ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart52a04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1K1279_HUMAN (Q96EK5) Protein KIAA1279 32 0.95
2GP156_HUMAN (Q8NFN8) Probable G-protein coupled receptor 156 (GA... 31 1.6
3RLA0_METMA (Q8PY51) Acidic ribosomal protein P0 homolog (L10E) 28 8.1
4NUOL_RICCN (Q92G97) NADH-quinone oxidoreductase chain L (EC 1.6.... 28 8.1

>K1279_HUMAN (Q96EK5) Protein KIAA1279|
          Length = 621

 Score = 31.6 bits (70), Expect = 0.95
 Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 6/92 (6%)
 Frame = -3

Query: 261 RKPYDCSHSSAAAVAGEEELRRMAAEDRGDARMEEDG------VAGMPSEMRRP*AATAR 100
           ++PY   +S+ A +   + L   A ED  +    EDG        G+P+E+  P    A+
Sbjct: 30  KEPYKSKYSARALLEEVKALLGPAPEDEDERPEAEDGPGAGDHALGLPAEVVEPEGPVAQ 89

Query: 99  REMRKGTSGKERRCRRIAIATEEVGAGRRALV 4
           R +R      E       I TEE+ AG   LV
Sbjct: 90  RAVRLAVI--EFHLGVNHIDTEELSAGEEHLV 119



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>GP156_HUMAN (Q8NFN8) Probable G-protein coupled receptor 156 (GABAB-related|
           G-protein coupled receptor) (G-protein coupled receptor
           PGR28)
          Length = 814

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 16/28 (57%), Positives = 17/28 (60%)
 Frame = +1

Query: 259 PSVHHHRVRKHVPGAHLRLPHVQGGHVP 342
           PS   HR  + VPGAH RL HVQ G  P
Sbjct: 617 PSSVGHRANRTVPGAHSRL-HVQNGDSP 643



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>RLA0_METMA (Q8PY51) Acidic ribosomal protein P0 homolog (L10E)|
          Length = 347

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -3

Query: 237 SSAAAVAGEEELRRMAAEDRGDARMEEDGVAGM 139
           ++ AA A EEE +    E+  +   EEDG+AG+
Sbjct: 310 ATVAAPAAEEEKKEEEPEEEEEDHAEEDGMAGL 342



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>NUOL_RICCN (Q92G97) NADH-quinone oxidoreductase chain L (EC 1.6.99.5) (NADH|
           dehydrogenase I, chain L) (NDH-1, chain L)
          Length = 657

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = +2

Query: 200 LNSSSPATAAAEECEQ-SYGFLPCTTTVFGN-MFLVLTYGFLMFKAATFLSAGS 355
           ++S      A   C Q  Y F+ C  + + + +F ++T+ F  FKA  FLSAGS
Sbjct: 306 MHSDIKKIIAYSTCSQLGYMFMACGVSAYNSGIFHLVTHAF--FKALLFLSAGS 357


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,076,018
Number of Sequences: 219361
Number of extensions: 490253
Number of successful extensions: 2141
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1985
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2137
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2735358828
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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