Clone Information

BLAST Search Result

Clone Name	bart51g08
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	VIP1_SCHPO (P87216) Protein vip1	44	2e-04
2	SFR11_HUMAN (Q05519) Splicing factor arginine/serine-rich 11 (Ar...	44	2e-04
3	MODU_DROME (P13469) DNA-binding protein modulo	42	0.001
4	NOP12_YARLI (Q6C2Q7) Nucleolar protein 12	39	0.006
5	RSP7_CAEEL (O01159) Probable splicing factor, arginine/serine-ri...	36	0.039
6	NOP12_KLULA (Q6CKV6) Nucleolar protein 12	35	0.067
7	MRD1_CANAL (Q5AJS6) Multiple RNA-binding domain-containing prote...	35	0.067
8	GAR2_SCHPO (P41891) Protein gar2	35	0.067
9	MRD1_KLULA (Q6CQR6) Multiple RNA-binding domain-containing prote...	35	0.067
10	NOP12_YEAST (Q08208) Nucleolar protein 12	35	0.067
11	RSP31_ARATH (P92964) Arginine/serine-rich splicing factor RSP31	35	0.088
12	SFRS6_HUMAN (Q13247) Splicing factor, arginine/serine-rich 6 (Pr...	35	0.088
13	NOP12_SCHPO (O13741) Nucleolar protein 12	34	0.15
14	SFRS4_MOUSE (Q8VE97) Splicing factor, arginine/serine-rich 4	34	0.20
15	SFRS4_HUMAN (Q08170) Splicing factor, arginine/serine-rich 4 (Pr...	34	0.20
16	RBM34_MOUSE (Q8C5L7) RNA-binding protein 34 (RNA-binding motif p...	34	0.20
17	RSD1_SCHPO (O13845) RNA-binding protein rsd1	33	0.26
18	RBM34_HUMAN (P42696) RNA-binding protein 34 (RNA-binding motif p...	33	0.33
19	PABP2_MOUSE (Q8CCS6) Polyadenylate-binding protein 2 (Poly(A)-bi...	33	0.33
20	PABP2_HUMAN (Q86U42) Polyadenylate-binding protein 2 (Poly(A)-bi...	33	0.33
21	PABP2_BOVIN (Q28165) Polyadenylate-binding protein 2 (Poly(A)-bi...	33	0.33
22	RSP3_CAEEL (Q9NEW6) Probable splicing factor, arginine/serine-ri...	33	0.33
23	RSP41_ARATH (P92966) Arginine/serine-rich splicing factor RSP41	33	0.44
24	RBM8A_MOUSE (Q9CWZ3) RNA-binding protein 8A (RNA-binding motif p...	33	0.44
25	RBM8A_HUMAN (Q9Y5S9) RNA-binding protein 8A (RNA-binding motif p...	33	0.44
26	RBM34_RAT (Q5M9F1) RNA-binding protein 34 (RNA-binding motif pro...	33	0.44
27	PAB2_SCHPO (O14327) Polyadenylate-binding protein 2 (Poly(A)-bin...	32	0.57
28	RSP40_ARATH (P92965) Arginine/serine-rich splicing factor RSP40	32	0.74
29	SFRS9_RAT (Q5PPI1) Splicing factor, arginine/serine-rich 9	31	1.3
30	SFRS9_HUMAN (Q13242) Splicing factor, arginine/serine-rich 9 (Pr...	31	1.3
31	TADBP_HUMAN (Q13148) TAR DNA-binding protein 43 (TDP-43)	31	1.3
32	NOP12_CANGA (Q6FUS6) Nucleolar protein 12	31	1.7
33	ITB4_RAT (Q64632) Integrin beta-4 precursor (GP150) (CD104 antigen)	31	1.7
34	SFRS9_MOUSE (Q9D0B0) Splicing factor, arginine/serine-rich 9	31	1.7
35	SFRS5_RAT (Q09167) Splicing factor, arginine/serine-rich 5 (Pre-...	30	2.2
36	SFRS5_MOUSE (O35326) Splicing factor, arginine/serine-rich 5 (Pr...	30	2.2
37	NCBP2_MOUSE (Q9CQ49) Nuclear cap-binding protein subunit 2 (20 k...	30	2.2
38	NCBP2_HUMAN (P52298) Nuclear cap-binding protein subunit 2 (20 k...	30	2.2
39	NCBP2_BOVIN (Q3ZBJ1) Nuclear cap-binding protein subunit 2	30	2.2
40	SFRS5_HUMAN (Q13243) Splicing factor, arginine/serine-rich 5 (Pr...	30	2.2
41	CSTFT_HUMAN (Q9H0L4) Cleavage stimulation factor, 64 kDa subunit...	30	2.8
42	YCQ9_SCHPO (O13674) Hypothetical RNA-binding protein C74.09 in c...	30	2.8
43	CSTFT_MOUSE (Q8C7E9) Cleavage stimulation factor, 64 kDa subunit...	30	2.8
44	TRI42_HUMAN (Q8IWZ5) Tripartite motif protein 42	30	2.8
45	NOP12_GIBZE (Q4IQW0) Nucleolar protein 12	30	2.8
46	SRCH_RABIT (P16230) Sarcoplasmic reticulum histidine-rich calciu...	30	2.8
47	NCBP2_XENLA (P52299) Nuclear cap binding protein subunit 2 (20 k...	30	3.7
48	CSTF2_PONPY (Q5RDA3) Cleavage stimulation factor, 64 kDa subunit...	30	3.7
49	CSTF2_HUMAN (P33240) Cleavage stimulation factor, 64 kDa subunit...	30	3.7
50	CSTF2_BOVIN (Q8HXM1) Cleavage stimulation factor, 64 kDa subunit...	30	3.7
51	CSTF2_MOUSE (Q8BIQ5) Cleavage stimulation factor, 64 kDa subunit...	30	3.7
52	CHP1_SCHPO (Q10103) Chromo domain protein 1	30	3.7
53	SFRS1_PONPY (Q5R7H2) Splicing factor, arginine/serine-rich 1	29	6.3
54	SFRS1_MOUSE (Q6PDM2) Splicing factor, arginine/serine-rich 1	29	6.3
55	SFRS1_HUMAN (Q07955) Splicing factor, arginine/serine-rich 1 (pr...	29	6.3
56	ARI2_MOUSE (Q9Z1K6) Protein ariadne-2 homolog (ARI-2) (Triad1 pr...	29	6.3
57	SFRS1_CHICK (Q5ZML3) Splicing factor, arginine/serine-rich 1	29	6.3
58	SFRS1_XENTR (Q6DII2) Splicing factor, arginine/serine-rich 1	29	6.3
59	ARI2_HUMAN (O95376) Protein ariadne-2 homolog (ARI-2) (Triad1 pr...	29	6.3
60	TBA_AJECA (P53371) Tubulin alpha chain (Fragment)	29	6.3
61	SFRS1_BRARE (Q6NYA0) Splicing factor, arginine/serine-rich 1	28	8.2
62	SF1L1_BRARE (Q7SXP4) Splicing factor, arginine/serine-rich 1-lik...	28	8.2
63	ARI2_DROME (O76924) Protein ariadne-2 (Ari-2)	28	8.2
64	GLTB_PORPU (P51375) Ferredoxin-dependent glutamate synthase (EC ...	28	8.2
65	TBA1_EMENI (P24633) Tubulin alpha-1 chain	28	8.2

>VIP1_SCHPO (P87216) Protein vip1|
          Length = 257

 Score = 43.9 bits (102), Expect = 2e-04
 Identities = 23/61 (37%), Positives = 35/61 (57%)
 Frame = +1

Query: 196 VKVTNVSLSATEQDIKEFFSFSGDIEHVDMKSGDEWSQVAYVTFKDAQGAETALLLSGAT 375
           V VTN+S   TE+ I +FFSF G + ++  +   E +Q A + F+     +TALLL  A 
Sbjct: 5   VIVTNISPEVTEKQISDFFSFCGKVSNISTEKSGE-TQTAKIQFERPSATKTALLLQDAL 63

Query: 376 I 378
           +
Sbjct: 64  L 64

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>SFR11_HUMAN (Q05519) Splicing factor arginine/serine-rich 11 (Arginine-rich 54|
           kDa nuclear protein) (p54)
          Length = 484

 Score = 43.9 bits (102), Expect = 2e-04
 Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 5/87 (5%)
 Frame = +1

Query: 196 VKVTNVSLSATEQDIKEFFSFSGDIEHVDMKSGDE-----WSQVAYVTFKDAQGAETALL 360
           ++VTNVS SA+ + ++  F F G I+ + +   D+      S+V +V F D   A  A  
Sbjct: 35  IQVTNVSPSASSEQMRTLFGFLGKIDELRLFPPDDSPLPVSSRVCFVKFHDPDSAVVAQH 94

Query: 361 LSGATIVDLSVIIAPAPEYQPPVTASA 441
           L+    VD ++I+ P  E   P  A A
Sbjct: 95  LTNTVFVDRALIVVPYAEGVIPDEAKA 121

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>MODU_DROME (P13469) DNA-binding protein modulo|
          Length = 542

 Score = 41.6 bits (96), Expect = 0.001
 Identities = 24/72 (33%), Positives = 41/72 (56%)
 Frame = +1

Query: 190 RSVKVTNVSLSATEQDIKEFFSFSGDIEHVDMKSGDEWSQVAYVTFKDAQGAETALLLSG 369
           R++ VTN++  ATE D+++ F+ SG+IE + M       Q A V FKD +G   + L + 
Sbjct: 420 RAILVTNLTSDATEADLRKVFNDSGEIESIIM-----LGQKAVVKFKDDEGFCKSFLANE 474

Query: 370 ATIVDLSVIIAP 405
           + + +  + I P
Sbjct: 475 SIVNNAPIFIEP 486

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>NOP12_YARLI (Q6C2Q7) Nucleolar protein 12|
          Length = 509

 Score = 38.9 bits (89), Expect = 0.006
 Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
 Frame = +1

Query: 190 RSVKVTNVSLSATEQDIKEFFSFSGDIEHVDMKSGDEWSQ---VAYVTFKDAQGAETALL 360
           R V V  +     E+ + E FS  GD+E+V +    + +     AYV FKD    E ALL
Sbjct: 274 RCVFVGALDFEEQEESLWEAFSSCGDVEYVRIVRDPKTNVGKGFAYVQFKDVNSVEQALL 333

Query: 361 LSGATIVDLS 390
           L+G  I +LS
Sbjct: 334 LNGKGINELS 343

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>RSP7_CAEEL (O01159) Probable splicing factor, arginine/serine-rich 7 (p54)|
          Length = 452

 Score = 36.2 bits (82), Expect = 0.039
 Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 6/76 (7%)
 Frame = +1

Query: 202 VTNVSLSATEQDIKEFFSFSGDIEHVDMK------SGDEWSQVAYVTFKDAQGAETALLL 363
           V N+S SAT   I   F++ G I+ + +       + +   + A++ F D +  E A  L
Sbjct: 14  VANISTSATRDHIYNMFNYLGKIQDLKVYPSEGNITANTLLKTAFIKFDDERCVEVAQHL 73

Query: 364 SGATIVDLSVIIAPAP 411
           +   ++D +++  P P
Sbjct: 74  TNTVVIDCAIVCLPYP 89

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>NOP12_KLULA (Q6CKV6) Nucleolar protein 12|
          Length = 524

 Score = 35.4 bits (80), Expect = 0.067
 Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
 Frame = +1

Query: 190 RSVKVTNVSLSATEQDIKEFFSFSGDIEHVDMKSGDEWSQ---VAYVTFKDAQGAETALL 360
           RSV V N+     E+ + + F   GDIE+V +    + +     AYV FKD Q    ALL
Sbjct: 359 RSVFVGNLDFEEVEESLWKHFEPCGDIEYVRIIRDSKTNMGKGFAYVQFKDFQSVSKALL 418

Query: 361 L 363
           L
Sbjct: 419 L 419

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>MRD1_CANAL (Q5AJS6) Multiple RNA-binding domain-containing protein 1|
          Length = 841

 Score = 35.4 bits (80), Expect = 0.067
 Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
 Frame = +1

Query: 226 TEQDIKEFFSFSGDIEHVDM--KSGDEWSQVAYVTFKDAQGAETALLLSGATIVDLSVI 396
           TE+ ++EFFS  GD+  V +  K   E  + A++ +K A  AE A+     + +D + I
Sbjct: 14  TEEKLREFFSKQGDVTDVKLMKKRNGESRKFAFIGYKSADAAERAVKYFNKSFIDTARI 72

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>GAR2_SCHPO (P41891) Protein gar2|
          Length = 500

 Score = 35.4 bits (80), Expect = 0.067
 Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
 Frame = +1

Query: 193 SVKVTNVSLSATEQDIKEFFSFSGDIEHVDMKSGDEWSQV---AYVTFKDAQGAETALLL 363
           +V V N+S +ATE D+   F   GDI+ + + +  +  ++    YVTF D   A+  + +
Sbjct: 367 TVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVEM 426

Query: 364 SG 369
           +G
Sbjct: 427 NG 428

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>MRD1_KLULA (Q6CQR6) Multiple RNA-binding domain-containing protein 1|
          Length = 878

 Score = 35.4 bits (80), Expect = 0.067
 Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
 Frame = +1

Query: 208 NVSLSATEQDIKEFFSFSGDIEHV----DMKSGDEWSQVAYVTFKDAQGAETALL 360
           N+  +ATE D ++ FS  G++E V    D ++G      AYV FK+A  A TA +
Sbjct: 336 NILYTATEDDFRKLFSPYGELEEVHIAVDTRTGQS-KGFAYVLFKNADNAATAFV 389

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>NOP12_YEAST (Q08208) Nucleolar protein 12|
          Length = 459

 Score = 35.4 bits (80), Expect = 0.067
 Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
 Frame = +1

Query: 190 RSVKVTNVSLSATEQDIKEFFSFSGDIEHVDMKSGDEWSQ---VAYVTFKDAQGAETALL 360
           RS+ V N+     E+ + + F   GDIE+V +    + +     AYV FKD Q    ALL
Sbjct: 279 RSIFVGNLDFEEIEESLWKHFEPCGDIEYVRIIRDSKTNMGKGFAYVQFKDLQSVNKALL 338

Query: 361 LS 366
           L+
Sbjct: 339 LN 340

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>RSP31_ARATH (P92964) Arginine/serine-rich splicing factor RSP31|
          Length = 264

 Score = 35.0 bits (79), Expect = 0.088
 Identities = 20/56 (35%), Positives = 29/56 (51%)
 Frame = +1

Query: 190 RSVKVTNVSLSATEQDIKEFFSFSGDIEHVDMKSGDEWSQVAYVTFKDAQGAETAL 357
           R V V N      + D++  F   G ++ VDMKSG      A+V F+D + AE A+
Sbjct: 2   RPVFVGNFEYETRQSDLERLFDKYGRVDRVDMKSG-----YAFVYFEDERDAEDAI 52

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>SFRS6_HUMAN (Q13247) Splicing factor, arginine/serine-rich 6 (Pre-mRNA-splicing|
           factor SRP55)
          Length = 344

 Score = 35.0 bits (79), Expect = 0.088
 Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
 Frame = +1

Query: 196 VKVTNVSLSATEQDIKEFFSFSGDIEHVDMKSGDEWSQVAYVTFKDAQGAETALL-LSGA 372
           V +  +S +  E+DI+ FFS  G +  VD+K+G       +V F+D++ A+ A+  L+G 
Sbjct: 4   VYIGRLSYNVREKDIQRFFSGYGRLLEVDLKNG-----YGFVEFEDSRDADDAVYELNGK 58

Query: 373 TIVDLSVIIAPA 408
            +    VI+  A
Sbjct: 59  ELCGERVIVEHA 70

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>NOP12_SCHPO (O13741) Nucleolar protein 12|
          Length = 438

 Score = 34.3 bits (77), Expect = 0.15
 Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
 Frame = +1

Query: 190 RSVKVTNVSLSATEQDIKEFFSFSGDIEHVDMKSGDEWSQ---VAYVTFKDAQGAETALL 360
           R V V N++  A E+ +  +F   G I++V +    + +     AY+ FKD  G + ALL
Sbjct: 270 RCVFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVDKALL 329

Query: 361 LS 366
           L+
Sbjct: 330 LN 331

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>SFRS4_MOUSE (Q8VE97) Splicing factor, arginine/serine-rich 4|
          Length = 489

 Score = 33.9 bits (76), Expect = 0.20
 Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
 Frame = +1

Query: 196 VKVTNVSLSATEQDIKEFFSFSGDIEHVDMKSGDEWSQVAYVTFKDAQGAETALL-LSGA 372
           V +  +S  A E+D++ FF   G I  VD+K+G       +V F D + A+ A+  L+G 
Sbjct: 4   VYIGRLSYQARERDVERFFKGYGKILEVDLKNG-----YGFVEFDDLRDADDAVYELNGK 58

Query: 373 TIVDLSVIIAPA 408
            +    VI+  A
Sbjct: 59  DLCGERVIVEHA 70

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>SFRS4_HUMAN (Q08170) Splicing factor, arginine/serine-rich 4 (Pre-mRNA-splicing|
           factor SRP75) (SRP001LB)
          Length = 494

 Score = 33.9 bits (76), Expect = 0.20
 Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
 Frame = +1

Query: 196 VKVTNVSLSATEQDIKEFFSFSGDIEHVDMKSGDEWSQVAYVTFKDAQGAETALL-LSGA 372
           V +  +S  A E+D++ FF   G I  VD+K+G       +V F D + A+ A+  L+G 
Sbjct: 4   VYIGRLSYQARERDVERFFKGYGKILEVDLKNG-----YGFVEFDDLRDADDAVYELNGK 58

Query: 373 TIVDLSVIIAPA 408
            +    VI+  A
Sbjct: 59  DLCGERVIVEHA 70

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>RBM34_MOUSE (Q8C5L7) RNA-binding protein 34 (RNA-binding motif protein 34)|
          Length = 375

 Score = 33.9 bits (76), Expect = 0.20
 Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 20/85 (23%)
 Frame = +1

Query: 190 RSVKVTNVSLSATEQDIKEFFSFSGDIEHVDMKS--------------------GDEWSQ 309
           R+V V N+ ++  ++ +K FF   G +E V  +S                     D+ S 
Sbjct: 189 RTVFVGNLPVTCNKKKLKSFFKEYGQVESVRFRSVMPAEGTLTKKLAAIKRKFHPDQKSI 248

Query: 310 VAYVTFKDAQGAETALLLSGATIVD 384
            AYV FKD   A  AL  +GA I +
Sbjct: 249 NAYVVFKDESAAAKALQRNGAQIAE 273

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>RSD1_SCHPO (O13845) RNA-binding protein rsd1|
          Length = 604

 Score = 33.5 bits (75), Expect = 0.26
 Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
 Frame = +1

Query: 190 RSVKVTNVSLSATEQDIKEFFSFSG---DIEHVDMKSGDEWSQVAYVTFKDAQGAETALL 360
           R+V V+ ++   T +++ +FF  +G   D + V  K       VAYV F      + A+ 
Sbjct: 240 RTVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAAIA 299

Query: 361 LSGATIVDLSVII 399
           LSG  ++ L VI+
Sbjct: 300 LSGKRLLGLPVIV 312



 Score = 32.0 bits (71), Expect = 0.74
 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = +1

Query: 202 VTNVSLSATEQDIKEFFSFSGDIEHVDMKSGDE--WSQVAYVTFKDAQGAETAL 357
           V+N+  + T++D+K  F   GDIE V ++  D+       Y+ +++   A  AL
Sbjct: 344 VSNIHFNLTDEDVKAIFEPFGDIEFVHLQRDDQNRSKGFGYIQYRNPISARNAL 397

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>RBM34_HUMAN (P42696) RNA-binding protein 34 (RNA-binding motif protein 34)|
          Length = 430

 Score = 33.1 bits (74), Expect = 0.33
 Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 20/85 (23%)
 Frame = +1

Query: 190 RSVKVTNVSLSATEQDIKEFFSFSGDIEHVDMKS--------------------GDEWSQ 309
           R+V V N+ ++  ++ +K FF   G IE V  +S                     D+ + 
Sbjct: 185 RTVFVGNLPVTCNKKKLKSFFKEYGQIESVRFRSLIPAEGTLSKKLAAIKRKIHPDQKNI 244

Query: 310 VAYVTFKDAQGAETALLLSGATIVD 384
            AYV FK+   A  AL  +GA I D
Sbjct: 245 NAYVVFKEESAATQALKRNGAQIAD 269

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>PABP2_MOUSE (Q8CCS6) Polyadenylate-binding protein 2 (Poly(A)-binding protein|
           2) (PolyA binding protein II) (PABII)
           (Polyadenylate-binding nuclear protein 1) (Nuclear
           poly(A)-binding protein 1)
          Length = 301

 Score = 33.1 bits (74), Expect = 0.33
 Identities = 20/86 (23%), Positives = 37/86 (43%), Gaps = 3/86 (3%)
 Frame = +1

Query: 190 RSVKVTNVSLSATEQDIKEFFSFSGDIEHVDM---KSGDEWSQVAYVTFKDAQGAETALL 360
           RS+ V NV   AT ++++  F   G +  V +   K        AY+ F D +   T+L 
Sbjct: 167 RSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLA 226

Query: 361 LSGATIVDLSVIIAPAPEYQPPVTAS 438
           L  +      + + P    +P ++ +
Sbjct: 227 LDESLFRGRQIKVIPKRTNRPGISTT 252

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>PABP2_HUMAN (Q86U42) Polyadenylate-binding protein 2 (Poly(A)-binding protein|
           2) (PolyA binding protein II) (PABII)
           (Polyadenylate-binding nuclear protein 1) (Nuclear
           poly(A)-binding protein 1)
          Length = 305

 Score = 33.1 bits (74), Expect = 0.33
 Identities = 20/86 (23%), Positives = 37/86 (43%), Gaps = 3/86 (3%)
 Frame = +1

Query: 190 RSVKVTNVSLSATEQDIKEFFSFSGDIEHVDM---KSGDEWSQVAYVTFKDAQGAETALL 360
           RS+ V NV   AT ++++  F   G +  V +   K        AY+ F D +   T+L 
Sbjct: 171 RSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLA 230

Query: 361 LSGATIVDLSVIIAPAPEYQPPVTAS 438
           L  +      + + P    +P ++ +
Sbjct: 231 LDESLFRGRQIKVIPKRTNRPGISTT 256

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>PABP2_BOVIN (Q28165) Polyadenylate-binding protein 2 (Poly(A)-binding protein|
           2) (PolyA-binding protein II) (PABII)
           (Polyadenylate-binding nuclear protein 1) (Nuclear
           poly(A)-binding protein 1)
          Length = 305

 Score = 33.1 bits (74), Expect = 0.33
 Identities = 20/86 (23%), Positives = 37/86 (43%), Gaps = 3/86 (3%)
 Frame = +1

Query: 190 RSVKVTNVSLSATEQDIKEFFSFSGDIEHVDM---KSGDEWSQVAYVTFKDAQGAETALL 360
           RS+ V NV   AT ++++  F   G +  V +   K        AY+ F D +   T+L 
Sbjct: 171 RSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLA 230

Query: 361 LSGATIVDLSVIIAPAPEYQPPVTAS 438
           L  +      + + P    +P ++ +
Sbjct: 231 LDESLFRGRQIKVIPKRTNRPGISTT 256

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>RSP3_CAEEL (Q9NEW6) Probable splicing factor, arginine/serine-rich 3 (CeSF2)|
           (CeSF2/ASF)
          Length = 258

 Score = 33.1 bits (74), Expect = 0.33
 Identities = 19/56 (33%), Positives = 33/56 (58%)
 Frame = +1

Query: 190 RSVKVTNVSLSATEQDIKEFFSFSGDIEHVDMKSGDEWSQVAYVTFKDAQGAETAL 357
           + V V N+     E+++++ F   G I++VD+KSG      A+V F+D + AE A+
Sbjct: 9   QKVYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSG-RGPAFAFVEFEDHRDAEDAV 63

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>RSP41_ARATH (P92966) Arginine/serine-rich splicing factor RSP41|
          Length = 356

 Score = 32.7 bits (73), Expect = 0.44
 Identities = 18/50 (36%), Positives = 26/50 (52%)
 Frame = +1

Query: 208 NVSLSATEQDIKEFFSFSGDIEHVDMKSGDEWSQVAYVTFKDAQGAETAL 357
           N    A E D++  F   G +E VDMK+G      A+V  +D + AE A+
Sbjct: 8   NFEYDARESDLERLFRKYGKVERVDMKAG-----FAFVYMEDERDAEDAI 52

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>RBM8A_MOUSE (Q9CWZ3) RNA-binding protein 8A (RNA-binding motif protein 8A)|
           (Ribonucleoprotein RBM8A)
          Length = 174

 Score = 32.7 bits (73), Expect = 0.44
 Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 6/58 (10%)
 Frame = +1

Query: 202 VTNVSLSATEQDIKEFFSFSGDIEHV----DMKSG--DEWSQVAYVTFKDAQGAETAL 357
           VT V   ATE+DI + F+  G+I+++    D ++G    ++ V Y T+K+AQ A   L
Sbjct: 77  VTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGL 134

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>RBM8A_HUMAN (Q9Y5S9) RNA-binding protein 8A (RNA-binding motif protein 8A)|
           (Ribonucleoprotein RBM8A) (RNA-binding protein Y14)
           (Binder of OVCA1-1) (BOV-1)
          Length = 174

 Score = 32.7 bits (73), Expect = 0.44
 Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 6/58 (10%)
 Frame = +1

Query: 202 VTNVSLSATEQDIKEFFSFSGDIEHV----DMKSG--DEWSQVAYVTFKDAQGAETAL 357
           VT V   ATE+DI + F+  G+I+++    D ++G    ++ V Y T+K+AQ A   L
Sbjct: 77  VTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGL 134

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>RBM34_RAT (Q5M9F1) RNA-binding protein 34 (RNA-binding motif protein 34)|
          Length = 428

 Score = 32.7 bits (73), Expect = 0.44
 Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 20/85 (23%)
 Frame = +1

Query: 190 RSVKVTNVSLSATEQDIKEFFSFSGDIEHVDMKS--------------------GDEWSQ 309
           R+V V N+ ++  ++ +K FF   G +E V  +S                     D+ S 
Sbjct: 183 RTVFVGNLPVTCNKKKLKSFFKEYGQVESVRFRSVMPAEGTLSKKLAAIKRKFHPDQKSI 242

Query: 310 VAYVTFKDAQGAETALLLSGATIVD 384
            AYV FK+ + A  AL  +GA I +
Sbjct: 243 NAYVVFKEERAAAKALQRNGAQIAE 267

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>PAB2_SCHPO (O14327) Polyadenylate-binding protein 2 (Poly(A)-binding protein|
           2) (Poly(A)-binding protein II) (PABII)
          Length = 166

 Score = 32.3 bits (72), Expect = 0.57
 Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
 Frame = +1

Query: 190 RSVKVTNVSLSATEQDIKEFFSFSGDIEHVDM---KSGDEWSQVAYVTFKDAQGAETALL 360
           +SV V NV  S T ++++  F+  G +  V +   K        AY+ F +      ALL
Sbjct: 55  QSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNALL 114

Query: 361 LSGATIVDLSVIIAP 405
           L+G+ + +  + + P
Sbjct: 115 LNGSMLHERPLKVTP 129

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>RSP40_ARATH (P92965) Arginine/serine-rich splicing factor RSP40|
          Length = 350

 Score = 32.0 bits (71), Expect = 0.74
 Identities = 18/50 (36%), Positives = 26/50 (52%)
 Frame = +1

Query: 208 NVSLSATEQDIKEFFSFSGDIEHVDMKSGDEWSQVAYVTFKDAQGAETAL 357
           N    A E D++  F   G +E VDMK+G      A+V  +D + AE A+
Sbjct: 8   NFEYDAREGDLERLFRKYGKVERVDMKAG-----FAFVYMEDERDAEDAI 52

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>SFRS9_RAT (Q5PPI1) Splicing factor, arginine/serine-rich 9|
          Length = 221

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 15/54 (27%), Positives = 29/54 (53%)
 Frame = +1

Query: 196 VKVTNVSLSATEQDIKEFFSFSGDIEHVDMKSGDEWSQVAYVTFKDAQGAETAL 357
           + V N+     E+D+++ F   G I  +++K+       A+V F+D + AE A+
Sbjct: 16  IYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAI 69

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>SFRS9_HUMAN (Q13242) Splicing factor, arginine/serine-rich 9 (Pre-mRNA-splicing|
           factor SRp30C)
          Length = 221

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 15/54 (27%), Positives = 29/54 (53%)
 Frame = +1

Query: 196 VKVTNVSLSATEQDIKEFFSFSGDIEHVDMKSGDEWSQVAYVTFKDAQGAETAL 357
           + V N+     E+D+++ F   G I  +++K+       A+V F+D + AE A+
Sbjct: 16  IYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAI 69

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>TADBP_HUMAN (Q13148) TAR DNA-binding protein 43 (TDP-43)|
          Length = 414

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
 Frame = +1

Query: 190 RSVKVTNVSLSATEQDIKEFFSFSGDIEHVDMKSGDEWSQVAYVTFKDAQGAETA----L 357
           R V V   +   TE +++EFFS  GD+  +D+     +   A+VTF D Q A++     L
Sbjct: 191 RKVFVGRCTEDMTEDELREFFSQYGDV--MDVFIPKPFRAFAFVTFADDQIAQSLCGEDL 248

Query: 358 LLSGATI 378
           ++ G ++
Sbjct: 249 IIKGISV 255

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>NOP12_CANGA (Q6FUS6) Nucleolar protein 12|
          Length = 396

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
 Frame = +1

Query: 190 RSVKVTNVSLSATEQDIKEFFSFSGDIEHVDMKSGDEWSQ---VAYVTFKDAQGAETALL 360
           RSV V N+     E+ + + F   G IE+V +    + +     AYV F + Q    ALL
Sbjct: 228 RSVFVGNLDFEEDEESLWKHFGACGSIEYVRIVRDPKTNMGKGFAYVQFNELQSVSKALL 287

Query: 361 LS 366
           L+
Sbjct: 288 LN 289

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>ITB4_RAT (Q64632) Integrin beta-4 precursor (GP150) (CD104 antigen)|
          Length = 1807

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = +3

Query: 297 RVVSSCICYL*RCPRSRDCTSSFGRYNS*SLCYHCTCSRVSTARYCLCT 443
           R+ +S IC +  C   ++  S+   Y    +C HC C+   + + C C+
Sbjct: 446 RMDASVICDMCACELQKEVQSARCHYRGDFMCGHCVCNEGWSGKTCNCS 494

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>SFRS9_MOUSE (Q9D0B0) Splicing factor, arginine/serine-rich 9|
          Length = 222

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 15/54 (27%), Positives = 29/54 (53%)
 Frame = +1

Query: 196 VKVTNVSLSATEQDIKEFFSFSGDIEHVDMKSGDEWSQVAYVTFKDAQGAETAL 357
           + V N+     E+D+++ F   G I  +++K+       A+V F+D + AE A+
Sbjct: 17  IYVGNLPSDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAI 70

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>SFRS5_RAT (Q09167) Splicing factor, arginine/serine-rich 5 (Pre-mRNA-splicing|
           factor SRP40) (Insulin-induced growth response protein
           CL-4) (Delayed-early protein HRS)
          Length = 269

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 16/54 (29%), Positives = 30/54 (55%)
 Frame = +1

Query: 196 VKVTNVSLSATEQDIKEFFSFSGDIEHVDMKSGDEWSQVAYVTFKDAQGAETAL 357
           V +  ++ +A E+D++ FF   G I  +D+K G       +V F+D + A+ A+
Sbjct: 6   VFIGRLNPAAREKDVERFFKGYGRIRDIDLKRG-----FGFVEFEDPRDADDAV 54

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>SFRS5_MOUSE (O35326) Splicing factor, arginine/serine-rich 5 (Pre-mRNA-splicing|
           factor SRP40) (Delayed-early protein HRS)
          Length = 270

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 16/54 (29%), Positives = 30/54 (55%)
 Frame = +1

Query: 196 VKVTNVSLSATEQDIKEFFSFSGDIEHVDMKSGDEWSQVAYVTFKDAQGAETAL 357
           V +  ++ +A E+D++ FF   G I  +D+K G       +V F+D + A+ A+
Sbjct: 6   VFIGRLNPAAREKDVERFFKGYGRIRDIDLKRG-----FGFVEFEDPRDADDAV 54

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>NCBP2_MOUSE (Q9CQ49) Nuclear cap-binding protein subunit 2 (20 kDa nuclear|
           cap-binding protein) (NCBP 20 kDa subunit) (CBP20)
          Length = 156

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
 Frame = +1

Query: 202 VTNVSLSATEQDIKEFFSFSGDIEHVDMKSGDEWSQVA----YVTFKDAQGAETALLLSG 369
           V N+S   TE+ I E FS SGDI+ + M   D+  + A    +V +     AE A+    
Sbjct: 44  VGNLSFYTTEEQIYELFSKSGDIKKIIM-GLDKMKKTACGFCFVEYYSRADAENAMRYIN 102

Query: 370 ATIVDLSVI 396
            T +D  +I
Sbjct: 103 GTRLDDRII 111

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>NCBP2_HUMAN (P52298) Nuclear cap-binding protein subunit 2 (20 kDa nuclear|
           cap-binding protein) (NCBP 20 kDa subunit) (CBP20)
           (NCBP-interacting protein 1) (NIP1) (Cell
           proliferation-inducing gene 55 protein)
          Length = 156

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
 Frame = +1

Query: 202 VTNVSLSATEQDIKEFFSFSGDIEHVDMKSGDEWSQVA----YVTFKDAQGAETALLLSG 369
           V N+S   TE+ I E FS SGDI+ + M   D+  + A    +V +     AE A+    
Sbjct: 44  VGNLSFYTTEEQIYELFSKSGDIKKIIM-GLDKMKKTACGFCFVEYYSRADAENAMRYIN 102

Query: 370 ATIVDLSVI 396
            T +D  +I
Sbjct: 103 GTRLDDRII 111

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>NCBP2_BOVIN (Q3ZBJ1) Nuclear cap-binding protein subunit 2|
          Length = 156

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
 Frame = +1

Query: 202 VTNVSLSATEQDIKEFFSFSGDIEHVDMKSGDEWSQVA----YVTFKDAQGAETALLLSG 369
           V N+S   TE+ I E FS SGDI+ + M   D+  + A    +V +     AE A+    
Sbjct: 44  VGNLSFYTTEEQIYELFSKSGDIKKIIM-GLDKMKKTACGFCFVEYYSRADAENAMRYIN 102

Query: 370 ATIVDLSVI 396
            T +D  +I
Sbjct: 103 GTRLDDRII 111

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>SFRS5_HUMAN (Q13243) Splicing factor, arginine/serine-rich 5 (Pre-mRNA-splicing|
           factor SRP40) (Delayed-early protein HRS)
          Length = 272

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 16/54 (29%), Positives = 30/54 (55%)
 Frame = +1

Query: 196 VKVTNVSLSATEQDIKEFFSFSGDIEHVDMKSGDEWSQVAYVTFKDAQGAETAL 357
           V +  ++ +A E+D++ FF   G I  +D+K G       +V F+D + A+ A+
Sbjct: 6   VFIGRLNPAAREKDVERFFKGYGRIRDIDLKRG-----FGFVEFEDPRDADDAV 54

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>CSTFT_HUMAN (Q9H0L4) Cleavage stimulation factor, 64 kDa subunit, tau variant|
           (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit,
           tau variant) (TauCstF-64)
          Length = 616

 Score = 30.0 bits (66), Expect = 2.8
 Identities = 19/56 (33%), Positives = 27/56 (48%)
 Frame = +1

Query: 190 RSVKVTNVSLSATEQDIKEFFSFSGDIEHVDMKSGDEWSQVAYVTFKDAQGAETAL 357
           RSV V N+   ATE+ +K+ FS  G +    +    E  +     F + Q  ETAL
Sbjct: 16  RSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETAL 71

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>YCQ9_SCHPO (O13674) Hypothetical RNA-binding protein C74.09 in chromosome III|
          Length = 654

 Score = 30.0 bits (66), Expect = 2.8
 Identities = 16/49 (32%), Positives = 28/49 (57%)
 Frame = +1

Query: 190 RSVKVTNVSLSATEQDIKEFFSFSGDIEHVDMKSGDEWSQVAYVTFKDA 336
           R+V + N+  S  E++I+E F   G IEH+ + S    + V ++  +DA
Sbjct: 299 RNVFIGNLPSSYHEKEIEEAFGKFGKIEHIKILSKKNIAFVHFLNIRDA 347

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>CSTFT_MOUSE (Q8C7E9) Cleavage stimulation factor, 64 kDa subunit, tau variant|
           (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit,
           tau variant) (TauCstF-64)
          Length = 632

 Score = 30.0 bits (66), Expect = 2.8
 Identities = 19/56 (33%), Positives = 27/56 (48%)
 Frame = +1

Query: 190 RSVKVTNVSLSATEQDIKEFFSFSGDIEHVDMKSGDEWSQVAYVTFKDAQGAETAL 357
           RSV V N+   ATE+ +K+ FS  G +    +    E  +     F + Q  ETAL
Sbjct: 16  RSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETAL 71

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>TRI42_HUMAN (Q8IWZ5) Tripartite motif protein 42|
          Length = 723

 Score = 30.0 bits (66), Expect = 2.8
 Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 2/58 (3%)
 Frame = +3

Query: 276 CGYEKW*RVVSSCICYL*RCPRSRDCTSSFGRYNS*SLCY--HCTCSRVSTARYCLCT 443
           C +++    + SC+C        R+CT     Y     C   HCTCS      +C C+
Sbjct: 12  CTWQRCCPQLCSCLCCKFIFTSERNCTCFPCPYKDERNCQFCHCTCSESPNCHWCCCS 69

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>NOP12_GIBZE (Q4IQW0) Nucleolar protein 12|
          Length = 559

 Score = 30.0 bits (66), Expect = 2.8
 Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
 Frame = +1

Query: 199 KVTNVSLSATEQDIKEFFSFSGDIEHVDMKSGDEWSQV----AYVTFKDAQGAETALLLS 366
           K  N + S  E+ +   FS  G +E+V +   D  ++V    AYV F DA   E ALLL 
Sbjct: 355 KKKNKTPSDIEEGLWRTFSTQGKVENVRVVR-DSKTRVGKGFAYVQFYDANDVEAALLLD 413

Query: 367 G 369
           G
Sbjct: 414 G 414

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>SRCH_RABIT (P16230) Sarcoplasmic reticulum histidine-rich calcium-binding|
           protein precursor
          Length = 852

 Score = 30.0 bits (66), Expect = 2.8
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = +3

Query: 354 TSSFGRYNS*SLCYHCT-CSRVSTARYCLC 440
           T  +G Y   SLC +CT C+R +   +C C
Sbjct: 768 TQEYGNYQQGSLCGYCTFCNRCTECEHCHC 797

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>NCBP2_XENLA (P52299) Nuclear cap binding protein subunit 2 (20 kDa nuclear cap|
           binding protein) (NCBP 20 kDa subunit) (CBP20)
           (Fragment)
          Length = 148

 Score = 29.6 bits (65), Expect = 3.7
 Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
 Frame = +1

Query: 202 VTNVSLSATEQDIKEFFSFSGDIEHVDM------KSGDEWSQVAYVTFKDAQGAETALLL 363
           V N+S   TE+ I E FS SGD++ + M      K+   +  V Y T  D   A TA+  
Sbjct: 36  VGNLSFYTTEEQIHELFSKSGDVKRIVMGLDKVKKTACGFCFVEYYTRAD---AGTAMRF 92

Query: 364 SGATIVDLSVI 396
              T +D  ++
Sbjct: 93  INGTRLDDRIV 103

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>CSTF2_PONPY (Q5RDA3) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa|
           subunit) (CF-1 64 kDa subunit) (CstF-64)
          Length = 577

 Score = 29.6 bits (65), Expect = 3.7
 Identities = 19/56 (33%), Positives = 27/56 (48%)
 Frame = +1

Query: 190 RSVKVTNVSLSATEQDIKEFFSFSGDIEHVDMKSGDEWSQVAYVTFKDAQGAETAL 357
           RSV V N+   ATE+ +K+ FS  G +    +    E  +     F + Q  ETAL
Sbjct: 16  RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETAL 71

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>CSTF2_HUMAN (P33240) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa|
           subunit) (CF-1 64 kDa subunit) (CstF-64)
          Length = 577

 Score = 29.6 bits (65), Expect = 3.7
 Identities = 19/56 (33%), Positives = 27/56 (48%)
 Frame = +1

Query: 190 RSVKVTNVSLSATEQDIKEFFSFSGDIEHVDMKSGDEWSQVAYVTFKDAQGAETAL 357
           RSV V N+   ATE+ +K+ FS  G +    +    E  +     F + Q  ETAL
Sbjct: 16  RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETAL 71

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>CSTF2_BOVIN (Q8HXM1) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa|
           subunit) (CF-1 64 kDa subunit) (CstF-64)
          Length = 572

 Score = 29.6 bits (65), Expect = 3.7
 Identities = 19/56 (33%), Positives = 27/56 (48%)
 Frame = +1

Query: 190 RSVKVTNVSLSATEQDIKEFFSFSGDIEHVDMKSGDEWSQVAYVTFKDAQGAETAL 357
           RSV V N+   ATE+ +K+ FS  G +    +    E  +     F + Q  ETAL
Sbjct: 16  RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETAL 71

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>CSTF2_MOUSE (Q8BIQ5) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa|
           subunit) (CF-1 64 kDa subunit) (CstF-64)
          Length = 580

 Score = 29.6 bits (65), Expect = 3.7
 Identities = 19/56 (33%), Positives = 27/56 (48%)
 Frame = +1

Query: 190 RSVKVTNVSLSATEQDIKEFFSFSGDIEHVDMKSGDEWSQVAYVTFKDAQGAETAL 357
           RSV V N+   ATE+ +K+ FS  G +    +    E  +     F + Q  ETAL
Sbjct: 16  RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETAL 71

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>CHP1_SCHPO (Q10103) Chromo domain protein 1|
          Length = 960

 Score = 29.6 bits (65), Expect = 3.7
 Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
 Frame = +1

Query: 193 SVKVTNVSLSATEQDIKEFFSF-SGDIEHVDMKS--GDEWSQVAYVTFKDAQGAETA 354
           ++ V++ S S T+QDI  +F+F  G+IE   +KS   D+   +AY+ F   + A+ A
Sbjct: 312 TILVSDNSGSLTKQDILSYFAFIKGNIEVFFLKSPKKDKVCNMAYIQFDSIEQAKLA 368

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>SFRS1_PONPY (Q5R7H2) Splicing factor, arginine/serine-rich 1|
          Length = 247

 Score = 28.9 bits (63), Expect = 6.3
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = +1

Query: 196 VKVTNVSLSATEQDIKEFFSFSGDIEHVDMKSGDEWSQVAYVTFKDAQGAETAL 357
           + V N+      +DI++ F   G I  +D+K+       A+V F+D + AE A+
Sbjct: 17  IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAV 70

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>SFRS1_MOUSE (Q6PDM2) Splicing factor, arginine/serine-rich 1|
          Length = 247

 Score = 28.9 bits (63), Expect = 6.3
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = +1

Query: 196 VKVTNVSLSATEQDIKEFFSFSGDIEHVDMKSGDEWSQVAYVTFKDAQGAETAL 357
           + V N+      +DI++ F   G I  +D+K+       A+V F+D + AE A+
Sbjct: 17  IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAV 70

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>SFRS1_HUMAN (Q07955) Splicing factor, arginine/serine-rich 1 (pre-mRNA-splicing|
           factor SF2, P33 subunit) (Alternative splicing factor
           ASF-1)
          Length = 247

 Score = 28.9 bits (63), Expect = 6.3
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = +1

Query: 196 VKVTNVSLSATEQDIKEFFSFSGDIEHVDMKSGDEWSQVAYVTFKDAQGAETAL 357
           + V N+      +DI++ F   G I  +D+K+       A+V F+D + AE A+
Sbjct: 17  IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAV 70

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>ARI2_MOUSE (Q9Z1K6) Protein ariadne-2 homolog (ARI-2) (Triad1 protein)|
           (UbcM4-interacting protein 48)
          Length = 492

 Score = 28.9 bits (63), Expect = 6.3
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -3

Query: 408 SRCNDNREI-NYCSARKKKCSLCSLGIFKGNICN 310
           ++C D+ E  NY SA  K C  C++ I K   CN
Sbjct: 277 TKCADDSETANYISAHTKDCPKCNICIEKNGGCN 310

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>SFRS1_CHICK (Q5ZML3) Splicing factor, arginine/serine-rich 1|
          Length = 256

 Score = 28.9 bits (63), Expect = 6.3
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = +1

Query: 196 VKVTNVSLSATEQDIKEFFSFSGDIEHVDMKSGDEWSQVAYVTFKDAQGAETAL 357
           + V N+      +DI++ F   G I  +D+K+       A+V F+D + AE A+
Sbjct: 17  IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAV 70

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>SFRS1_XENTR (Q6DII2) Splicing factor, arginine/serine-rich 1|
          Length = 267

 Score = 28.9 bits (63), Expect = 6.3
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = +1

Query: 196 VKVTNVSLSATEQDIKEFFSFSGDIEHVDMKSGDEWSQVAYVTFKDAQGAETAL 357
           + V N+      +DI++ F   G I  +D+K+       A+V F+D + AE A+
Sbjct: 18  IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAV 71

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>ARI2_HUMAN (O95376) Protein ariadne-2 homolog (ARI-2) (Triad1 protein)|
          Length = 493

 Score = 28.9 bits (63), Expect = 6.3
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -3

Query: 408 SRCNDNREI-NYCSARKKKCSLCSLGIFKGNICN 310
           ++C D+ E  NY SA  K C  C++ I K   CN
Sbjct: 278 TKCADDSETANYISAHTKDCPKCNICIEKNGGCN 311

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>TBA_AJECA (P53371) Tubulin alpha chain (Fragment)|
          Length = 418

 Score = 28.9 bits (63), Expect = 6.3
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 13/61 (21%)
 Frame = -1

Query: 425 GG*YSGAGAMITERSTI-------------VAPERRSAVSAPWASLKVTYAT*DHSSPLF 285
           GG  SG GA++ ER ++              AP+  ++V  P+ S+  T+ T +HS   F
Sbjct: 143 GGQGSGFGALLMERLSVDYGKKTKLEFCVYPAPQNATSVVEPYNSILTTHTTLEHSDVQF 202

Query: 284 I 282
           +
Sbjct: 203 M 203

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>SFRS1_BRARE (Q6NYA0) Splicing factor, arginine/serine-rich 1|
          Length = 245

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 15/54 (27%), Positives = 28/54 (51%)
 Frame = +1

Query: 196 VKVTNVSLSATEQDIKEFFSFSGDIEHVDMKSGDEWSQVAYVTFKDAQGAETAL 357
           + V N+      +D+++ F   G I  +D+K+       A+V F+D + AE A+
Sbjct: 17  IYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAV 70

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>SF1L1_BRARE (Q7SXP4) Splicing factor, arginine/serine-rich 1-like protein 1|
          Length = 245

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 15/54 (27%), Positives = 28/54 (51%)
 Frame = +1

Query: 196 VKVTNVSLSATEQDIKEFFSFSGDIEHVDMKSGDEWSQVAYVTFKDAQGAETAL 357
           + V N+      +D+++ F   G I  +D+K+       A+V F+D + AE A+
Sbjct: 17  IYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAV 70

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>ARI2_DROME (O76924) Protein ariadne-2 (Ari-2)|
          Length = 509

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = -3

Query: 408 SRCNDNREI-NYCSARKKKCSLCSLGIFKGNICNLRPLVTTFHIHMFN 268
           ++C D+ E  NY SA  K C  C + I K   CN        H+  FN
Sbjct: 292 TKCADDSETANYISAHTKDCPKCHICIEKNGGCN--------HMQCFN 331

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>GLTB_PORPU (P51375) Ferredoxin-dependent glutamate synthase (EC 1.4.7.1)|
           (Fd-GOGAT)
          Length = 1538

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 319 HMQLETTRHHFSYPHVQCLLKKKRIP*CLAQ 227
           ++  ET RH +S P  + L+ K R+P C  Q
Sbjct: 701 YLAFETARHWWSNPKTKMLMSKGRLPACNIQ 731

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>TBA1_EMENI (P24633) Tubulin alpha-1 chain|
          Length = 449

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 13/61 (21%)
 Frame = -1

Query: 425 GG*YSGAGAMITERSTI-------------VAPERRSAVSAPWASLKVTYAT*DHSSPLF 285
           GG  SG GA++ ER ++              AP+  ++V  P+ S+  T+ T +HS   F
Sbjct: 143 GGTGSGFGALLMERLSVDYGKKSKLEFCVYPAPQNATSVVEPYNSILTTHTTLEHSDCSF 202

Query: 284 I 282
           +
Sbjct: 203 M 203


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.313    0.127    0.362 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,831,892
Number of Sequences: 219361
Number of extensions: 764301
Number of successful extensions: 2087
Number of sequences better than 10.0: 65
Number of HSP's better than 10.0 without gapping: 1992
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2083
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2793557952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result