ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart51f07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GRASP_HUMAN (Q7Z6J2) General receptor for phosphoinositides 1-as... 29 3.1
2DCNL4_MOUSE (Q8CCA0) DCN1-like protein 4 (Defective in cullin ne... 29 4.1
3DCNL4_HUMAN (Q92564) DCN1-like protein 4 (Defective in cullin ne... 28 7.0

>GRASP_HUMAN (Q7Z6J2) General receptor for phosphoinositides 1-associated|
           scaffold protein (GRP1-associated scaffold protein)
          Length = 395

 Score = 29.3 bits (64), Expect = 3.1
 Identities = 14/29 (48%), Positives = 15/29 (51%)
 Frame = -3

Query: 91  GGDRHARGDVASCCSSTCFSHRSVSPSLP 5
           GG R ARGD       TCF   S  P+LP
Sbjct: 271 GGARRARGDADDAVYHTCFFGDSEPPALP 299



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>DCNL4_MOUSE (Q8CCA0) DCN1-like protein 4 (Defective in cullin neddylation|
           protein 1-like protein 4) (DCUN1 domain-containing
           protein 4)
          Length = 292

 Score = 28.9 bits (63), Expect = 4.1
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -3

Query: 100 QELGGDRHARGDVASCCSSTCFS 32
           +++G D H  G + SC SS CFS
Sbjct: 36  EDVGQDDHQTGSLRSCSSSDCFS 58



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>DCNL4_HUMAN (Q92564) DCN1-like protein 4 (Defective in cullin neddylation|
           protein 1-like protein 4) (DCUN1 domain-containing
           protein 4)
          Length = 292

 Score = 28.1 bits (61), Expect = 7.0
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 100 QELGGDRHARGDVASCCSSTCFS 32
           +++G D H  G + SC SS CF+
Sbjct: 36  EDIGQDDHQTGSLRSCSSSDCFN 58


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,515,153
Number of Sequences: 219361
Number of extensions: 249671
Number of successful extensions: 1192
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1192
length of database: 80,573,946
effective HSP length: 24
effective length of database: 75,309,282
effective search space used: 1807422768
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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