ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart51e05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1S6A18_HUMAN (Q96N87) Sodium- and chloride-dependent transporter ... 29 5.2
2RNPA_THEFI (Q7X5L2) Ribonuclease P protein component (EC 3.1.26.... 29 5.2
3CHLD_SYNY3 (P72772) Magnesium-chelatase subunit chlD (EC 6.6.1.1... 29 6.8
4PP2B2_DROME (Q27889) Serine/threonine-protein phosphatase 2B cat... 28 8.9
5LAMC1_DROME (P15215) Laminin gamma-1 chain precursor (Laminin B2... 28 8.9

>S6A18_HUMAN (Q96N87) Sodium- and chloride-dependent transporter XTRP2 (Solute|
           carrier family 6 member 18)
          Length = 628

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 133 VLMLLPLIYAPVLPLIRIGLRHNPVWRDR 219
           +L LLP+++ PV  L ++  R    WRDR
Sbjct: 573 LLSLLPVLWVPVAALAQLLTRRRRTWRDR 601



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>RNPA_THEFI (Q7X5L2) Ribonuclease P protein component (EC 3.1.26.5) (RNaseP|
           protein) (RNase P protein) (Protein C5)
          Length = 240

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 16/30 (53%), Positives = 18/30 (60%)
 Frame = -3

Query: 249 ECAGEDAVEEAVPPHRVMPQPDPDEGQNGG 160
           E A   A E A PPHRV+P P P   Q+GG
Sbjct: 30  EGAEAQAAEGAPPPHRVIP-PHPGLRQDGG 58



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>CHLD_SYNY3 (P72772) Magnesium-chelatase subunit chlD (EC 6.6.1.1)|
           (Mg-protoporphyrin IX chelatase) (Mg-chelatase subunit
           D)
          Length = 676

 Score = 28.9 bits (63), Expect = 6.8
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 213 PPHRVMPQPDPDEGQNGGVDEREQHQ 136
           PP +  P P P + Q+ G DE+E  Q
Sbjct: 335 PPEQAPPPPPPPQNQDEGKDEQEDQQ 360



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>PP2B2_DROME (Q27889) Serine/threonine-protein phosphatase 2B catalytic subunit|
           2, (EC 3.1.3.16) (Calmodulin-dependent calcineurin A2
           subunit)
          Length = 570

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -3

Query: 270 YEVGAMYECAGEDAVEEAVPPHRVMPQPDPDEGQN 166
           +++ +  E  G DAV E +PP R  P P P E  N
Sbjct: 523 HKITSFAEAKGLDAVNERMPPRRDQP-PTPSEDPN 556



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>LAMC1_DROME (P15215) Laminin gamma-1 chain precursor (Laminin B2 chain)|
          Length = 1639

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
 Frame = +3

Query: 252 TWHLPHIRTVRRGEQVNHALQSSSYEFATAIYDD--CKSTIDEGVTGFSY 395
           T+ LP  R +R+GE   HAL +S Y   + + D     ST++   +G ++
Sbjct: 198 TYSLPDSRAIRKGEGEAHALCTSEYSDISPLRDGEIAFSTLEGRPSGINF 247


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,298,605
Number of Sequences: 219361
Number of extensions: 836390
Number of successful extensions: 1998
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1967
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1997
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3014947676
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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