ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart51f08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|DQ244055.1| Hordeum vulgare reticulon mRNA, complete cds 373 e-100
2dbj|AK073583.1| Oryza sativa (japonica cultivar-group) cDNA clon... 240 3e-60
3dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 165 1e-37
4dbj|AP003527.3| Oryza sativa (japonica cultivar-group) genomic D... 165 1e-37
5gb|AY104742.1| Zea mays PCO152525 mRNA sequence 139 8e-30
6dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 82 2e-12
7dbj|AP004683.3| Oryza sativa (japonica cultivar-group) genomic D... 82 2e-12
8dbj|AK104196.1| Oryza sativa (japonica cultivar-group) cDNA clon... 82 2e-12
9dbj|AK072628.1| Oryza sativa (japonica cultivar-group) cDNA clon... 82 2e-12
10dbj|AK059921.1| Oryza sativa (japonica cultivar-group) cDNA clon... 82 2e-12
11gb|AY105560.1| Zea mays PCO120447 mRNA sequence 50 0.006
12gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 44 0.37
13dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete g... 44 0.37
14gb|AE017221.1| Thermus thermophilus HB27, complete genome 44 0.37
15dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 42 1.5
16gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome 40 5.7
17ref|XM_870740.1| PREDICTED: Bos taurus similar to Interferon reg... 40 5.7
18gb|AC004877.1| Homo sapiens PAC clone RP4-751H13 from 7, complet... 40 5.7
19emb|Z69665.2|CEZK897 Caenorhabditis elegans Cosmid ZK897, comple... 40 5.7
20emb|Z69659.1|CEF07C6 Caenorhabditis elegans Cosmid F07C6, comple... 40 5.7
21emb|AL645950.13| Mouse DNA sequence from clone RP23-13C17 on chr... 40 5.7
22gb|AC087683.5| Homo sapiens chromosome 18, clone RP11-687E1, com... 40 5.7
23gb|DQ067486.1|DQ067486S1 Lemur catta msh homeobox 1-like protein... 40 5.7
24ref|NM_064862.3| Caenorhabditis elegans Ribosomal Protein, Small... 40 5.7
25dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
26gb|AC087415.1|AC087415 Caenorhabditis briggsae cosmid CB005O21, ... 40 5.7
27gb|AC084604.1|CBRG43O03 Caenorhabditis briggsae cosmid G43O03, c... 40 5.7
28dbj|AP004687.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
29dbj|AP004765.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
30gb|U80953.1| Caenorhabditis elegans cosmid B0412, complete sequence 40 5.7 
>gb|DQ244055.1| Hordeum vulgare reticulon mRNA, complete cds
          Length = 615

 Score =  373 bits (188), Expect = e-100
 Identities = 194/196 (98%)
 Strand = Plus / Plus

                                                                       
Query: 231 cgaggacacctccgtgcacaaggtgcttggtggcggtaagactgctgatgtactgttatg 290
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 15  cgaggacacctccgtgcacaaggtgcttggtggcggtaaaactgctgatgtactgttatg 74

                                                                       
Query: 291 gaaggacaagaaaacaactgctgtggtgatcggtggcacaactgtcatatgggttttatt 350
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 75  gaagaacaagaaaacaactgctgtggtgatcggtggcacaactgtcatatgggttttatt 134

                                                                       
Query: 351 tgaagtgcttgattaccatctcttaactctgttatcccatgtgatgattggtgtcctggc 410
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 135 tgaagtgcttgattaccatctcttaactctgttatcccatgtgatgattggtgtcctggc 194

                           
Query: 411 catcttgttcgtgtgg 426
           ||||||||||||||||
Sbjct: 195 catcttgttcgtgtgg 210



 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 49 atggccgatccagccgagga 68
          ||||||||||||||||||||
Sbjct: 1  atggccgatccagccgagga 20
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>dbj|AK073583.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033051P18, full
           insert sequence
          Length = 1147

 Score =  240 bits (121), Expect = 3e-60
 Identities = 190/213 (89%)
 Strand = Plus / Plus

                                                                       
Query: 214 gggttcaggctgctcggcgaggacacctccgtgcacaaggtgcttggtggcggtaagact 273
           ||||||||||||||||| ||||||||||||||||||||||  ||||| |||||||| |||
Sbjct: 238 gggttcaggctgctcggggaggacacctccgtgcacaaggctcttgggggcggtaaaact 297

                                                                       
Query: 274 gctgatgtactgttatggaaggacaagaaaacaactgctgtggtgatcggtggcacaact 333
           ||||||||||| |||||||| |||||||| ||| | ||||| ||||| |||||  |||||
Sbjct: 298 gctgatgtactattatggaaagacaagaagacatccgctgtagtgattggtggtgcaact 357

                                                                       
Query: 334 gtcatatgggttttatttgaagtgcttgattaccatctcttaactctgttatcccatgtg 393
           ||||||||| | || |||||||||||||||||||||||||| |||||| | |||||||||
Sbjct: 358 gtcatatggatcttgtttgaagtgcttgattaccatctcttgactctgctttcccatgtg 417

                                            
Query: 394 atgattggtgtcctggccatcttgttcgtgtgg 426
           |||||||||| | |||||||||||||| |||||
Sbjct: 418 atgattggtgccttggccatcttgttcctgtgg 450
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  165 bits (83), Expect = 1e-37
 Identities = 137/155 (88%)
 Strand = Plus / Plus

                                                                            
Query: 272      ctgctgatgtactgttatggaaggacaagaaaacaactgctgtggtgatcggtggcacaa 331
                ||||||||||||| |||||||| |||||||| ||| | ||||| ||||| |||||  |||
Sbjct: 17621503 ctgctgatgtactattatggaaagacaagaagacatccgctgtagtgattggtggtgcaa 17621562

                                                                            
Query: 332      ctgtcatatgggttttatttgaagtgcttgattaccatctcttaactctgttatcccatg 391
                ||||||||||| | || |||||||||||||||||||||||||| |||||| | |||||||
Sbjct: 17621563 ctgtcatatggatcttgtttgaagtgcttgattaccatctcttgactctgctttcccatg 17621622

                                                   
Query: 392      tgatgattggtgtcctggccatcttgttcgtgtgg 426
                |||||||||||| | |||||||||||||| |||||
Sbjct: 17621623 tgatgattggtgccttggccatcttgttcctgtgg 17621657



 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 52/56 (92%)
 Strand = Plus / Plus

                                                                        
Query: 214      gggttcaggctgctcggcgaggacacctccgtgcacaaggtgcttggtggcggtaa 269
                ||||||||||||||||| ||||||||||||||||||||||  ||||| ||||||||
Sbjct: 17619068 gggttcaggctgctcggggaggacacctccgtgcacaaggctcttgggggcggtaa 17619123



 Score = 40.1 bits (20), Expect = 5.7
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                   
Query: 134     agccgccggccagcgccgacgcctcgccggagaagg 169
               |||||||||||  ||||| |||| ||||||||||||
Sbjct: 5627397 agccgccggccgccgccgccgccgcgccggagaagg 5627432
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>dbj|AP003527.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0564B04
          Length = 64684

 Score =  165 bits (83), Expect = 1e-37
 Identities = 137/155 (88%)
 Strand = Plus / Plus

                                                                         
Query: 272   ctgctgatgtactgttatggaaggacaagaaaacaactgctgtggtgatcggtggcacaa 331
             ||||||||||||| |||||||| |||||||| ||| | ||||| ||||| |||||  |||
Sbjct: 47851 ctgctgatgtactattatggaaagacaagaagacatccgctgtagtgattggtggtgcaa 47910

                                                                         
Query: 332   ctgtcatatgggttttatttgaagtgcttgattaccatctcttaactctgttatcccatg 391
             ||||||||||| | || |||||||||||||||||||||||||| |||||| | |||||||
Sbjct: 47911 ctgtcatatggatcttgtttgaagtgcttgattaccatctcttgactctgctttcccatg 47970

                                                
Query: 392   tgatgattggtgtcctggccatcttgttcgtgtgg 426
             |||||||||||| | |||||||||||||| |||||
Sbjct: 47971 tgatgattggtgccttggccatcttgttcctgtgg 48005



 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 52/56 (92%)
 Strand = Plus / Plus

                                                                     
Query: 214   gggttcaggctgctcggcgaggacacctccgtgcacaaggtgcttggtggcggtaa 269
             ||||||||||||||||| ||||||||||||||||||||||  ||||| ||||||||
Sbjct: 45416 gggttcaggctgctcggggaggacacctccgtgcacaaggctcttgggggcggtaa 45471
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>gb|AY104742.1| Zea mays PCO152525 mRNA sequence
          Length = 1163

 Score =  139 bits (70), Expect = 8e-30
 Identities = 184/222 (82%)
 Strand = Plus / Plus

                                                                       
Query: 205 aggtcccgtgggttcaggctgctcggcgaggacacctccgtgcacaaggtgcttggtggc 264
           |||||||| || |||||||| || || |||||||| |||||||||||    ||||| |||
Sbjct: 236 aggtcccggggattcaggcttcttggagaggacacttccgtgcacaaatcccttgggggc 295

                                                                       
Query: 265 ggtaagactgctgatgtactgttatggaaggacaagaaaacaactgctgtggtgatcggt 324
           ||||| |||||||| || ||||||||||| |||||||||||  ||||||| || || || 
Sbjct: 296 ggtaaaactgctgacgttctgttatggaaagacaagaaaacttctgctgttgtaataggc 355

                                                                       
Query: 325 ggcacaactgtcatatgggttttatttgaagtgcttgattaccatctcttaactctgtta 384
           ||| |||||||||| |||||| | || ||||||||||||||||| ||| | || ||| ||
Sbjct: 356 ggcgcaactgtcatctgggttctgttcgaagtgcttgattaccacctcctgaccctgata 415

                                                     
Query: 385 tcccatgtgatgattggtgtcctggccatcttgttcgtgtgg 426
           ||||||||  |||||||||| || |||| ||| ||| |||||
Sbjct: 416 tcccatgtactgattggtgtgcttgccaccttattcctgtgg 457
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 122/149 (81%)
 Strand = Plus / Plus

                                                                           
Query: 272     ctgctgatgtactgttatggaaggacaagaaaacaactgctgtggtgatcggtggcacaa 331
               ||||||||||||| || ||||| |||||||| |   ||||||  ||||| |||||| |||
Sbjct: 9498262 ctgctgatgtacttttgtggaaagacaagaagatctctgctgcagtgataggtggcgcaa 9498321

                                                                           
Query: 332     ctgtcatatgggttttatttgaagtgcttgattaccatctcttaactctgttatcccatg 391
               ||||  | |||||| | ||||||||  ||||||||||| || | |||||| |||| ||||
Sbjct: 9498322 ctgtgttgtgggttctctttgaagttgttgattaccatttcctcactctgatatctcatg 9498381

                                            
Query: 392     tgatgattggtgtcctggccatcttgttc 420
               |  |||| ||||| |||||||||||||||
Sbjct: 9498382 tcctgatcggtgtactggccatcttgttc 9498410
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>dbj|AP004683.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0006C08
          Length = 151987

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 122/149 (81%)
 Strand = Plus / Plus

                                                                          
Query: 272    ctgctgatgtactgttatggaaggacaagaaaacaactgctgtggtgatcggtggcacaa 331
              ||||||||||||| || ||||| |||||||| |   ||||||  ||||| |||||| |||
Sbjct: 111823 ctgctgatgtacttttgtggaaagacaagaagatctctgctgcagtgataggtggcgcaa 111882

                                                                          
Query: 332    ctgtcatatgggttttatttgaagtgcttgattaccatctcttaactctgttatcccatg 391
              ||||  | |||||| | ||||||||  ||||||||||| || | |||||| |||| ||||
Sbjct: 111883 ctgtgttgtgggttctctttgaagttgttgattaccatttcctcactctgatatctcatg 111942

                                           
Query: 392    tgatgattggtgtcctggccatcttgttc 420
              |  |||| ||||| |||||||||||||||
Sbjct: 111943 tcctgatcggtgtactggccatcttgttc 111971
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>dbj|AK104196.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-H05, full
           insert sequence
          Length = 993

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 122/149 (81%)
 Strand = Plus / Plus

                                                                       
Query: 272 ctgctgatgtactgttatggaaggacaagaaaacaactgctgtggtgatcggtggcacaa 331
           ||||||||||||| || ||||| |||||||| |   ||||||  ||||| |||||| |||
Sbjct: 190 ctgctgatgtacttttgtggaaagacaagaagatctctgctgcagtgataggtggcgcaa 249

                                                                       
Query: 332 ctgtcatatgggttttatttgaagtgcttgattaccatctcttaactctgttatcccatg 391
           ||||  | |||||| | ||||||||  ||||||||||| || | |||||| |||| ||||
Sbjct: 250 ctgtgttgtgggttctctttgaagttgttgattaccatttcctcactctgatatctcatg 309

                                        
Query: 392 tgatgattggtgtcctggccatcttgttc 420
           |  |||| ||||| |||||||||||||||
Sbjct: 310 tcctgatcggtgtactggccatcttgttc 338
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>dbj|AK072628.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023130B01, full
           insert sequence
          Length = 880

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 122/149 (81%)
 Strand = Plus / Plus

                                                                       
Query: 272 ctgctgatgtactgttatggaaggacaagaaaacaactgctgtggtgatcggtggcacaa 331
           ||||||||||||| || ||||| |||||||| |   ||||||  ||||| |||||| |||
Sbjct: 72  ctgctgatgtacttttgtggaaagacaagaagatctctgctgcagtgataggtggcgcaa 131

                                                                       
Query: 332 ctgtcatatgggttttatttgaagtgcttgattaccatctcttaactctgttatcccatg 391
           ||||  | |||||| | ||||||||  ||||||||||| || | |||||| |||| ||||
Sbjct: 132 ctgtgttgtgggttctctttgaagttgttgattaccatttcctcactctgatatctcatg 191

                                        
Query: 392 tgatgattggtgtcctggccatcttgttc 420
           |  |||| ||||| |||||||||||||||
Sbjct: 192 tcctgatcggtgtactggccatcttgttc 220
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>dbj|AK059921.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-209-G09, full
           insert sequence
          Length = 1028

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 122/149 (81%)
 Strand = Plus / Plus

                                                                       
Query: 272 ctgctgatgtactgttatggaaggacaagaaaacaactgctgtggtgatcggtggcacaa 331
           ||||||||||||| || ||||| |||||||| |   ||||||  ||||| |||||| |||
Sbjct: 239 ctgctgatgtacttttgtggaaagacaagaagatctctgctgcagtgataggtggcgcaa 298

                                                                       
Query: 332 ctgtcatatgggttttatttgaagtgcttgattaccatctcttaactctgttatcccatg 391
           ||||  | |||||| | ||||||||  ||||||||||| || | |||||| |||| ||||
Sbjct: 299 ctgtgttgtgggttctctttgaagttgttgattaccatttcctcactctgatatctcatg 358

                                        
Query: 392 tgatgattggtgtcctggccatcttgttc 420
           |  |||| ||||| |||||||||||||||
Sbjct: 359 tcctgatcggtgtactggccatcttgttc 387
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>gb|AY105560.1| Zea mays PCO120447 mRNA sequence
          Length = 1191

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 67/81 (82%)
 Strand = Plus / Plus

                                                                       
Query: 265 ggtaagactgctgatgtactgttatggaaggacaagaaaacaactgctgtggtgatcggt 324
           ||||| |||||||||||||| || ||||| |||||||| ||  |||||| |||  | |||
Sbjct: 258 ggtaaaactgctgatgtacttttgtggaaagacaagaagacctctgctgcggtagttggt 317

                                
Query: 325 ggcacaactgtcatatgggtt 345
           ||  |||||||| ||||||||
Sbjct: 318 ggtgcaactgtcctatgggtt 338
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                         
Query: 137     cgccggccagcgccgacgcctcgccg 162
               ||||||||||||||| ||||||||||
Sbjct: 3839555 cgccggccagcgccgccgcctcgccg 3839530
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>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome
          Length = 1849742

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 153     cgcctcgccggagaaggcggcc 174
               ||||||||||||||||||||||
Sbjct: 1027165 cgcctcgccggagaaggcggcc 1027144
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>gb|AE017221.1| Thermus thermophilus HB27, complete genome
          Length = 1894877

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 153    cgcctcgccggagaaggcggcc 174
              ||||||||||||||||||||||
Sbjct: 700139 cgcctcgccggagaaggcggcc 700118
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                                
Query: 177     gcccgcgtctgcgccggacaccacggtcaggtc 209
               ||||||||| ||| ||||||| |||||||||||
Sbjct: 2094902 gcccgcgtccgcgtcggacacgacggtcaggtc 2094934
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>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome
          Length = 4109442

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 140     cggccagcgccgacgcctcgccgg 163
               |||||||||||| |||||||||||
Sbjct: 2462038 cggccagcgccgccgcctcgccgg 2462061
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>ref|XM_870740.1| PREDICTED: Bos taurus similar to Interferon regulatory factor 4
            (IRF-4) (Lymphocyte specific interferon regulatory
            factor) (LSIRF) (NF-EM5) (Multiple myeloma oncogene 1)
            (LOC618409), mRNA
          Length = 1584

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 131  cggagccgccggccagcgcc 150
            ||||||||||||||||||||
Sbjct: 1085 cggagccgccggccagcgcc 1104
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>gb|AC004877.1| Homo sapiens PAC clone RP4-751H13 from 7, complete sequence
          Length = 128361

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 167   aggcggccccgcccgcgtct 186
             ||||||||||||||||||||
Sbjct: 28377 aggcggccccgcccgcgtct 28358
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>emb|Z69665.2|CEZK897 Caenorhabditis elegans Cosmid ZK897, complete sequence
          Length = 29518

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 335   tcatatgggttttatttgaa 354
             ||||||||||||||||||||
Sbjct: 29470 tcatatgggttttatttgaa 29489
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>emb|Z69659.1|CEF07C6 Caenorhabditis elegans Cosmid F07C6, complete sequence
          Length = 34797

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 335 tcatatgggttttatttgaa 354
           ||||||||||||||||||||
Sbjct: 58  tcatatgggttttatttgaa 77
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>emb|AL645950.13| Mouse DNA sequence from clone RP23-13C17 on chromosome 1 Contains the
             Eef1b2 gene for eukaryotic translation elongation factor 1
             beta 2, the Ndufs1 gene for NADH dehydrogenase
             (ubiquinone) Fe-S protein 1 (Ndufs1), the Gpr1 gene for
             G-protein coupled receptor 1, the 5' end of a novel gene,
             two novel genes and two CpG islands, complete sequence
          Length = 138564

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 401   gtgtcctggccatcttgttc 420
             ||||||||||||||||||||
Sbjct: 19185 gtgtcctggccatcttgttc 19166
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>gb|AC087683.5| Homo sapiens chromosome 18, clone RP11-687E1, complete sequence
          Length = 181036

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 267    taagactgctgatgtactgt 286
              ||||||||||||||||||||
Sbjct: 112468 taagactgctgatgtactgt 112449
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>gb|DQ067486.1|DQ067486S1 Lemur catta msh homeobox 1-like protein (MSX1) gene, exon 1
          Length = 1600

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 159  gccggagaaggcggccccgc 178
            ||||||||||||||||||||
Sbjct: 1351 gccggagaaggcggccccgc 1370
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>ref|NM_064862.3| Caenorhabditis elegans Ribosomal Protein, Small subunit family
           member (rps-29) (rps-29) mRNA, complete cds
          Length = 321

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 179 ccgcgtctgcgccggacaccacgg 202
           |||||||||||| |||||||||||
Sbjct: 77  ccgcgtctgcgctggacaccacgg 100
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 147      cgccgacgcctcgccggaga 166
                ||||||||||||||||||||
Sbjct: 25454204 cgccgacgcctcgccggaga 25454185
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>gb|AC087415.1|AC087415 Caenorhabditis briggsae cosmid CB005O21, complete sequence
          Length = 68731

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 179   ccgcgtctgcgccggacaccacgg 202
             |||||||||||| |||||||||||
Sbjct: 63580 ccgcgtctgcgctggacaccacgg 63603
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>gb|AC084604.1|CBRG43O03 Caenorhabditis briggsae cosmid G43O03, complete sequence
          Length = 39067

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 315   ggtgatcggtggcacaactg 334
             ||||||||||||||||||||
Sbjct: 23718 ggtgatcggtggcacaactg 23699
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>dbj|AP004687.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0021C04
          Length = 162115

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                 
Query: 134   agccgccggccagcgccgacgcctcgccggagaagg 169
             |||||||||||  ||||| |||| ||||||||||||
Sbjct: 19544 agccgccggccgccgccgccgccgcgccggagaagg 19579
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>dbj|AP004765.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0711H09
          Length = 185858

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 147   cgccgacgcctcgccggaga 166
             ||||||||||||||||||||
Sbjct: 85520 cgccgacgcctcgccggaga 85501
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>gb|U80953.1| Caenorhabditis elegans cosmid B0412, complete sequence
          Length = 33975

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 179  ccgcgtctgcgccggacaccacgg 202
            |||||||||||| |||||||||||
Sbjct: 5647 ccgcgtctgcgctggacaccacgg 5670


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,682,306
Number of Sequences: 3902068
Number of extensions: 2682306
Number of successful extensions: 52247
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 51684
Number of HSP's gapped (non-prelim): 562
length of query: 427
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 405
effective length of database: 17,147,199,772
effective search space: 6944615907660
effective search space used: 6944615907660
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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