Clone Information

BLAST Search Result

Clone Name	bart51h08
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|XM_483407.1\| Oryza sativa (japonica cultivar-group), mRNA	218	1e-53
2	dbj\|AK067169.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	218	1e-53
3	gb\|BT016562.1\| Zea mays clone Contig395 mRNA sequence	168	9e-39
4	gb\|AY104002.1\| Zea mays PCO129304 mRNA sequence	168	9e-39
5	dbj\|AP008214.1\| Oryza sativa (japonica cultivar-group) genomic D...	103	5e-19
6	dbj\|AP003887.3\| Oryza sativa (japonica cultivar-group) genomic D...	103	5e-19
7	dbj\|AP008212.1\| Oryza sativa (japonica cultivar-group) genomic D...	78	3e-11
8	dbj\|AP003528.2\| Oryza sativa (japonica cultivar-group) genomic D...	78	3e-11
9	ref\|NM_127433.2\| Arabidopsis thaliana signal recognition particl...	42	1.5
10	gb\|AY735577.1\| Arabidopsis thaliana hypothetical protein AT2G187...	42	1.5
11	emb\|CR749461.1\| Homo sapiens mRNA; cDNA DKFZp779I0829 (from clon...	42	1.5
12	dbj\|AK097183.1\| Homo sapiens cDNA FLJ39864 fis, clone SPLEN2015258	42	1.5
13	ref\|XM_625969.1\| Cryptosporidium parvum Iowa II hypothetical pro...	42	1.5
14	gb\|AY085237.1\| Arabidopsis thaliana clone 14084 mRNA, complete s...	42	1.5
15	gb\|AY924743.1\| Arabidopsis thaliana hypothetical protein (At2g18...	42	1.5
16	gb\|AC008429.6\| Homo sapiens chromosome 5 clone CTC-308K20, compl...	42	1.5
17	ref\|NM_130941.2\| Danio rerio pl10 (pl10), mRNA	40	5.8
18	ref\|XM_513348.1\| PREDICTED: Pan troglodytes LOC456786 (LOC456786...	40	5.8
19	ref\|NM_172419.1\| Mus musculus RIKEN cDNA 9030612E09 gene (903061...	40	5.8
20	gb\|AC092779.5\| Oryza sativa chromosome 3 BAC OSJNBb0024N19 genom...	40	5.8
21	ref\|XM_591750.2\| PREDICTED: Bos taurus similar to kelch-like, tr...	40	5.8
22	ref\|XM_867128.1\| PREDICTED: Bos taurus similar to kelch-like, tr...	40	5.8
23	gb\|BT025359.1\| Bos taurus kelch-like 22 (Drosophila) (KLHL22), N...	40	5.8
24	gb\|BC059794.1\| Danio rerio pl10, mRNA (cDNA clone MGC:65735 IMAG...	40	5.8
25	gb\|CP000285.1\| Chromohalobacter salexigens DSM 3043, complete ge...	40	5.8
26	gb\|AC140482.2\| Mus musculus BAC clone RP24-133E1 from chromosome...	40	5.8
27	gb\|DP000009.1\| Oryza sativa (japonica cultivar-group) chromosome 3	40	5.8
28	emb\|CR388040.5\| Zebrafish DNA sequence from clone CH211-170D12 i...	40	5.8
29	ref\|XM_759430.1\| Theileria parva strain Muguga chromosome 4 DNA ...	40	5.8
30	gb\|AC112990.7\| Mus musculus chromosome 19, clone RP24-317E20, co...	40	5.8
31	gb\|AC110540.7\| Mus musculus chromosome 3, clone RP23-105B8, comp...	40	5.8
32	emb\|AL663070.15\| Human DNA sequence from clone RP3-342P20 on chr...	40	5.8
33	emb\|AL031778.1\|HS34B21 Human DNA sequence from clone RP1-34B21 o...	40	5.8
34	ref\|XM_965363.1\| PREDICTED: Tribolium castaneum similar to CG542...	40	5.8
35	emb\|AJ243125.1\|CHI243125 Capra hircus mRNA for Bac7.5 protein	40	5.8
36	gb\|BC069771.1\| Homo sapiens cDNA clone IMAGE:7262645, with appar...	40	5.8
37	gb\|BC069694.1\| Homo sapiens cDNA clone IMAGE:7262633, with appar...	40	5.8
38	gb\|CP000301.1\| Rhodopseudomonas palustris BisB18, complete genome	40	5.8
39	dbj\|AK027396.1\| Homo sapiens cDNA FLJ14490 fis, clone MAMMA1002886	40	5.8
40	ref\|XM_941481.1\| PREDICTED: Homo sapiens hypothetical protein LO...	40	5.8
41	dbj\|AK029173.1\| Mus musculus 0 day neonate head cDNA, RIKEN full...	40	5.8
42	dbj\|AK018547.1\| Mus musculus adult male colon cDNA, RIKEN full-l...	40	5.8
43	dbj\|AP008209.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	5.8
44	dbj\|AP008208.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	5.8
45	gb\|AC021171.6\| Homo sapiens BAC clone RP11-674I16 from 2, comple...	40	5.8
46	gb\|AC015651.18\|AC015651 Homo sapiens chromosome 17, clone RP11-5...	40	5.8
47	ref\|NM_001009301.1\| Ovis aries BAC7.5 protein (BAC7.5), mRNA	40	5.8
48	gb\|AC091312.8\| Mus musculus chromosome 3, clone RP23-333N1, comp...	40	5.8
49	dbj\|AP005694.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	5.8
50	emb\|BX511024.4\| Zebrafish DNA sequence from clone DKEY-15F12 in ...	40	5.8
51	gb\|AC112265.5\| Mus musculus BAC clone RP23-421N20 from 10, compl...	40	5.8
52	gb\|U60598.1\|OAU60598 Ovis aries 7.5 kDa bactinecin precursor (Ba...	40	5.8
53	gb\|L46852.1\|SHPBAC75R Ovis aries BAC7.5 mRNA, complete cds	40	5.8
54	gb\|AY495433.1\| Sporothrix inflata strain CMW12537 18S ribosomal ...	40	5.8

>ref|XM_483407.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1138

 Score =  218 bits (110), Expect = 1e-53
 Identities = 221/258 (85%)
 Strand = Plus / Plus

                                                                       
Query: 169 gatggatgagtgggttcgccaggccgaggcgtgggcgggccaggccgagcgctggatccg 228
           |||||| |||||||||||||||||||||| ||||| ||| || |||||| | ||||||||
Sbjct: 179 gatggacgagtgggttcgccaggccgaggtgtgggtgggacaagccgagaggtggatccg 238

                                                                       
Query: 229 ccagcagcccccggagcagatttacgtcgccgtcgccgtgatagccgtcacaattctggt 288
            |||||||| || |||||| |||||||||||||||| ||| | ||||| ||  ||||| |
Sbjct: 239 gcagcagcctcccgagcaggtttacgtcgccgtcgcggtggtcgccgtgacggttctgtt 298

                                                                       
Query: 289 gctgcttgcagcttcttgtctgaaatcatcaaaatcaaacaccattgtgctatctggcct 348
           |||| | |||| ||| || |||||||| || ||| |||||||||| ||||||||||| ||
Sbjct: 299 gctggtcgcagtttcgtgcctgaaatcctcgaaagcaaacaccatagtgctatctgggct 358

                                                                       
Query: 349 aagtggaagtggtaaaactattcttttctaccagcttcgtgatggatcatctcatcaagg 408
            ||||| ||||| ||||||||||| |||||||||||||| ||||||||| | ||||||||
Sbjct: 359 cagtggtagtggcaaaactattctcttctaccagcttcgggatggatcaacacatcaagg 418

                             
Query: 409 aactgtgacatcgatgga 426
           ||||||||| || |||||
Sbjct: 419 aactgtgacttcaatgga 436

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>dbj|AK067169.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013098B11, full
           insert sequence
          Length = 1138

 Score =  218 bits (110), Expect = 1e-53
 Identities = 221/258 (85%)
 Strand = Plus / Plus

                                                                       
Query: 169 gatggatgagtgggttcgccaggccgaggcgtgggcgggccaggccgagcgctggatccg 228
           |||||| |||||||||||||||||||||| ||||| ||| || |||||| | ||||||||
Sbjct: 179 gatggacgagtgggttcgccaggccgaggtgtgggtgggacaagccgagaggtggatccg 238

                                                                       
Query: 229 ccagcagcccccggagcagatttacgtcgccgtcgccgtgatagccgtcacaattctggt 288
            |||||||| || |||||| |||||||||||||||| ||| | ||||| ||  ||||| |
Sbjct: 239 gcagcagcctcccgagcaggtttacgtcgccgtcgcggtggtcgccgtgacggttctgtt 298

                                                                       
Query: 289 gctgcttgcagcttcttgtctgaaatcatcaaaatcaaacaccattgtgctatctggcct 348
           |||| | |||| ||| || |||||||| || ||| |||||||||| ||||||||||| ||
Sbjct: 299 gctggtcgcagtttcgtgcctgaaatcctcgaaagcaaacaccatagtgctatctgggct 358

                                                                       
Query: 349 aagtggaagtggtaaaactattcttttctaccagcttcgtgatggatcatctcatcaagg 408
            ||||| ||||| ||||||||||| |||||||||||||| ||||||||| | ||||||||
Sbjct: 359 cagtggtagtggcaaaactattctcttctaccagcttcgggatggatcaacacatcaagg 418

                             
Query: 409 aactgtgacatcgatgga 426
           ||||||||| || |||||
Sbjct: 419 aactgtgacttcaatgga 436

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>gb|BT016562.1| Zea mays clone Contig395 mRNA sequence
          Length = 1353

 Score =  168 bits (85), Expect = 9e-39
 Identities = 214/257 (83%)
 Strand = Plus / Plus

                                                                       
Query: 170 atggatgagtgggttcgccaggccgaggcgtgggcgggccaggccgagcgctggatccgc 229
           ||||| |||||| ||||||| ||||||| ||||| | ||||  ||||| |||||||||||
Sbjct: 253 atggacgagtggattcgccaagccgaggtgtgggtgcgccaatccgagagctggatccgc 312

                                                                       
Query: 230 cagcagcccccggagcagatttacgtcgccgtcgccgtgatagccgtcacaattctggtg 289
           |||||||||||||||||||| || ||||| | | | ||| | ||||||||||| ||| ||
Sbjct: 313 cagcagcccccggagcagatctatgtcgcggccacggtggtcgccgtcacaatcctgctg 372

                                                                       
Query: 290 ctgcttgcagcttcttgtctgaaatcatcaaaatcaaacaccattgtgctatctggccta 349
           ||  | | ||| |||| ||||||||| || ||| ||| |||||| |||||||| || || 
Sbjct: 373 cttatcgtagcatcttatctgaaatcctctaaaccaagcaccatagtgctatccgggctc 432

                                                                       
Query: 350 agtggaagtggtaaaactattcttttctaccagcttcgtgatggatcatctcatcaagga 409
           ||||| ||||| ||||| | | |||||||||||||||| || |||||||| |||||||||
Sbjct: 433 agtggcagtggcaaaaccactattttctaccagcttcgggacggatcatcacatcaagga 492

                            
Query: 410 actgtgacatcgatgga 426
           |||||||| || |||||
Sbjct: 493 actgtgacttcaatgga 509

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>gb|AY104002.1| Zea mays PCO129304 mRNA sequence
          Length = 1319

 Score =  168 bits (85), Expect = 9e-39
 Identities = 214/257 (83%)
 Strand = Plus / Plus

                                                                       
Query: 170 atggatgagtgggttcgccaggccgaggcgtgggcgggccaggccgagcgctggatccgc 229
           ||||| |||||| ||||||| ||||||| ||||| | ||||  ||||| |||||||||||
Sbjct: 257 atggacgagtggattcgccaagccgaggtgtgggtgcgccaatccgagagctggatccgc 316

                                                                       
Query: 230 cagcagcccccggagcagatttacgtcgccgtcgccgtgatagccgtcacaattctggtg 289
           |||||||||||||||||||| || ||||| | | | ||| | ||||||||||| ||| ||
Sbjct: 317 cagcagcccccggagcagatctatgtcgcggccacggtggtcgccgtcacaatcctgctg 376

                                                                       
Query: 290 ctgcttgcagcttcttgtctgaaatcatcaaaatcaaacaccattgtgctatctggccta 349
           ||  | | ||| |||| ||||||||| || ||| ||| |||||| |||||||| || || 
Sbjct: 377 cttatcgtagcatcttatctgaaatcctctaaaccaagcaccatagtgctatccgggctc 436

                                                                       
Query: 350 agtggaagtggtaaaactattcttttctaccagcttcgtgatggatcatctcatcaagga 409
           ||||| ||||| ||||| | | |||||||||||||||| || |||||||| |||||||||
Sbjct: 437 agtggcagtggcaaaaccactattttctaccagcttcgggacggatcatcacatcaagga 496

                            
Query: 410 actgtgacatcgatgga 426
           |||||||| || |||||
Sbjct: 497 actgtgacttcaatgga 513

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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score =  103 bits (52), Expect = 5e-19
 Identities = 85/96 (88%)
 Strand = Plus / Minus

                                                                            
Query: 169      gatggatgagtgggttcgccaggccgaggcgtgggcgggccaggccgagcgctggatccg 228
                |||||| |||||||||||||||||||||| ||||| ||| || |||||| | ||||||||
Sbjct: 26042138 gatggacgagtgggttcgccaggccgaggtgtgggtgggacaagccgagaggtggatccg 26042079

                                                    
Query: 229      ccagcagcccccggagcagatttacgtcgccgtcgc 264
                 |||||||| || |||||| ||||||||||||||||
Sbjct: 26042078 gcagcagcctcccgagcaggtttacgtcgccgtcgc 26042043



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 66/75 (88%)
 Strand = Plus / Minus

                                                                            
Query: 308      ctgaaatcatcaaaatcaaacaccattgtgctatctggcctaagtggaagtggtaaaact 367
                |||||||| || ||| |||||||||| ||||||||||| || ||||| ||||| ||||||
Sbjct: 26041412 ctgaaatcctcgaaagcaaacaccatagtgctatctgggctcagtggtagtggcaaaact 26041353

                               
Query: 368      attcttttctaccag 382
                ||||| |||||||||
Sbjct: 26041352 attctcttctaccag 26041338



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 41/46 (89%)
 Strand = Plus / Minus

                                                              
Query: 381      agcttcgtgatggatcatctcatcaaggaactgtgacatcgatgga 426
                ||||||| ||||||||| | ||||||||||||||||| || |||||
Sbjct: 26040895 agcttcgggatggatcaacacatcaaggaactgtgacttcaatgga 26040850

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>dbj|AP003887.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1186_G01
          Length = 112077

 Score =  103 bits (52), Expect = 5e-19
 Identities = 85/96 (88%)
 Strand = Plus / Minus

                                                                         
Query: 169   gatggatgagtgggttcgccaggccgaggcgtgggcgggccaggccgagcgctggatccg 228
             |||||| |||||||||||||||||||||| ||||| ||| || |||||| | ||||||||
Sbjct: 77699 gatggacgagtgggttcgccaggccgaggtgtgggtgggacaagccgagaggtggatccg 77640

                                                 
Query: 229   ccagcagcccccggagcagatttacgtcgccgtcgc 264
              |||||||| || |||||| ||||||||||||||||
Sbjct: 77639 gcagcagcctcccgagcaggtttacgtcgccgtcgc 77604



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 66/75 (88%)
 Strand = Plus / Minus

                                                                         
Query: 308   ctgaaatcatcaaaatcaaacaccattgtgctatctggcctaagtggaagtggtaaaact 367
             |||||||| || ||| |||||||||| ||||||||||| || ||||| ||||| ||||||
Sbjct: 76973 ctgaaatcctcgaaagcaaacaccatagtgctatctgggctcagtggtagtggcaaaact 76914

                            
Query: 368   attcttttctaccag 382
             ||||| |||||||||
Sbjct: 76913 attctcttctaccag 76899



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 41/46 (89%)
 Strand = Plus / Minus

                                                           
Query: 381   agcttcgtgatggatcatctcatcaaggaactgtgacatcgatgga 426
             ||||||| ||||||||| | ||||||||||||||||| || |||||
Sbjct: 76456 agcttcgggatggatcaacacatcaaggaactgtgacttcaatgga 76411

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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 72/83 (86%)
 Strand = Plus / Minus

                                                                            
Query: 217      gcgctggatccgccagcagcccccggagcagatttacgtcgccgtcgccgtgatagccgt 276
                |||||||||||  ||||||||||| ||||||||||||||||| ||||| ||||| |||||
Sbjct: 15590035 gcgctggatccatcagcagccccctgagcagatttacgtcgcggtcgcggtgattgccgt 15589976

                                       
Query: 277      cacaattctggtgctgcttgcag 299
                 || ||| || ||||||| ||||
Sbjct: 15589975 gacgattgtgttgctgctagcag 15589953



 Score = 48.1 bits (24), Expect = 0.024
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                    
Query: 381      agcttcgtgatggatcatctcatcaaggaactgtga 416
                ||||||| ||||||| ||| ||||||||||||||||
Sbjct: 15578389 agcttcgggatggataatcacatcaaggaactgtga 15578354

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>dbj|AP003528.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0633D04
          Length = 159636

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 72/83 (86%)
 Strand = Plus / Minus

                                                                         
Query: 217   gcgctggatccgccagcagcccccggagcagatttacgtcgccgtcgccgtgatagccgt 276
             |||||||||||  ||||||||||| ||||||||||||||||| ||||| ||||| |||||
Sbjct: 79368 gcgctggatccatcagcagccccctgagcagatttacgtcgcggtcgcggtgattgccgt 79309

                                    
Query: 277   cacaattctggtgctgcttgcag 299
              || ||| || ||||||| ||||
Sbjct: 79308 gacgattgtgttgctgctagcag 79286



 Score = 48.1 bits (24), Expect = 0.024
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                 
Query: 381   agcttcgtgatggatcatctcatcaaggaactgtga 416
             ||||||| ||||||| ||| ||||||||||||||||
Sbjct: 67722 agcttcgggatggataatcacatcaaggaactgtga 67687

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>ref|NM_127433.2| Arabidopsis thaliana signal recognition particle binding AT2G18770
           mRNA, complete cds
          Length = 1098

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 54/65 (83%)
 Strand = Plus / Plus

                                                                       
Query: 341 tctggcctaagtggaagtggtaaaactattcttttctaccagcttcgtgatggatcatct 400
           ||||| |||||||||||||| |||||  |||| ||||| || || || |||||||| || 
Sbjct: 296 tctgggctaagtggaagtggcaaaacagttctcttctatcaactacgagatggatcttcc 355

                
Query: 401 catca 405
           |||||
Sbjct: 356 catca 360

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>gb|AY735577.1| Arabidopsis thaliana hypothetical protein AT2G18770 mRNA, complete
           cds
          Length = 1119

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 54/65 (83%)
 Strand = Plus / Plus

                                                                       
Query: 341 tctggcctaagtggaagtggtaaaactattcttttctaccagcttcgtgatggatcatct 400
           ||||| |||||||||||||| |||||  |||| ||||| || || || |||||||| || 
Sbjct: 296 tctgggctaagtggaagtggcaaaacagttctcttctatcaactacgagatggatcttcc 355

                
Query: 401 catca 405
           |||||
Sbjct: 356 catca 360

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>emb|CR749461.1| Homo sapiens mRNA; cDNA DKFZp779I0829 (from clone DKFZp779I0829)
          Length = 5689

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 281  attctggtgctgcttgcagct 301
            |||||||||||||||||||||
Sbjct: 2616 attctggtgctgcttgcagct 2636

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>dbj|AK097183.1| Homo sapiens cDNA FLJ39864 fis, clone SPLEN2015258
          Length = 3617

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 281  attctggtgctgcttgcagct 301
            |||||||||||||||||||||
Sbjct: 1271 attctggtgctgcttgcagct 1291

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>ref|XM_625969.1| Cryptosporidium parvum Iowa II hypothetical protein (cgd5_40),
            partial mRNA
          Length = 5655

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 37   ccttcttcgcctccatctcctccgc 61
            ||||||||||| |||||||||||||
Sbjct: 4306 ccttcttcgccaccatctcctccgc 4330

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>gb|AY085237.1| Arabidopsis thaliana clone 14084 mRNA, complete sequence
          Length = 998

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 54/65 (83%)
 Strand = Plus / Plus

                                                                       
Query: 341 tctggcctaagtggaagtggtaaaactattcttttctaccagcttcgtgatggatcatct 400
           ||||| |||||||||||||| |||||  |||| ||||| || || || |||||||| || 
Sbjct: 297 tctgggctaagtggaagtggcaaaacagttctcttctatcaactacgagatggatcttcc 356

                
Query: 401 catca 405
           |||||
Sbjct: 357 catca 361

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>gb|AY924743.1| Arabidopsis thaliana hypothetical protein (At2g18770) mRNA,
           complete cds
          Length = 783

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 54/65 (83%)
 Strand = Plus / Plus

                                                                       
Query: 341 tctggcctaagtggaagtggtaaaactattcttttctaccagcttcgtgatggatcatct 400
           ||||| |||||||||||||| |||||  |||| ||||| || || || |||||||| || 
Sbjct: 181 tctgggctaagtggaagtggcaaaacagttctcttctatcaactacgagatggatcttcc 240

                
Query: 401 catca 405
           |||||
Sbjct: 241 catca 245

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>gb|AC008429.6| Homo sapiens chromosome 5 clone CTC-308K20, complete sequence
          Length = 159423

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 281   attctggtgctgcttgcagct 301
             |||||||||||||||||||||
Sbjct: 48572 attctggtgctgcttgcagct 48592

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>ref|NM_130941.2| Danio rerio pl10 (pl10), mRNA
          Length = 4430

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 121  ggcgccaccgccgctcgctc 140
            ||||||||||||||||||||
Sbjct: 3292 ggcgccaccgccgctcgctc 3273

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>ref|XM_513348.1| PREDICTED: Pan troglodytes LOC456786 (LOC456786), mRNA
          Length = 1050

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 138 ctcccctcgccctccacgcg 157
           ||||||||||||||||||||
Sbjct: 664 ctcccctcgccctccacgcg 645

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>ref|NM_172419.1| Mus musculus RIKEN cDNA 9030612E09 gene (9030612E09Rik), mRNA
          Length = 1860

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 226 ccgccagcagcccccggagc 245
           ||||||||||||||||||||
Sbjct: 39  ccgccagcagcccccggagc 20

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>gb|AC092779.5| Oryza sativa chromosome 3 BAC OSJNBb0024N19 genomic sequence, complete
             sequence
          Length = 121849

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 120   cggcgccaccgccgctcgct 139
             ||||||||||||||||||||
Sbjct: 49567 cggcgccaccgccgctcgct 49548

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>ref|XM_591750.2| PREDICTED: Bos taurus similar to kelch-like, transcript variant 1
           (LOC540134), mRNA
          Length = 2874

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 228 gccagcagcccccggagcag 247
           ||||||||||||||||||||
Sbjct: 484 gccagcagcccccggagcag 465

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>ref|XM_867128.1| PREDICTED: Bos taurus similar to kelch-like, transcript variant 3
           (LOC540134), mRNA
          Length = 2982

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 228 gccagcagcccccggagcag 247
           ||||||||||||||||||||
Sbjct: 592 gccagcagcccccggagcag 573

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>gb|BT025359.1| Bos taurus kelch-like 22 (Drosophila) (KLHL22), NotI truncated,
           mRNA, incomplete 3' cds
          Length = 1790

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 228 gccagcagcccccggagcag 247
           ||||||||||||||||||||
Sbjct: 561 gccagcagcccccggagcag 542

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>gb|BC059794.1| Danio rerio pl10, mRNA (cDNA clone MGC:65735 IMAGE:6790263), complete
            cds
          Length = 4430

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 121  ggcgccaccgccgctcgctc 140
            ||||||||||||||||||||
Sbjct: 3292 ggcgccaccgccgctcgctc 3273

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>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome
          Length = 3696649

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 191     gccgaggcgtgggcgggccaggccgagc 218
               |||||||| | |||||||||||||||||
Sbjct: 1455505 gccgaggcatcggcgggccaggccgagc 1455532



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 115     gcccccggcgccaccgccgc 134
               ||||||||||||||||||||
Sbjct: 1164098 gcccccggcgccaccgccgc 1164117

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>gb|AC140482.2| Mus musculus BAC clone RP24-133E1 from chromosome 10, complete
           sequence
          Length = 154925

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 226 ccgccagcagcccccggagc 245
           ||||||||||||||||||||
Sbjct: 751 ccgccagcagcccccggagc 732

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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 120      cggcgccaccgccgctcgct 139
                ||||||||||||||||||||
Sbjct: 27129324 cggcgccaccgccgctcgct 27129343

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>emb|CR388040.5| Zebrafish DNA sequence from clone CH211-170D12 in linkage group 2,
             complete sequence
          Length = 53530

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 348   taagtggaagtggtaaaact 367
             ||||||||||||||||||||
Sbjct: 16568 taagtggaagtggtaaaact 16587

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>ref|XM_759430.1| Theileria parva strain Muguga chromosome 4 DNA helicase (TP04_0886)
            partial mRNA
          Length = 2826

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 310  gaaatcatcaaaatcaaaca 329
            ||||||||||||||||||||
Sbjct: 1410 gaaatcatcaaaatcaaaca 1391

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>gb|AC112990.7| Mus musculus chromosome 19, clone RP24-317E20, complete sequence
          Length = 183322

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 45    gcctccatctcctccgctgt 64
             ||||||||||||||||||||
Sbjct: 95672 gcctccatctcctccgctgt 95653

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>gb|AC110540.7| Mus musculus chromosome 3, clone RP23-105B8, complete sequence
          Length = 232416

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 314    tcatcaaaatcaaacaccattgtg 337
              ||||||||||||||||| ||||||
Sbjct: 192633 tcatcaaaatcaaacactattgtg 192656

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>emb|AL663070.15| Human DNA sequence from clone RP3-342P20 on chromosome 1 Contains the
             gene for a novel protein (FLJ90702, FLJ14997 and
             FLJ35904), a ribosomal protein S2 (RPS2) pseudogene and
             two CpG islands, complete sequence
          Length = 115043

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 138   ctcccctcgccctccacgcg 157
             ||||||||||||||||||||
Sbjct: 31455 ctcccctcgccctccacgcg 31436

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>emb|AL031778.1|HS34B21 Human DNA sequence from clone RP1-34B21 on chromosome 6p12.1-21.1
              Contains part of a novel gene, the gene for a novel BZRP
              (peripheral benzodiazapine receptor (MBR,PBR, PBKS, IBP,
              Isoquinoline-binding protein)) LIKE protein, the APOBEC2
              gene for apolipoprotein B mRNA editing enzyme (catalytic
              polypeptide-like 2), a novel gene and the NFYA gene for
              nuclear transcription factor Y, alpha (CCAAT-Binding
              transcription factor subunit B, CBF-B, CAAT-Box DNA binding
              protein subunit A), complete sequence
          Length = 154394

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 192    ccgaggcgtgggcgggccag 211
              ||||||||||||||||||||
Sbjct: 119313 ccgaggcgtgggcgggccag 119294

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>ref|XM_965363.1| PREDICTED: Tribolium castaneum similar to CG5422-PB, isoform B
            (LOC659024), mRNA
          Length = 1814

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 115  gcccccggcgccaccgccgc 134
            ||||||||||||||||||||
Sbjct: 1082 gcccccggcgccaccgccgc 1063

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>emb|AJ243125.1|CHI243125 Capra hircus mRNA for Bac7.5 protein
          Length = 805

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 228 gccagcagcccccggagcag 247
           ||||||||||||||||||||
Sbjct: 266 gccagcagcccccggagcag 285

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>gb|BC069771.1| Homo sapiens cDNA clone IMAGE:7262645, with apparent retained
           intron
          Length = 1659

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 138 ctcccctcgccctccacgcg 157
           ||||||||||||||||||||
Sbjct: 230 ctcccctcgccctccacgcg 211

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>gb|BC069694.1| Homo sapiens cDNA clone IMAGE:7262633, with apparent retained
           intron
          Length = 1660

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 138 ctcccctcgccctccacgcg 157
           ||||||||||||||||||||
Sbjct: 230 ctcccctcgccctccacgcg 211

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>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 154     cgcgccggtcacggcgatgg 173
               ||||||||||||||||||||
Sbjct: 2852081 cgcgccggtcacggcgatgg 2852100

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>dbj|AK027396.1| Homo sapiens cDNA FLJ14490 fis, clone MAMMA1002886
          Length = 1768

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 138 ctcccctcgccctccacgcg 157
           ||||||||||||||||||||
Sbjct: 275 ctcccctcgccctccacgcg 256

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>ref|XM_941481.1| PREDICTED: Homo sapiens hypothetical protein LOC652144 (LOC652144),
           mRNA
          Length = 1152

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 192 ccgaggcgtgggcgggccag 211
           ||||||||||||||||||||
Sbjct: 73  ccgaggcgtgggcgggccag 92

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>dbj|AK029173.1| Mus musculus 0 day neonate head cDNA, RIKEN full-length enriched
           library, clone:4831404P12 product:hypothetical protein,
           full insert sequence
          Length = 1860

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 226 ccgccagcagcccccggagc 245
           ||||||||||||||||||||
Sbjct: 39  ccgccagcagcccccggagc 20

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>dbj|AK018547.1| Mus musculus adult male colon cDNA, RIKEN full-length enriched
           library, clone:9030612E09 product:hypothetical protein,
           full insert sequence
          Length = 1764

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 226 ccgccagcagcccccggagc 245
           ||||||||||||||||||||
Sbjct: 44  ccgccagcagcccccggagc 25

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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 120      cggcgccaccgccgctcgct 139
                ||||||||||||||||||||
Sbjct: 27220647 cggcgccaccgccgctcgct 27220666

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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 218      cgctggatccgccagcagcc 237
                ||||||||||||||||||||
Sbjct: 10562381 cgctggatccgccagcagcc 10562400

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>gb|AC021171.6| Homo sapiens BAC clone RP11-674I16 from 2, complete sequence
          Length = 162609

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 309    tgaaatcatcaaaatcaaac 328
              ||||||||||||||||||||
Sbjct: 105451 tgaaatcatcaaaatcaaac 105432

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>gb|AC015651.18|AC015651 Homo sapiens chromosome 17, clone RP11-55A13, complete sequence
          Length = 191583

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 196    ggcgtgggcgggccaggccgagcg 219
              ||||||| ||||||||||||||||
Sbjct: 100787 ggcgtggccgggccaggccgagcg 100810

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>ref|NM_001009301.1| Ovis aries BAC7.5 protein (BAC7.5), mRNA
          Length = 808

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 228 gccagcagcccccggagcag 247
           ||||||||||||||||||||
Sbjct: 266 gccagcagcccccggagcag 285

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>gb|AC091312.8| Mus musculus chromosome 3, clone RP23-333N1, complete sequence
          Length = 199026

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 314    tcatcaaaatcaaacaccattgtg 337
              ||||||||||||||||| ||||||
Sbjct: 133247 tcatcaaaatcaaacactattgtg 133224

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>dbj|AP005694.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0063E14
          Length = 174415

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 218    cgctggatccgccagcagcc 237
              ||||||||||||||||||||
Sbjct: 143549 cgctggatccgccagcagcc 143568

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>emb|BX511024.4| Zebrafish DNA sequence from clone DKEY-15F12 in linkage group 20,
             complete sequence
          Length = 66927

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 56    ctccgctgtcccactggcct 75
             ||||||||||||||||||||
Sbjct: 18207 ctccgctgtcccactggcct 18226

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>gb|AC112265.5| Mus musculus BAC clone RP23-421N20 from 10, complete sequence
          Length = 203204

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 226  ccgccagcagcccccggagc 245
            ||||||||||||||||||||
Sbjct: 9793 ccgccagcagcccccggagc 9812

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>gb|U60598.1|OAU60598 Ovis aries 7.5 kDa bactinecin precursor (Bac7.5) gene, partial cds
          Length = 1908

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 228 gccagcagcccccggagcag 247
           ||||||||||||||||||||
Sbjct: 938 gccagcagcccccggagcag 957

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>gb|L46852.1|SHPBAC75R Ovis aries BAC7.5 mRNA, complete cds
          Length = 808

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 228 gccagcagcccccggagcag 247
           ||||||||||||||||||||
Sbjct: 266 gccagcagcccccggagcag 285

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>gb|AY495433.1| Sporothrix inflata strain CMW12537 18S ribosomal RNA gene, partial
           sequence; internal transcribed spacer 1, 5.8S ribosomal
           RNA gene, and internal transcribed spacer 2, complete
           sequence; and 28S ribosomal RNA gene, partial sequence
          Length = 533

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 115 gcccccggcgccaccgccgc 134
           ||||||||||||||||||||
Sbjct: 75  gcccccggcgccaccgccgc 94


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,594,996
Number of Sequences: 3902068
Number of extensions: 3594996
Number of successful extensions: 94060
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 93489
Number of HSP's gapped (non-prelim): 571
length of query: 432
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 410
effective length of database: 17,147,199,772
effective search space: 7030351906520
effective search space used: 7030351906520
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result