Clone Information

BLAST Search Result

Clone Name	bart51e10
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	U2AF1_MOUSE (Q9D883) Splicing factor U2AF 35 kDa subunit (U2 aux...	127	1e-29
2	U2AF1_HUMAN (Q01081) Splicing factor U2AF 35 kDa subunit (U2 aux...	127	1e-29
3	U2AF1_DROME (Q94535) Splicing factor U2af 38 kDa subunit (U2 aux...	124	1e-28
4	U2AF1_PIG (Q29350) Splicing factor U2AF 35 kDa subunit (U2 auxil...	111	7e-25
5	U2AF1_SCHPO (Q09176) Splicing factor U2AF 23 kDa subunit (U2 aux...	108	6e-24
6	U2AFM_HUMAN (Q15696) U2 small nuclear ribonucleoprotein auxiliar...	81	1e-15
7	U2AFL_HUMAN (Q15695) U2 small nuclear ribonucleoprotein auxiliar...	81	1e-15
8	U2AFM_MOUSE (Q62377) U2 small nuclear ribonucleoprotein auxiliar...	79	5e-15
9	U2AFL_MOUSE (Q64707) U2 small nuclear ribonucleoprotein auxiliar...	67	2e-11
10	ZFNL6_ARATH (Q9STM4) Putative zinc finger CCCH type domain-conta...	34	0.14
11	MKRN1_MACEU (Q9TT91) Makorin-1	34	0.18
12	ZFNL5_ARATH (Q5RJC5) Zinc finger CCCH type domain-containing pro...	33	0.24
13	MKRN1_MOUSE (Q9QXP6) Makorin-1	33	0.31
14	ZFNL2_ORYSA (Q5JLB5) Zinc finger CCCH type domain-containing pro...	32	0.68
15	ZFNL4_ARATH (Q94AD9) Zinc finger CCCH type domain-containing pro...	31	1.2
16	ZFN2_ARATH (O48772) Zinc finger CCCH type domain-containing prot...	31	1.2
17	CCMM_SYNP7 (Q03513) Carbon dioxide concentrating mechanism prote...	31	1.5
18	MKRN2_BRARE (Q9DFG8) Makorin-2	30	2.0
19	ZFNL_PEA (Q9SWF9) Zinc finger CCCH type domain-containing protei...	30	2.0
20	ZFN3_ARATH (Q8L7N8) Zinc finger CCCH type domain-containing prot...	30	2.0
21	BRCA1_CANFA (Q95153) Breast cancer type 1 susceptibility protein...	30	2.0
22	ZFNL1_ORYSA (Q5NAW2) Zinc finger CCCH type domain-containing pro...	30	2.6
23	YFI7_YEAST (P43598) Hypothetical 21.8 kDa protein in UGS1-FAB1 i...	30	2.6
24	SYD_TREPA (O83950) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspar...	30	2.6
25	ZC3H3_HUMAN (Q8IXZ2) Zinc finger CCCH-type domain-containing pro...	30	2.6
26	ZFNL1_ARATH (Q84W91) Zinc finger CCCH type domain-containing pro...	30	3.4
27	TNAP3_MOUSE (Q60769) Tumor necrosis factor, alpha-induced protei...	30	3.4
28	ALF2_PEA (P46257) Fructose-bisphosphate aldolase, cytoplasmic is...	29	4.4
29	ZFN1_ARATH (Q8GXX7) Zinc finger CCCH type domain-containing prot...	29	4.4
30	ZFNL3_ARATH (Q6NPN3) Zinc finger CCCH type domain-containing pro...	29	5.8
31	CWC2_USTMA (Q4PA86) Pre-mRNA-splicing factor CWC2	28	7.6
32	MKRN4_HUMAN (Q13434) Makorin-4 (Zinc finger protein 127-Xp) (ZNF...	28	7.6
33	U2AF2_DROME (Q24562) Splicing factor U2AF 50 kDa subunit (U2 aux...	28	7.6
34	TRPD_SCHPO (O60122) Anthranilate phosphoribosyltransferase (EC 2...	28	7.6
35	MKRN2_SERQU (Q9DD48) Makorin-2 (Zinc finger protein YGHLC3HC4)	28	7.6
36	BAH_STRHY (Q01109) Acetyl-hydrolase (EC 3.1.1.-)	28	9.9
37	MKRN1_HUMAN (Q9UHC7) Makorin-1 (RING finger protein 61)	28	9.9
38	YQGC_BACSU (P54486) Hypothetical protein yqgC	28	9.9
39	CWC24_CRYNE (Q5KB05) Pre-mRNA-splicing factor CWC24	28	9.9
40	ZFNL2_ARATH (Q9SQU4) Zinc finger CCCH type domain-containing pro...	28	9.9
41	TPSD3_ABIGR (O24475) Pinene synthase, chloroplast precursor (EC ...	28	9.9

>U2AF1_MOUSE (Q9D883) Splicing factor U2AF 35 kDa subunit (U2 auxiliary factor|
           35 kDa subunit) (U2 snRNP auxiliary factor small
           subunit)
          Length = 238

 Score =  127 bits (319), Expect = 1e-29
 Identities = 57/96 (59%), Positives = 75/96 (78%), Gaps = 1/96 (1%)
 Frame = +2

Query: 152 AEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTTSPTIVLANMYQRPDMITPG 331
           AE+LASIFGTEKD+VNC FYFKIGACRHGDRCSRLHN+PT S TI L N+Y+ P   +  
Sbjct: 1   AEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIALLNIYRNPQNSSQS 60

Query: 332 VDAQGVAIAPEKMQEHFEDFYEDIYEEL-SKFGEVE 436
            D    A++  +MQEH+++F+E+++ E+  K+GEVE
Sbjct: 61  ADGLRCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVE 96

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>U2AF1_HUMAN (Q01081) Splicing factor U2AF 35 kDa subunit (U2 auxiliary factor|
           35 kDa subunit) (U2 snRNP auxiliary factor small
           subunit)
          Length = 239

 Score =  127 bits (319), Expect = 1e-29
 Identities = 57/96 (59%), Positives = 75/96 (78%), Gaps = 1/96 (1%)
 Frame = +2

Query: 152 AEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTTSPTIVLANMYQRPDMITPG 331
           AE+LASIFGTEKD+VNC FYFKIGACRHGDRCSRLHN+PT S TI L N+Y+ P   +  
Sbjct: 1   AEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIALLNIYRNPQNSSQS 60

Query: 332 VDAQGVAIAPEKMQEHFEDFYEDIYEEL-SKFGEVE 436
            D    A++  +MQEH+++F+E+++ E+  K+GEVE
Sbjct: 61  ADGLRCAVSDVEMQEHYDEFFEEVFTEMEEKYGEVE 96

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>U2AF1_DROME (Q94535) Splicing factor U2af 38 kDa subunit (U2 auxiliary factor|
           38 kDa subunit) (U2 snRNP auxiliary factor small
           subunit)
          Length = 264

 Score =  124 bits (311), Expect = 1e-28
 Identities = 56/99 (56%), Positives = 75/99 (75%), Gaps = 3/99 (3%)
 Frame = +2

Query: 149 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTTSPTIVLANMYQRPDMITP 328
           MAE+LASIFGTEKD+VNC FYFKIGACRHGDRCSR+HN+PT S T++L N+Y  P     
Sbjct: 1   MAEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRIHNKPTFSQTVLLQNLYVNPQNSAK 60

Query: 329 GVDAQGVA--IAPEKMQEHFEDFYEDIYEEL-SKFGEVE 436
             D   +   ++ E+MQEH+++F+ED++ E   K+GE+E
Sbjct: 61  SADGSHLVANVSDEEMQEHYDNFFEDVFVECEDKYGEIE 99

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>U2AF1_PIG (Q29350) Splicing factor U2AF 35 kDa subunit (U2 auxiliary factor|
           35 kDa subunit) (U2 snRNP auxiliary factor small
           subunit) (Fragment)
          Length = 81

 Score =  111 bits (278), Expect = 7e-25
 Identities = 49/81 (60%), Positives = 62/81 (76%)
 Frame = +2

Query: 152 AEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTTSPTIVLANMYQRPDMITPG 331
           AE+LASIFGTEKD+VNC FYFKIGACRHGDRCSRLHN+PT S TIVL N+Y+ P      
Sbjct: 1   AEYLASIFGTEKDKVNCSFYFKIGACRHGDRCSRLHNKPTFSQTIVLLNLYRNPQNTAQT 60

Query: 332 VDAQGVAIAPEKMQEHFEDFY 394
            D     ++  ++QEH+++F+
Sbjct: 61  ADGSHCHVSDVEVQEHYDNFF 81

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>U2AF1_SCHPO (Q09176) Splicing factor U2AF 23 kDa subunit (U2 auxiliary factor|
           23 kDa subunit) (U2 snRNP auxiliary factor small
           subunit) (U2AF23)
          Length = 216

 Score =  108 bits (270), Expect = 6e-24
 Identities = 51/96 (53%), Positives = 66/96 (68%)
 Frame = +2

Query: 149 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTTSPTIVLANMYQRPDMITP 328
           MA HLASI+GTE+D+VNC FY+KIGACRHG+RCSR H +P  S TI+  NMY+ P     
Sbjct: 1   MASHLASIYGTEQDKVNCSFYYKIGACRHGERCSRKHVKPNFSQTILCPNMYKNPIH--- 57

Query: 329 GVDAQGVAIAPEKMQEHFEDFYEDIYEELSKFGEVE 436
             +  G      ++ E F+ FYED++ E SK+GEVE
Sbjct: 58  --EPNGKKFTQRELAEQFDAFYEDMFCEFSKYGEVE 91

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>U2AFM_HUMAN (Q15696) U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa|
           subunit related-protein 2 (U2(RNU2) small nuclear RNA
           auxillary factor 1-like 2) (NY-REN-20 antigen)
          Length = 482

 Score = 81.3 bits (199), Expect = 1e-15
 Identities = 41/91 (45%), Positives = 53/91 (58%), Gaps = 7/91 (7%)
 Frame = +2

Query: 182 EKDRVNCPFYFKIGACRHGDRCSRLHNRPTTSPTIVLANMYQ-------RPDMITPGVDA 340
           EKDR NCPFY K GACR GDRCSR HN PT+SPT+++ +M+        R D   P    
Sbjct: 166 EKDRANCPFYSKTGACRFGDRCSRKHNFPTSSPTLLIKSMFTTFGMEQCRRDDYDPDASL 225

Query: 341 QGVAIAPEKMQEHFEDFYEDIYEELSKFGEV 433
           +    + E+  + F DFYED+  E    G+V
Sbjct: 226 E---YSEEETYQQFLDFYEDVLPEFKNVGKV 253

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>U2AFL_HUMAN (Q15695) U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa|
           subunit-related protein 1 (U2(RNU2) small nuclear RNA
           auxillary factor 1-like 1)
          Length = 479

 Score = 81.3 bits (199), Expect = 1e-15
 Identities = 41/91 (45%), Positives = 53/91 (58%), Gaps = 7/91 (7%)
 Frame = +2

Query: 182 EKDRVNCPFYFKIGACRHGDRCSRLHNRPTTSPTIVLANMYQ-------RPDMITPGVDA 340
           EKDR NCPFY K GACR GDRCSR HN PT+SPT+++ +M+        R D   P    
Sbjct: 171 EKDRANCPFYSKTGACRFGDRCSRKHNFPTSSPTLLIKSMFTTFGMEQCRRDDYDPDASL 230

Query: 341 QGVAIAPEKMQEHFEDFYEDIYEELSKFGEV 433
           +    + E+  + F DFYED+  E    G+V
Sbjct: 231 E---YSEEETYQQFLDFYEDVLPEFKNVGKV 258

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>U2AFM_MOUSE (Q62377) U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa|
           subunit related-protein 2 (U2(RNU2) small nuclear RNA
           auxillary factor 1-like 2)
          Length = 462

 Score = 79.0 bits (193), Expect = 5e-15
 Identities = 40/91 (43%), Positives = 52/91 (57%), Gaps = 7/91 (7%)
 Frame = +2

Query: 182 EKDRVNCPFYFKIGACRHGDRCSRLHNRPTTSPTIVLANMYQ-------RPDMITPGVDA 340
           EKDR NCPFY K GACR GDRCSR HN PT+SPT+++  M+        R D   P    
Sbjct: 170 EKDRANCPFYSKTGACRFGDRCSRKHNFPTSSPTLLIKGMFTTFGMEQCRRDDYDPD--- 226

Query: 341 QGVAIAPEKMQEHFEDFYEDIYEELSKFGEV 433
             +  + E++ + F DFY D+  E    G+V
Sbjct: 227 SSLEFSEEEIYQQFLDFYYDVLPEFKSVGKV 257

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>U2AFL_MOUSE (Q64707) U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa|
           subunit-related protein 1 (U2(RNU2) small nuclear RNA
           auxillary factor 1-like 1) (SP2)
          Length = 428

 Score = 67.0 bits (162), Expect = 2e-11
 Identities = 35/88 (39%), Positives = 50/88 (56%), Gaps = 4/88 (4%)
 Frame = +2

Query: 182 EKDRVNCPFYFKIGACRHGDRCSRLHNRPTTSPTIVLANMYQRPDMITPGVD----AQGV 349
           EK R +CPFY K GACR G+RCSR H+ PT+SPT+++ +M+    M     D       +
Sbjct: 157 EKYRPSCPFYNKTGACRFGNRCSRKHDFPTSSPTLLVKSMFTTFGMEQCRRDDYDSDANL 216

Query: 350 AIAPEKMQEHFEDFYEDIYEELSKFGEV 433
             + E+  + F DFY D+  E    G+V
Sbjct: 217 EYSEEETYQQFLDFYHDVLPEFKNVGKV 244

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>ZFNL6_ARATH (Q9STM4) Putative zinc finger CCCH type domain-containing protein|
           ZFN-like 6
          Length = 448

 Score = 34.3 bits (77), Expect = 0.14
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 194 VNCPFYFKIGACRHGDRCSRLHNRPTT 274
           V CP+Y + G+C++G  C   H  PTT
Sbjct: 208 VECPYYMRNGSCKYGAECKFNHPDPTT 234



 Score = 31.2 bits (69), Expect = 1.2
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +2

Query: 194 VNCPFYFKIGACRHGDRCSRLHNRP 268
           ++C +YF+ G C++G+ C   H  P
Sbjct: 162 IDCKYYFRTGGCKYGETCRFNHTIP 186

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>MKRN1_MACEU (Q9TT91) Makorin-1|
          Length = 478

 Score = 33.9 bits (76), Expect = 0.18
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +2

Query: 209 YFKIGACRHGDRCSRLHNRPTTSPTIVLANMYQRPDM 319
           Y++ G C +GDRC   H +P     +  AN+  + D+
Sbjct: 88  YYQRGCCAYGDRCRYEHTKPLKREEVTAANLAAKSDL 124

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>ZFNL5_ARATH (Q5RJC5) Zinc finger CCCH type domain-containing protein ZFN-like 5|
          Length = 435

 Score = 33.5 bits (75), Expect = 0.24
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
 Frame = +2

Query: 194 VNCPFYFKIGACRHGDRC----SRLHNRPTTSPTIVLANMYQRP 313
           + C +YF+ G C++G+ C     + HN P + P +    +  RP
Sbjct: 152 MECKYYFRTGGCKYGESCRFSHMKEHNSPASVPELNFLGLPIRP 195



 Score = 30.8 bits (68), Expect = 1.5
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +2

Query: 200 CPFYFKIGACRHGDRCSRLHNRPT 271
           CPFY + G+C+ G  C   H  PT
Sbjct: 200 CPFYMRNGSCKFGSDCKFNHPDPT 223



 Score = 30.0 bits (66), Expect = 2.6
 Identities = 9/35 (25%), Positives = 18/35 (51%)
 Frame = +2

Query: 155 EHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLH 259
           + +  ++    D  +C FY + G+C++G  C   H
Sbjct: 92  KRMMMVYPVRPDSEDCSFYMRTGSCKYGSSCKFNH 126

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>MKRN1_MOUSE (Q9QXP6) Makorin-1|
          Length = 481

 Score = 33.1 bits (74), Expect = 0.31
 Identities = 14/52 (26%), Positives = 24/52 (46%)
 Frame = +2

Query: 209 YFKIGACRHGDRCSRLHNRPTTSPTIVLANMYQRPDMITPGVDAQGVAIAPE 364
           YF+ G C +GDRC   H++P     +   ++  +P +      + GV    E
Sbjct: 92  YFQRGYCVYGDRCRYEHSKPLKQEEVTATDLSAKPSLAASSSLSSGVGSLAE 143

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>ZFNL2_ORYSA (Q5JLB5) Zinc finger CCCH type domain-containing protein ZFN-like 2|
          Length = 439

 Score = 32.0 bits (71), Expect = 0.68
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +2

Query: 167 SIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTTSPT 283
           ++F    D+  C +Y K G C+ G  C   H R  + PT
Sbjct: 327 NVFPERPDQPECQYYMKTGDCKFGAVCKFHHPRVRSMPT 365



 Score = 28.9 bits (63), Expect = 5.8
 Identities = 16/54 (29%), Positives = 22/54 (40%)
 Frame = +2

Query: 200 CPFYFKIGACRHGDRCSRLHNRPTTSPTIVLANMYQRPDMITPGVDAQGVAIAP 361
           C +Y K G C++G+ C   H      P +  A    R   I P V +   A  P
Sbjct: 177 CAYYLKTGQCKYGNTCKFHH------PELFNAMASSRGSPIYPSVHSSATAGPP 224

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>ZFNL4_ARATH (Q94AD9) Zinc finger CCCH type domain-containing protein ZFN-like 4|
          Length = 404

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 14/42 (33%), Positives = 18/42 (42%)
 Frame = +2

Query: 134 SAPRTMAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLH 259
           SA   MA  L        D+  C F+   G C++GD C   H
Sbjct: 245 SASMAMAVALNRGLSESSDQPECRFFMNTGTCKYGDDCKYSH 286



 Score = 29.6 bits (65), Expect = 3.4
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +2

Query: 200 CPFYFKIGACRHGDRCSRLHNRP 268
           CP+Y + G CR G  C   H +P
Sbjct: 141 CPYYLRTGTCRFGVACKFHHPQP 163



 Score = 29.3 bits (64), Expect = 4.4
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +2

Query: 197 NCPFYFKIGACRHGDRCSRLHNRPTTSPTIVLANMYQRPDMI 322
           +C FY + G C +G  C   +N PT  P  V     + P+ I
Sbjct: 52  DCQFYLRTGLCGYGSSCR--YNHPTHLPQDVAYYKEELPERI 91

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>ZFN2_ARATH (O48772) Zinc finger CCCH type domain-containing protein ZFN2|
          Length = 453

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +2

Query: 200 CPFYFKIGACRHGDRCSRLHNRPTTSPT 283
           CP+Y + G CR G  C   H  P + P+
Sbjct: 135 CPYYMQTGLCRFGVACKFHHPHPHSQPS 162



 Score = 30.4 bits (67), Expect = 2.0
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = +2

Query: 134 SAPRTMAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLH--NRPTTSPTIVL 292
           S+  ++A  + S   +  +R  C F+   G C++GD C   H   R   SP  +L
Sbjct: 245 SSSASVAVTVTSHHHSFSERAECRFFMNTGTCKYGDDCKYSHPKERLLQSPPTLL 299

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>CCMM_SYNP7 (Q03513) Carbon dioxide concentrating mechanism protein ccmM|
          Length = 539

 Score = 30.8 bits (68), Expect = 1.5
 Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
 Frame = -2

Query: 294 ASTIVGDVVGLLCRREQRSP*RQAPILK*KGQLTLSF-SVPKIEAKCSAIVLGALQIMLK 118
           +S + G V GLL +  + S    A +   +   T S+ S+P +  +  A VL AL+ +L+
Sbjct: 456 SSDVAGQVRGLLAQGYRIS----AEVADKRRFQTSSWQSLPALSGQSEATVLPALESILQ 511

Query: 117 LGSGRTAAVVSIDPAA 70
              G+   ++ IDPAA
Sbjct: 512 EHKGKYVRLIGIDPAA 527

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>MKRN2_BRARE (Q9DFG8) Makorin-2|
          Length = 414

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +2

Query: 209 YFKIGACRHGDRCSRLHNRPTTSPTIVLANMYQR 310
           YF  G CR G RC   H+  T+ P+  +   YQR
Sbjct: 10  YFLHGVCREGSRCLFSHDLTTSKPS-TICKYYQR 42



 Score = 28.9 bits (63), Expect = 5.8
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +2

Query: 179 TEKDRVNCPFYFKIGACRHGDRCSRLHNRP 268
           T K    C +Y + GAC +GDRC   H +P
Sbjct: 30  TSKPSTICKYYQR-GACAYGDRCRYDHIKP 58

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>ZFNL_PEA (Q9SWF9) Zinc finger CCCH type domain-containing protein ZFN-like|
          Length = 417

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 14/38 (36%), Positives = 17/38 (44%)
 Frame = +2

Query: 167 SIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTTSP 280
           +IF    D+  C FY K G C+ G  C   H R    P
Sbjct: 273 NIFPERPDQPECQFYMKTGDCKFGAVCRFHHPRERQIP 310

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>ZFN3_ARATH (Q8L7N8) Zinc finger CCCH type domain-containing protein ZFN3|
          Length = 375

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = +2

Query: 167 SIFGTEKDRVNCPFYFKIGACRHGDRCSRLH--NRPTTSPTIVLANM 301
           ++F     +  C FY K G C+ G  C   H  +R T  P  VL+++
Sbjct: 238 NVFPERPGQPECQFYMKTGDCKFGTVCKFHHPRDRQTPPPDCVLSSV 284

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>BRCA1_CANFA (Q95153) Breast cancer type 1 susceptibility protein homolog|
          Length = 1878

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = +2

Query: 50   SPARAREAA--GSIETTAAVLPLPSFSII*SAPRTMAEHLASIFGTEK 187
            S  RA E A   S+ T+ + L LP F +  SA  T A H+AS  G  K
Sbjct: 1583 SSHRASELAHVSSMPTSTSALKLPQFQVEESAKSTAAVHIASTAGYNK 1630

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>ZFNL1_ORYSA (Q5NAW2) Zinc finger CCCH type domain-containing protein ZFN-like 1|
          Length = 476

 Score = 30.0 bits (66), Expect = 2.6
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 197 NCPFYFKIGACRHGDRCSRLHNR 265
           +C +Y + GAC  GDRC   H R
Sbjct: 64  DCVYYLRTGACGFGDRCRYNHPR 86

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>YFI7_YEAST (P43598) Hypothetical 21.8 kDa protein in UGS1-FAB1 intergenic|
           region
          Length = 195

 Score = 30.0 bits (66), Expect = 2.6
 Identities = 21/66 (31%), Positives = 27/66 (40%)
 Frame = +2

Query: 233 HGDRCSRLHNRPTTSPTIVLANMYQRPDMITPGVDAQGVAIAPEKMQEHFEDFYEDIYEE 412
           H   CSR  NRP    + +  N       +  G   Q       K    +EDF +DIY +
Sbjct: 131 HTPICSRAGNRPIFKNSYLDNNSNGNSARVPHGSPPQ--LGTRRKSSFKYEDFKKDIYNQ 188

Query: 413 LSKFGE 430
           L  FGE
Sbjct: 189 LHMFGE 194

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>SYD_TREPA (O83950) Aspartyl-tRNA synthetase (EC 6.1.1.12) (Aspartate--tRNA|
           ligase) (AspRS)
          Length = 602

 Score = 30.0 bits (66), Expect = 2.6
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = -2

Query: 141 GALQIMLKLGSGRTAAVVSIDPAASLARAGEA-HLTWLRRRGGAEE 7
           G+++ ++  G  R  +   I+   S+ARA EA HL WL+  GG  E
Sbjct: 336 GSIRALVLPGKARCYSRRQIEALESIARAHEAHHLFWLKATGGGLE 381

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>ZC3H3_HUMAN (Q8IXZ2) Zinc finger CCCH-type domain-containing protein 3|
          Length = 948

 Score = 30.0 bits (66), Expect = 2.6
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 182 EKDRVNCPFYFKIGACRHGDRCSRLHN 262
           EK +  C +Y + G C  G+RC  +H+
Sbjct: 667 EKRKEYCMYYNRFGRCNRGERCPYIHD 693

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>ZFNL1_ARATH (Q84W91) Zinc finger CCCH type domain-containing protein ZFN-like 1|
          Length = 468

 Score = 29.6 bits (65), Expect = 3.4
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +2

Query: 197 NCPFYFKIGACRHGDRCSRLHNRPTTSPTIVLANMYQRPD 316
           +C +Y + G C +G+RC   H R   S    +    Q P+
Sbjct: 50  DCAYYMRTGVCGYGNRCRYNHPRDRASVEATVRATGQYPE 89

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>TNAP3_MOUSE (Q60769) Tumor necrosis factor, alpha-induced protein 3 (EC|
           3.-.-.-) (Putative DNA binding protein A20) (Zinc finger
           protein A20)
          Length = 775

 Score = 29.6 bits (65), Expect = 3.4
 Identities = 13/41 (31%), Positives = 17/41 (41%)
 Frame = +1

Query: 61  RQGSXXXXXXXXXXSPAPELQHNLKCSQNNGGTLGFNFWHG 183
           R+            SPAP  Q+N+ C     GTLG   + G
Sbjct: 617 RENKQSVTASAKAGSPAPRFQNNVPCLGRECGTLGSTMFEG 657

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>ALF2_PEA (P46257) Fructose-bisphosphate aldolase, cytoplasmic isozyme 2 (EC|
           4.1.2.13)
          Length = 359

 Score = 29.3 bits (64), Expect = 4.4
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +2

Query: 284 IVLANMYQRPDMITPGVDAQGVAIAPEKMQEH 379
           ++L     +P+M+TPG DA    +APE + EH
Sbjct: 218 VILEGTLLKPNMVTPGSDAP--KVAPEVIAEH 247

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>ZFN1_ARATH (Q8GXX7) Zinc finger CCCH type domain-containing protein ZFN1|
          Length = 397

 Score = 29.3 bits (64), Expect = 4.4
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = +2

Query: 167 SIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTTSP 280
           ++F     +  C FY K G C+ G  C   H R   +P
Sbjct: 269 NVFPERPGQPECQFYMKTGDCKFGTVCKFHHPRDRQAP 306

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>ZFNL3_ARATH (Q6NPN3) Zinc finger CCCH type domain-containing protein ZFN-like 3|
          Length = 465

 Score = 28.9 bits (63), Expect = 5.8
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +2

Query: 173 FGTEKDRVNCPFYFKIGACRHGDRCSRLHNR 265
           F    D  +C +Y + G C +G RC   H R
Sbjct: 48  FPERPDEPDCIYYLRTGVCGYGSRCRFNHPR 78

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>CWC2_USTMA (Q4PA86) Pre-mRNA-splicing factor CWC2|
          Length = 480

 Score = 28.5 bits (62), Expect = 7.6
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +2

Query: 188 DRVNCPFYFKIGACRHGDRCSRLHNRP 268
           + V C  +F  G C HG  C+ LH  P
Sbjct: 124 EAVYCCIHFARGCCPHGAECNFLHRLP 150

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>MKRN4_HUMAN (Q13434) Makorin-4 (Zinc finger protein 127-Xp) (ZNF127-Xp) (RING|
           finger protein 64)
          Length = 485

 Score = 28.5 bits (62), Expect = 7.6
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 209 YFKIGACRHGDRCSRLHNRP 268
           YF+ G C +GDRC   H++P
Sbjct: 127 YFQRGCCVYGDRCRCEHSKP 146

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>U2AF2_DROME (Q24562) Splicing factor U2AF 50 kDa subunit (U2 auxiliary factor|
           50 kDa subunit) (U2 snRNP auxiliary factor large
           subunit)
          Length = 416

 Score = 28.5 bits (62), Expect = 7.6
 Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
 Frame = +2

Query: 353 IAPEKM--QEHFEDFYEDIYEELSKFGEVET 439
           + P+++  +E +ED  EDI EE +K+G V +
Sbjct: 326 VTPDELRDEEEYEDILEDIKEECTKYGVVRS 356

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>TRPD_SCHPO (O60122) Anthranilate phosphoribosyltransferase (EC 2.4.2.18)|
          Length = 354

 Score = 28.5 bits (62), Expect = 7.6
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = -2

Query: 126 MLKLGSGRTAAVVSIDPAASLARAGEAHLTWLRRRG 19
           +LKLG+GR+  V   +    ++ AG  H TWL R G
Sbjct: 221 LLKLGAGRSLVVCGEEGLDEISPAGPTH-TWLVRDG 255

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>MKRN2_SERQU (Q9DD48) Makorin-2 (Zinc finger protein YGHLC3HC4)|
          Length = 423

 Score = 28.5 bits (62), Expect = 7.6
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +2

Query: 209 YFKIGACRHGDRCSRLHNRPTTSPTIVLANMYQR 310
           YF  G CR G RC   H+   + P+  +   YQR
Sbjct: 10  YFLHGVCREGSRCLFSHDLNNSKPS-TICKFYQR 42

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>BAH_STRHY (Q01109) Acetyl-hydrolase (EC 3.1.1.-)|
          Length = 299

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -2

Query: 156 SAIVLGALQIMLKLGSGRTAAVVSIDPAASLARAGEAHLT 37
           + + + ALQ +   G+   AA V I P A LA  G +H T
Sbjct: 146 AGLAVAALQALRDAGTPLPAAAVCISPWADLACEGASHTT 185

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>MKRN1_HUMAN (Q9UHC7) Makorin-1 (RING finger protein 61)|
          Length = 482

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 209 YFKIGACRHGDRCSRLHNRP 268
           YF+ G C +GDRC   H++P
Sbjct: 92  YFQRGYCIYGDRCRYEHSKP 111



 Score = 28.1 bits (61), Expect = 9.9
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +2

Query: 209 YFKIGACRHGDRCSRLHNRPTTSPTIVLANMYQR 310
           YF  G C+ GD C   H+  + SP  V+   +QR
Sbjct: 63  YFMHGVCKEGDNCRYSHDL-SDSPYSVVCKYFQR 95

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>YQGC_BACSU (P54486) Hypothetical protein yqgC|
          Length = 160

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -2

Query: 366 FSGAIATPWASTPGVIISGRWYMLASTIVGDVVGLLC 256
           F G+ A  W ST G++I      +A  I+G  +G +C
Sbjct: 77  FGGSKAAIWGSTIGLLIGPFVIPVAGIILGPFIGAVC 113

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>CWC24_CRYNE (Q5KB05) Pre-mRNA-splicing factor CWC24|
          Length = 329

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +2

Query: 134 SAPRTMAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNR 265
           S P     H+ +I   +     C  Y + G C +GD C  LH+R
Sbjct: 161 SGPIKATSHVRTITLMDYQPDVCKDYKETGFCGYGDSCKFLHDR 204

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>ZFNL2_ARATH (Q9SQU4) Zinc finger CCCH type domain-containing protein ZFN-like 2|
          Length = 437

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 188 DRVNCPFYFKIGACRHGDRCSRLHNR 265
           D  +C +Y + G C +G RC   H R
Sbjct: 31  DEPDCIYYLRTGVCGYGSRCRFNHPR 56

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>TPSD3_ABIGR (O24475) Pinene synthase, chloroplast precursor (EC 4.2.3.14)|
           (Beta-geraniolene synthase) ((-)-(1S,5S)-pinene
           synthase) (Agg-pin1)
          Length = 628

 Score = 28.1 bits (61), Expect = 9.9
 Identities = 14/64 (21%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
 Frame = +2

Query: 224 ACRHGDRCSRLHNRPTTSPTIVLANMYQRPDMITPGVDAQGVAIAPEK-MQEHFEDFYED 400
           +C H    S  H     S TI    M +R   ITP +      +  +  ++    DF+ +
Sbjct: 13  SCLHKSLISSTHELKALSRTIPALGMSRRGKSITPSISMSSTTVVTDDGVRRRMGDFHSN 72

Query: 401 IYEE 412
           ++++
Sbjct: 73  LWDD 76


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,892,704
Number of Sequences: 219361
Number of extensions: 1204110
Number of successful extensions: 4563
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 4254
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4557
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2570413340
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result