: 17,147,199,772
effective search space: 6927468707888
effective search space used: 6927468707888
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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