ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart51f01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 135 1e-28
2dbj|AP005406.3| Oryza sativa (japonica cultivar-group) genomic D... 135 1e-28
3ref|XM_479647.1| Oryza sativa (japonica cultivar-group), mRNA 129 6e-27
4ref|NM_195260.1| Oryza sativa (japonica cultivar-group) unknown ... 121 1e-24
5gb|AC104616.5| Oryza sativa (japonica cultivar-group) chromosome... 121 1e-24
6gb|AC105932.6| Oryza sativa (japonica cultivar-group) chromosome... 121 1e-24
7dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 121 1e-24
8dbj|AK101911.1| Oryza sativa (japonica cultivar-group) cDNA clon... 121 1e-24
9dbj|AK070874.1| Oryza sativa (japonica cultivar-group) cDNA clon... 121 1e-24
10dbj|AK059182.1| Oryza sativa (japonica cultivar-group) cDNA clon... 121 1e-24
11gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 121 1e-24
12ref|NM_197157.1| Oryza sativa (japonica cultivar-group) putative... 46 0.070
13gb|AC068950.11| Oryza sativa chromosome 10 BAC OSJNBa0041P03 gen... 46 0.070
14gb|AY643843.1|AY643842S2 Hordeum vulgare subsp. vulgare clones B... 40 4.3
15ref|XM_527376.1| PREDICTED: Pan troglodytes ring finger protein ... 40 4.3
16emb|AL353597.20| Human DNA sequence from clone RP1-153P14 on chr... 40 4.3
17emb|AL939125.1|SCO939125 Streptomyces coelicolor A3(2) complete ... 40 4.3
18gb|AC010615.9| Homo sapiens chromosome 19 clone CTD-2561J22, com... 40 4.3
19emb|BX511270.9| Zebrafish DNA sequence from clone DKEY-35N12 in ... 40 4.3
20dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 4.3
21dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 40 4.3
22gb|AC134523.5| Mus musculus BAC clone RP24-492M8 from 5, complet... 40 4.3 
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8,
             complete sequence
          Length = 28434780

 Score =  135 bits (68), Expect = 1e-28
 Identities = 101/112 (90%)
 Strand = Plus / Plus

                                                                         
Query: 35    tcgcaggtggggctggtggtcgggaagctcagcgtctcctccgaccgcgccctcgtctac 94
             |||||||||||||| || ||||| |||||||||| ||| |||||||| ||||||| ||||
Sbjct: 72099 tcgcaggtggggctcgtcgtcggcaagctcagcgcctcttccgaccgtgccctcgcctac 72158

                                                                 
Query: 95    tccctgctccccacgccgcccaccgattccggcgagcccgcttgctccctcc 146
             |||||  |||||||||||||||||||||||||||  ||||||||||||||||
Sbjct: 72159 tccctcatccccacgccgcccaccgattccggcgctcccgcttgctccctcc 72210



 Score = 69.9 bits (35), Expect = 5e-09
 Identities = 50/55 (90%)
 Strand = Plus / Plus

                                                                    
Query: 265   acaggtgtcgaggatgccccttggaggaatgactgtcataggtatctacatatgg 319
             |||||| ||||||||||  |||||||||||||| ||||||||||| |||||||||
Sbjct: 72567 acaggtctcgaggatgcttcttggaggaatgaccgtcataggtatttacatatgg 72621



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                   
Query: 233   ttcgatgtcgactgggtcgccgagcacgcccgacaggt 270
             ||||||||||||||| ||||||||||||| || |||||
Sbjct: 72267 ttcgatgtcgactggctcgccgagcacgcgcgccaggt 72304
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>dbj|AP005406.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:B1147B12
          Length = 127902

 Score =  135 bits (68), Expect = 1e-28
 Identities = 101/112 (90%)
 Strand = Plus / Plus

                                                                         
Query: 35    tcgcaggtggggctggtggtcgggaagctcagcgtctcctccgaccgcgccctcgtctac 94
             |||||||||||||| || ||||| |||||||||| ||| |||||||| ||||||| ||||
Sbjct: 72099 tcgcaggtggggctcgtcgtcggcaagctcagcgcctcttccgaccgtgccctcgcctac 72158

                                                                 
Query: 95    tccctgctccccacgccgcccaccgattccggcgagcccgcttgctccctcc 146
             |||||  |||||||||||||||||||||||||||  ||||||||||||||||
Sbjct: 72159 tccctcatccccacgccgcccaccgattccggcgctcccgcttgctccctcc 72210



 Score = 69.9 bits (35), Expect = 5e-09
 Identities = 50/55 (90%)
 Strand = Plus / Plus

                                                                    
Query: 265   acaggtgtcgaggatgccccttggaggaatgactgtcataggtatctacatatgg 319
             |||||| ||||||||||  |||||||||||||| ||||||||||| |||||||||
Sbjct: 72567 acaggtctcgaggatgcttcttggaggaatgaccgtcataggtatttacatatgg 72621



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                   
Query: 233   ttcgatgtcgactgggtcgccgagcacgcccgacaggt 270
             ||||||||||||||| ||||||||||||| || |||||
Sbjct: 72267 ttcgatgtcgactggctcgccgagcacgcgcgccaggt 72304
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>ref|XM_479647.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1266

 Score =  129 bits (65), Expect = 6e-27
 Identities = 98/109 (89%)
 Strand = Plus / Plus

                                                                       
Query: 38  caggtggggctggtggtcgggaagctcagcgtctcctccgaccgcgccctcgtctactcc 97
           ||||||||||| || ||||| |||||||||| ||| |||||||| ||||||| |||||||
Sbjct: 79  caggtggggctcgtcgtcggcaagctcagcgcctcttccgaccgtgccctcgcctactcc 138

                                                            
Query: 98  ctgctccccacgccgcccaccgattccggcgagcccgcttgctccctcc 146
           ||  |||||||||||||||||||||||||||  ||||||||||||||||
Sbjct: 139 ctcatccccacgccgcccaccgattccggcgctcccgcttgctccctcc 187



 Score =  109 bits (55), Expect = 6e-21
 Identities = 79/87 (90%)
 Strand = Plus / Plus

                                                                       
Query: 233 ttcgatgtcgactgggtcgccgagcacgcccgacaggtgtcgaggatgccccttggagga 292
           ||||||||||||||| ||||||||||||| || ||||| ||||||||||  |||||||||
Sbjct: 244 ttcgatgtcgactggctcgccgagcacgcgcgccaggtctcgaggatgcttcttggagga 303

                                      
Query: 293 atgactgtcataggtatctacatatgg 319
           ||||| ||||||||||| |||||||||
Sbjct: 304 atgaccgtcataggtatttacatatgg 330
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>ref|NM_195260.1| Oryza sativa (japonica cultivar-group) unknown protein
           (OSJNBa0079H13.4), mRNA
          Length = 2042

 Score =  121 bits (61), Expect = 1e-24
 Identities = 97/109 (88%)
 Strand = Plus / Plus

                                                                       
Query: 38  caggtggggctggtggtcgggaagctcagcgtctcctccgaccgcgccctcgtctactcc 97
           ||||||||||| || ||||| |||||||||| ||| |||||||| ||||| | |||||||
Sbjct: 520 caggtggggctcgtcgtcggcaagctcagcgcctcttccgaccgtgcccttgcctactcc 579

                                                            
Query: 98  ctgctccccacgccgcccaccgattccggcgagcccgcttgctccctcc 146
           ||  |||||||||||||||||||||||||||  ||||||||||||||||
Sbjct: 580 ctcatccccacgccgcccaccgattccggcgctcccgcttgctccctcc 628



 Score =  117 bits (59), Expect = 2e-23
 Identities = 80/87 (91%)
 Strand = Plus / Plus

                                                                       
Query: 233 ttcgatgtcgactgggtcgccgagcacgcccgacaggtgtcgaggatgccccttggagga 292
           ||||||||||||||||||||||||||||| || ||||| ||||||||||  |||||||||
Sbjct: 694 ttcgatgtcgactgggtcgccgagcacgcgcgccaggtctcgaggatgcttcttggagga 753

                                      
Query: 293 atgactgtcataggtatctacatatgg 319
           ||||| ||||||||||| |||||||||
Sbjct: 754 atgaccgtcataggtatttacatatgg 780
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>gb|AC104616.5| Oryza sativa (japonica cultivar-group) chromosome 10 clone
             OSJNBa0079H13 map E60284SA, complete sequence
          Length = 116863

 Score =  121 bits (61), Expect = 1e-24
 Identities = 97/109 (88%)
 Strand = Plus / Plus

                                                                         
Query: 38    caggtggggctggtggtcgggaagctcagcgtctcctccgaccgcgccctcgtctactcc 97
             ||||||||||| || ||||| |||||||||| ||| |||||||| ||||| | |||||||
Sbjct: 23746 caggtggggctcgtcgtcggcaagctcagcgcctcttccgaccgtgcccttgcctactcc 23805

                                                              
Query: 98    ctgctccccacgccgcccaccgattccggcgagcccgcttgctccctcc 146
             ||  |||||||||||||||||||||||||||  ||||||||||||||||
Sbjct: 23806 ctcatccccacgccgcccaccgattccggcgctcccgcttgctccctcc 23854



 Score = 69.9 bits (35), Expect = 5e-09
 Identities = 50/55 (90%)
 Strand = Plus / Plus

                                                                    
Query: 265   acaggtgtcgaggatgccccttggaggaatgactgtcataggtatctacatatgg 319
             |||||| ||||||||||  |||||||||||||| ||||||||||| |||||||||
Sbjct: 24426 acaggtctcgaggatgcttcttggaggaatgaccgtcataggtatttacatatgg 24480



 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 36/38 (94%)
 Strand = Plus / Plus

                                                   
Query: 233   ttcgatgtcgactgggtcgccgagcacgcccgacaggt 270
             ||||||||||||||||||||||||||||| || |||||
Sbjct: 23920 ttcgatgtcgactgggtcgccgagcacgcgcgccaggt 23957
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>gb|AC105932.6| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBb0038H12
              map E60284SA, complete sequence
          Length = 139190

 Score =  121 bits (61), Expect = 1e-24
 Identities = 97/109 (88%)
 Strand = Plus / Minus

                                                                          
Query: 38     caggtggggctggtggtcgggaagctcagcgtctcctccgaccgcgccctcgtctactcc 97
              ||||||||||| || ||||| |||||||||| ||| |||||||| ||||| | |||||||
Sbjct: 128671 caggtggggctcgtcgtcggcaagctcagcgcctcttccgaccgtgcccttgcctactcc 128612

                                                               
Query: 98     ctgctccccacgccgcccaccgattccggcgagcccgcttgctccctcc 146
              ||  |||||||||||||||||||||||||||  ||||||||||||||||
Sbjct: 128611 ctcatccccacgccgcccaccgattccggcgctcccgcttgctccctcc 128563



 Score = 69.9 bits (35), Expect = 5e-09
 Identities = 50/55 (90%)
 Strand = Plus / Minus

                                                                     
Query: 265    acaggtgtcgaggatgccccttggaggaatgactgtcataggtatctacatatgg 319
              |||||| ||||||||||  |||||||||||||| ||||||||||| |||||||||
Sbjct: 127991 acaggtctcgaggatgcttcttggaggaatgaccgtcataggtatttacatatgg 127937



 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 36/38 (94%)
 Strand = Plus / Minus

                                                    
Query: 233    ttcgatgtcgactgggtcgccgagcacgcccgacaggt 270
              ||||||||||||||||||||||||||||| || |||||
Sbjct: 128497 ttcgatgtcgactgggtcgccgagcacgcgcgccaggt 128460
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score =  121 bits (61), Expect = 1e-24
 Identities = 97/109 (88%)
 Strand = Plus / Plus

                                                                           
Query: 38      caggtggggctggtggtcgggaagctcagcgtctcctccgaccgcgccctcgtctactcc 97
               ||||||||||| || ||||| |||||||||| ||| |||||||| ||||| | |||||||
Sbjct: 5795194 caggtggggctcgtcgtcggcaagctcagcgcctcttccgaccgtgcccttgcctactcc 5795253

                                                                
Query: 98      ctgctccccacgccgcccaccgattccggcgagcccgcttgctccctcc 146
               ||  |||||||||||||||||||||||||||  ||||||||||||||||
Sbjct: 5795254 ctcatccccacgccgcccaccgattccggcgctcccgcttgctccctcc 5795302



 Score = 69.9 bits (35), Expect = 5e-09
 Identities = 50/55 (90%)
 Strand = Plus / Plus

                                                                      
Query: 265     acaggtgtcgaggatgccccttggaggaatgactgtcataggtatctacatatgg 319
               |||||| ||||||||||  |||||||||||||| ||||||||||| |||||||||
Sbjct: 5795874 acaggtctcgaggatgcttcttggaggaatgaccgtcataggtatttacatatgg 5795928



 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 36/38 (94%)
 Strand = Plus / Plus

                                                     
Query: 233     ttcgatgtcgactgggtcgccgagcacgcccgacaggt 270
               ||||||||||||||||||||||||||||| || |||||
Sbjct: 5795368 ttcgatgtcgactgggtcgccgagcacgcgcgccaggt 5795405



 Score = 46.1 bits (23), Expect = 0.070
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                               
Query: 69       tctcctccgaccgcgccctcgtctactccct 99
                |||||||||||||||||| |||| |||||||
Sbjct: 18327237 tctcctccgaccgcgcccacgtccactccct 18327207
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>dbj|AK101911.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033071G07, full
           insert sequence
          Length = 1350

 Score =  121 bits (61), Expect = 1e-24
 Identities = 97/109 (88%)
 Strand = Plus / Plus

                                                                       
Query: 38  caggtggggctggtggtcgggaagctcagcgtctcctccgaccgcgccctcgtctactcc 97
           ||||||||||| || ||||| |||||||||| ||| |||||||| ||||| | |||||||
Sbjct: 217 caggtggggctcgtcgtcggcaagctcagcgcctcttccgaccgtgcccttgcctactcc 276

                                                            
Query: 98  ctgctccccacgccgcccaccgattccggcgagcccgcttgctccctcc 146
           ||  |||||||||||||||||||||||||||  ||||||||||||||||
Sbjct: 277 ctcatccccacgccgcccaccgattccggcgctcccgcttgctccctcc 325



 Score =  117 bits (59), Expect = 2e-23
 Identities = 80/87 (91%)
 Strand = Plus / Plus

                                                                       
Query: 233 ttcgatgtcgactgggtcgccgagcacgcccgacaggtgtcgaggatgccccttggagga 292
           ||||||||||||||||||||||||||||| || ||||| ||||||||||  |||||||||
Sbjct: 391 ttcgatgtcgactgggtcgccgagcacgcgcgccaggtctcgaggatgcttcttggagga 450

                                      
Query: 293 atgactgtcataggtatctacatatgg 319
           ||||| ||||||||||| |||||||||
Sbjct: 451 atgaccgtcataggtatttacatatgg 477
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>dbj|AK070874.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023074F23, full
           insert sequence
          Length = 1755

 Score =  121 bits (61), Expect = 1e-24
 Identities = 97/109 (88%)
 Strand = Plus / Plus

                                                                       
Query: 38  caggtggggctggtggtcgggaagctcagcgtctcctccgaccgcgccctcgtctactcc 97
           ||||||||||| || ||||| |||||||||| ||| |||||||| ||||| | |||||||
Sbjct: 220 caggtggggctcgtcgtcggcaagctcagcgcctcttccgaccgtgcccttgcctactcc 279

                                                            
Query: 98  ctgctccccacgccgcccaccgattccggcgagcccgcttgctccctcc 146
           ||  |||||||||||||||||||||||||||  ||||||||||||||||
Sbjct: 280 ctcatccccacgccgcccaccgattccggcgctcccgcttgctccctcc 328



 Score =  117 bits (59), Expect = 2e-23
 Identities = 80/87 (91%)
 Strand = Plus / Plus

                                                                       
Query: 233 ttcgatgtcgactgggtcgccgagcacgcccgacaggtgtcgaggatgccccttggagga 292
           ||||||||||||||||||||||||||||| || ||||| ||||||||||  |||||||||
Sbjct: 394 ttcgatgtcgactgggtcgccgagcacgcgcgccaggtctcgaggatgcttcttggagga 453

                                      
Query: 293 atgactgtcataggtatctacatatgg 319
           ||||| ||||||||||| |||||||||
Sbjct: 454 atgaccgtcataggtatttacatatgg 480
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>dbj|AK059182.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-023-G02, full
           insert sequence
          Length = 1353

 Score =  121 bits (61), Expect = 1e-24
 Identities = 97/109 (88%)
 Strand = Plus / Plus

                                                                       
Query: 38  caggtggggctggtggtcgggaagctcagcgtctcctccgaccgcgccctcgtctactcc 97
           ||||||||||| || ||||| |||||||||| ||| |||||||| ||||| | |||||||
Sbjct: 151 caggtggggctcgtcgtcggcaagctcagcgcctcttccgaccgtgcccttgcctactcc 210

                                                            
Query: 98  ctgctccccacgccgcccaccgattccggcgagcccgcttgctccctcc 146
           ||  |||||||||||||||||||||||||||  ||||||||||||||||
Sbjct: 211 ctcatccccacgccgcccaccgattccggcgctcccgcttgctccctcc 259



 Score =  117 bits (59), Expect = 2e-23
 Identities = 80/87 (91%)
 Strand = Plus / Plus

                                                                       
Query: 233 ttcgatgtcgactgggtcgccgagcacgcccgacaggtgtcgaggatgccccttggagga 292
           ||||||||||||||||||||||||||||| || ||||| ||||||||||  |||||||||
Sbjct: 325 ttcgatgtcgactgggtcgccgagcacgcgcgccaggtctcgaggatgcttcttggagga 384

                                      
Query: 293 atgactgtcataggtatctacatatgg 319
           ||||| ||||||||||| |||||||||
Sbjct: 385 atgaccgtcataggtatttacatatgg 411
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score =  121 bits (61), Expect = 1e-24
 Identities = 97/109 (88%)
 Strand = Plus / Plus

                                                                           
Query: 38      caggtggggctggtggtcgggaagctcagcgtctcctccgaccgcgccctcgtctactcc 97
               ||||||||||| || ||||| |||||||||| ||| |||||||| ||||| | |||||||
Sbjct: 5795943 caggtggggctcgtcgtcggcaagctcagcgcctcttccgaccgtgcccttgcctactcc 5796002

                                                                
Query: 98      ctgctccccacgccgcccaccgattccggcgagcccgcttgctccctcc 146
               ||  |||||||||||||||||||||||||||  ||||||||||||||||
Sbjct: 5796003 ctcatccccacgccgcccaccgattccggcgctcccgcttgctccctcc 5796051



 Score = 69.9 bits (35), Expect = 5e-09
 Identities = 50/55 (90%)
 Strand = Plus / Plus

                                                                      
Query: 265     acaggtgtcgaggatgccccttggaggaatgactgtcataggtatctacatatgg 319
               |||||| ||||||||||  |||||||||||||| ||||||||||| |||||||||
Sbjct: 5796623 acaggtctcgaggatgcttcttggaggaatgaccgtcataggtatttacatatgg 5796677



 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 36/38 (94%)
 Strand = Plus / Plus

                                                     
Query: 233     ttcgatgtcgactgggtcgccgagcacgcccgacaggt 270
               ||||||||||||||||||||||||||||| || |||||
Sbjct: 5796117 ttcgatgtcgactgggtcgccgagcacgcgcgccaggt 5796154



 Score = 46.1 bits (23), Expect = 0.070
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                               
Query: 69       tctcctccgaccgcgccctcgtctactccct 99
                |||||||||||||||||| |||| |||||||
Sbjct: 18336890 tctcctccgaccgcgcccacgtccactccct 18336860
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>ref|NM_197157.1| Oryza sativa (japonica cultivar-group) putative signal tranduction
           protein (OSJNBa0041P03.2), mRNA
          Length = 2871

 Score = 46.1 bits (23), Expect = 0.070
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                          
Query: 69  tctcctccgaccgcgccctcgtctactccct 99
           |||||||||||||||||| |||| |||||||
Sbjct: 266 tctcctccgaccgcgcccacgtccactccct 296
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>gb|AC068950.11| Oryza sativa chromosome 10 BAC OSJNBa0041P03 genomic sequence, complete
             sequence
          Length = 139614

 Score = 46.1 bits (23), Expect = 0.070
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                            
Query: 69    tctcctccgaccgcgccctcgtctactccct 99
             |||||||||||||||||| |||| |||||||
Sbjct: 23533 tctcctccgaccgcgcccacgtccactccct 23563
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>gb|AY643843.1|AY643842S2 Hordeum vulgare subsp. vulgare clones BAC 519K7 and 799C8 hardness locus
              region
          Length = 129099

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 6      acggcgtcccctcctccggc 25
              ||||||||||||||||||||
Sbjct: 120844 acggcgtcccctcctccggc 120863
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>ref|XM_527376.1| PREDICTED: Pan troglodytes ring finger protein 8 (LOC471997), mRNA
          Length = 1989

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 130  gcccgcttgctccctccgggccgc 153
            |||||||||||||| |||||||||
Sbjct: 1841 gcccgcttgctccccccgggccgc 1818
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>emb|AL353597.20| Human DNA sequence from clone RP1-153P14 on chromosome 6 Contains the
             gene for a novel protein (containing KIAA0082, FLJ22156
             and FLJ20341), three novel genes, the gene for a novel
             protein and three CpG islands, complete sequence
          Length = 162451

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 130   gcccgcttgctccctccgggccgc 153
             |||||||||||||| |||||||||
Sbjct: 19703 gcccgcttgctccccccgggccgc 19680
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>emb|AL939125.1|SCO939125 Streptomyces coelicolor A3(2) complete genome; segment 22/29
          Length = 295150

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 75     ccgaccgcgccctcgtctac 94
              ||||||||||||||||||||
Sbjct: 109969 ccgaccgcgccctcgtctac 109988
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>gb|AC010615.9| Homo sapiens chromosome 19 clone CTD-2561J22, complete sequence
          Length = 215962

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 166   caaggccaagtccaagggcgggaa 189
             |||||||||||||||||| |||||
Sbjct: 94853 caaggccaagtccaagggtgggaa 94830
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>emb|BX511270.9| Zebrafish DNA sequence from clone DKEY-35N12 in linkage group 14,
              complete sequence
          Length = 246102

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 131    cccgcttgctccctccgggc 150
              ||||||||||||||||||||
Sbjct: 157328 cccgcttgctccctccgggc 157309
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 57      ggaagctcagcgtctcctcc 76
               ||||||||||||||||||||
Sbjct: 4591167 ggaagctcagcgtctcctcc 4591186
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>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 204     cttcatccgacgcgccgccg 223
               ||||||||||||||||||||
Sbjct: 5057137 cttcatccgacgcgccgccg 5057118
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>gb|AC134523.5| Mus musculus BAC clone RP24-492M8 from 5, complete sequence
          Length = 178801

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 309    tctacatatggtcttctgaa 328
              ||||||||||||||||||||
Sbjct: 138625 tctacatatggtcttctgaa 138606


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,114,284
Number of Sequences: 3902068
Number of extensions: 2114284
Number of successful extensions: 44738
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 44396
Number of HSP's gapped (non-prelim): 342
length of query: 328
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 306
effective length of database: 17,147,199,772
effective search space: 5247043130232
effective search space used: 5247043130232
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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