ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart51f01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1WRK13_ARATH (Q9SVB7) Probable WRKY transcription factor 13 (WRKY... 29 3.4
2CI025_BRARE (Q6DC60) Protein C9orf25 homolog 28 4.4
3CI025_MOUSE (Q9D772) Protein C9orf25 homolog 28 4.4
4CI025_HUMAN (Q8IW50) Protein C9orf25 28 4.4
5APC_XENLA (P70039) Adenomatous polyposis coli homolog (Protein APC) 28 5.7
6MRP2_ARATH (Q42093) Multidrug resistance-associated protein 2 (E... 28 5.7
7EP400_HUMAN (Q96L91) E1A-binding protein p400 (EC 3.6.1.-) (p400... 28 7.5
8CWC21_USTMA (Q4P0G6) Pre-mRNA-splicing factor CWC21 28 7.5
9ZBTB4_HUMAN (Q9P1Z0) Zinc finger and BTB domain-containing prote... 28 7.5
10VGLX_EHV1V (Q6S6W0) Glycoprotein X precursor 28 7.5
11VGLX_EHV1B (P28968) Glycoprotein X precursor 28 7.5
12EP400_MOUSE (Q8CHI8) E1A-binding protein p400 (EC 3.6.1.-) (p400... 28 7.5
13GPR37_HUMAN (O15354) Probable G-protein coupled receptor 37 prec... 27 9.8

>WRK13_ARATH (Q9SVB7) Probable WRKY transcription factor 13 (WRKY DNA-binding|
           protein 13)
          Length = 304

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 10/15 (66%), Positives = 10/15 (66%)
 Frame = -3

Query: 200 QRHLSRPWTWPCQRG 156
           QR LS PW W CQ G
Sbjct: 122 QRPLSNPWAWSCQAG 136



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>CI025_BRARE (Q6DC60) Protein C9orf25 homolog|
          Length = 186

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 303 MTVIPPRGILDTCRACSATQSTS 235
           + +IPP+ +  TC  C AT ST+
Sbjct: 160 LDLIPPKSVNPTCMCCQATSSTA 182



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>CI025_MOUSE (Q9D772) Protein C9orf25 homolog|
          Length = 157

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 303 MTVIPPRGILDTCRACSATQSTS 235
           + +IPP+ +  TC  C AT ST+
Sbjct: 131 LDLIPPKSVNPTCMCCQATSSTA 153



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>CI025_HUMAN (Q8IW50) Protein C9orf25|
          Length = 157

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 303 MTVIPPRGILDTCRACSATQSTS 235
           + +IPP+ +  TC  C AT ST+
Sbjct: 131 LDLIPPKSVNPTCMCCQATSSTA 153



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>APC_XENLA (P70039) Adenomatous polyposis coli homolog (Protein APC)|
          Length = 2829

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 19/45 (42%), Positives = 24/45 (53%)
 Frame = -3

Query: 278  SSTPVGRARRPSRHRTGASAARRMKPQRHLSRPWTWPCQRGRRPG 144
            SSTP G ++  SR  +  SA+ R  PQ  LSRP   P +    PG
Sbjct: 2287 SSTPGGSSKGNSRSGSRDSASSRPSPQ-PLSRPLQSPGRNSISPG 2330



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>MRP2_ARATH (Q42093) Multidrug resistance-associated protein 2 (EC 3.6.3.44)|
           (Glutathione S-conjugate transporting ATPase 2)
           (ATP-energized glutathione S-conjugate pump 2)
          Length = 1623

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +2

Query: 98  LLPTPPTDSGEPACSLR 148
           LLP PP + GEPA S+R
Sbjct: 601 LLPNPPIEPGEPAISIR 617



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>EP400_HUMAN (Q96L91) E1A-binding protein p400 (EC 3.6.1.-) (p400 kDa|
            SWI2/SNF2-related protein) (Domino homolog) (hDomino)
            (CAG repeat protein 32) (Trinucleotide repeat-containing
            gene 12 protein)
          Length = 3160

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 8/36 (22%)
 Frame = -3

Query: 275  STPVGRARRP--------SRHRTGASAARRMKPQRH 192
            +TP+  A+ P         RH+T  SAA R K QRH
Sbjct: 2272 ATPIPEAKLPPVYVRKERKRHKTDPSAAGRKKKQRH 2307



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>CWC21_USTMA (Q4P0G6) Pre-mRNA-splicing factor CWC21|
          Length = 348

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = -3

Query: 296 SFLQGASSTPVGRARRPSRHRTGASAARRMKPQRHLSRPWTWPCQRGRRPGG 141
           S  + + S    R+R PSR  +  S +   +P+RH S     P    RRP G
Sbjct: 296 SHSRSSRSRSPSRSRSPSRCASSRSRSPAHRPRRHSSSRVNPPGPPPRRPAG 347



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>ZBTB4_HUMAN (Q9P1Z0) Zinc finger and BTB domain-containing protein 4|
           (KAISO-like zinc finger protein 1) (KAISO-L1)
          Length = 1013

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
 Frame = -3

Query: 281 ASSTPVGRARRPSRHRTGASA-----ARRMKPQRHLSRPWTWPCQRGRRP 147
           A+ +P GRAR   RHR G  A      R+++  +      +   + GRRP
Sbjct: 712 AAESPAGRARTERRHRCGDCAQTFTTLRKLRKHQEAHGGGSHSSRAGRRP 761



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>VGLX_EHV1V (Q6S6W0) Glycoprotein X precursor|
          Length = 866

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 78  SEETLSFPTTSPTCDRRTPEEGTPSS 1
           +E T   PT++PT D  TP E T ++
Sbjct: 380 AESTTEAPTSTPTTDTTTPSEATTAT 405



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>VGLX_EHV1B (P28968) Glycoprotein X precursor|
          Length = 797

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 78  SEETLSFPTTSPTCDRRTPEEGTPSS 1
           +E T   PT++PT D  TP E T ++
Sbjct: 311 AESTTEAPTSTPTTDTTTPSEATTAT 336



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>EP400_MOUSE (Q8CHI8) E1A-binding protein p400 (EC 3.6.1.-) (p400 kDa|
            SWI2/SNF2-related protein) (Domino homolog) (mDomino)
          Length = 3072

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 8/36 (22%)
 Frame = -3

Query: 275  STPVGRARRP--------SRHRTGASAARRMKPQRH 192
            +TP+  A+ P         RH+T  SAA R K QRH
Sbjct: 2188 TTPIPEAKLPPVYVRKERKRHKTDPSAAGRKKKQRH 2223



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>GPR37_HUMAN (O15354) Probable G-protein coupled receptor 37 precursor|
           (Endothelin B receptor-like protein 1) (ETBR-LP-1)
           (Parkin-associated endothelin receptor-like receptor)
           (PAELR)
          Length = 613

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 19/52 (36%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
 Frame = -3

Query: 296 SFLQGAS-STPVGRARRPSRHRTG-ASAARRMKPQRHLSRPWTWPCQRGRRP 147
           +FL G S   P    R P+  R   ASAA    P      PW W   RG+ P
Sbjct: 79  AFLAGPSWDLPAAPGRDPAAGRGAEASAAGPPGPPTRPPGPWRWKGARGQEP 130


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,979,460
Number of Sequences: 219361
Number of extensions: 656952
Number of successful extensions: 2066
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2017
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2066
length of database: 80,573,946
effective HSP length: 84
effective length of database: 62,147,622
effective search space used: 1491542928
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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