ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart51e01 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 289 bits (146), Expect = 3e-75 Identities = 230/258 (89%) Strand = Plus / Minus Query: 89 catgggcggcctctccatgggccaggccttcgtgcaggcccccgagcatcgcaccaagcc 148 |||||| ||||||||||||| ||||||||||||||||||||||||||| ||| ||||||| Sbjct: 9161110 catgggtggcctctccatggaccaggccttcgtgcaggcccccgagcaccgcgccaagcc 9161051 Query: 149 gaccctcgccgacgcggacggcatcccggtcatcgacctctcccctctcgccgccggcga 208 | || ||||||| || ||||||||||||||||||||||||||||||||| ||||| ||| Sbjct: 9161050 gtccgtcgccgaggccgacggcatcccggtcatcgacctctcccctctcttcgccgccga 9160991 Query: 209 cgaggccggcgtggacgcgctcgcggccgaggtgggcagggcgagccgggactgggggtt 268 | || | |||||||||||||||||||||||| || |||||||||| ||||||||| || Sbjct: 9160990 tggggtggacgtggacgcgctcgcggccgaggtcgggagggcgagccaggactggggctt 9160931 Query: 269 cttcgtggtggtgcgccacggcgtgccggcggagacggtggcgcgcgcgctggaggcgca 328 ||||||||||||||||||||||||||||| |||| ||||||| | ||| ||||||||| Sbjct: 9160930 cttcgtggtggtgcgccacggcgtgccggaggaggtggtggcgagggcggcggaggcgca 9160871 Query: 329 gagggccttcttcgcgct 346 |||||| ||||||||||| Sbjct: 9160870 gagggcgttcttcgcgct 9160853 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 200 cgccggcgacgaggccggcg 219 |||||||||||||||||||| Sbjct: 3063850 cgccggcgacgaggccggcg 3063869
>dbj|AP005799.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0012K14 Length = 155544 Score = 289 bits (146), Expect = 3e-75 Identities = 230/258 (89%) Strand = Plus / Minus Query: 89 catgggcggcctctccatgggccaggccttcgtgcaggcccccgagcatcgcaccaagcc 148 |||||| ||||||||||||| ||||||||||||||||||||||||||| ||| ||||||| Sbjct: 96604 catgggtggcctctccatggaccaggccttcgtgcaggcccccgagcaccgcgccaagcc 96545 Query: 149 gaccctcgccgacgcggacggcatcccggtcatcgacctctcccctctcgccgccggcga 208 | || ||||||| || ||||||||||||||||||||||||||||||||| ||||| ||| Sbjct: 96544 gtccgtcgccgaggccgacggcatcccggtcatcgacctctcccctctcttcgccgccga 96485 Query: 209 cgaggccggcgtggacgcgctcgcggccgaggtgggcagggcgagccgggactgggggtt 268 | || | |||||||||||||||||||||||| || |||||||||| ||||||||| || Sbjct: 96484 tggggtggacgtggacgcgctcgcggccgaggtcgggagggcgagccaggactggggctt 96425 Query: 269 cttcgtggtggtgcgccacggcgtgccggcggagacggtggcgcgcgcgctggaggcgca 328 ||||||||||||||||||||||||||||| |||| ||||||| | ||| ||||||||| Sbjct: 96424 cttcgtggtggtgcgccacggcgtgccggaggaggtggtggcgagggcggcggaggcgca 96365 Query: 329 gagggccttcttcgcgct 346 |||||| ||||||||||| Sbjct: 96364 gagggcgttcttcgcgct 96347
>ref|XM_480999.1| Oryza sativa (japonica cultivar-group), mRNA Length = 939 Score = 287 bits (145), Expect = 1e-74 Identities = 229/257 (89%) Strand = Plus / Plus Query: 90 atgggcggcctctccatgggccaggccttcgtgcaggcccccgagcatcgcaccaagccg 149 ||||| ||||||||||||| ||||||||||||||||||||||||||| ||| |||||||| Sbjct: 1 atgggtggcctctccatggaccaggccttcgtgcaggcccccgagcaccgcgccaagccg 60 Query: 150 accctcgccgacgcggacggcatcccggtcatcgacctctcccctctcgccgccggcgac 209 || ||||||| || ||||||||||||||||||||||||||||||||| ||||| ||| Sbjct: 61 tccgtcgccgaggccgacggcatcccggtcatcgacctctcccctctcttcgccgccgat 120 Query: 210 gaggccggcgtggacgcgctcgcggccgaggtgggcagggcgagccgggactgggggttc 269 | || | |||||||||||||||||||||||| || |||||||||| ||||||||| ||| Sbjct: 121 ggggtggacgtggacgcgctcgcggccgaggtcgggagggcgagccaggactggggcttc 180 Query: 270 ttcgtggtggtgcgccacggcgtgccggcggagacggtggcgcgcgcgctggaggcgcag 329 |||||||||||||||||||||||||||| |||| ||||||| | ||| |||||||||| Sbjct: 181 ttcgtggtggtgcgccacggcgtgccggaggaggtggtggcgagggcggcggaggcgcag 240 Query: 330 agggccttcttcgcgct 346 ||||| ||||||||||| Sbjct: 241 agggcgttcttcgcgct 257
>gb|AC107206.4| Oryza sativa chromosome 3 BAC OSJNBa0063J18 genomic sequence, complete sequence Length = 154558 Score = 285 bits (144), Expect = 5e-74 Identities = 246/278 (88%), Gaps = 9/278 (3%) Strand = Plus / Minus Query: 88 ccatgggcggcctctccatgggccaggccttcgtgcaggcccccgagcatcgcaccaagc 147 ||||||||||||||||||||| |||||| |||||||||||||||||||| ||| ||||| Sbjct: 96128 ccatgggcggcctctccatggaccaggcgttcgtgcaggcccccgagcaccgccccaagg 96069 Query: 148 cgaccctcgccgacgcggacggcatcccggtcatcgacctctcccctctc---gccgccg 204 || || ||||||| || ||||||||||||||||||||||||||||||||| ||||||| Sbjct: 96068 cgtccgtcgccgaggccgacggcatcccggtcatcgacctctcccctctcctcgccgccg 96009 Query: 205 gcga---cgaggccggcg---tggacgcgctcgcggccgaggtgggcagggcgagccggg 258 |||| ||| |||| || |||||||||||||||| ||||| || ||||||||||||| Sbjct: 96008 gcgatggcgacgccgacggggtggacgcgctcgcggcggaggtcgggagggcgagccggg 95949 Query: 259 actgggggttcttcgtggtggtgcgccacggcgtgccggcggagacggtggcgcgcgcgc 318 ||||||| ||||||||||||||||||||||| ||||| |||||| |||||||||||||| Sbjct: 95948 actggggcttcttcgtggtggtgcgccacggtgtgcccgcggaggcggtggcgcgcgcgg 95889 Query: 319 tggaggcgcagagggccttcttcgcgctgccggcggag 356 ||||||||||||| | ||||||||||||||| ||||| Sbjct: 95888 cggaggcgcagaggacgttcttcgcgctgccgccggag 95851
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 285 bits (144), Expect = 5e-74 Identities = 246/278 (88%), Gaps = 9/278 (3%) Strand = Plus / Minus Query: 88 ccatgggcggcctctccatgggccaggccttcgtgcaggcccccgagcatcgcaccaagc 147 ||||||||||||||||||||| |||||| |||||||||||||||||||| ||| ||||| Sbjct: 23259647 ccatgggcggcctctccatggaccaggcgttcgtgcaggcccccgagcaccgccccaagg 23259588 Query: 148 cgaccctcgccgacgcggacggcatcccggtcatcgacctctcccctctc---gccgccg 204 || || ||||||| || ||||||||||||||||||||||||||||||||| ||||||| Sbjct: 23259587 cgtccgtcgccgaggccgacggcatcccggtcatcgacctctcccctctcctcgccgccg 23259528 Query: 205 gcga---cgaggccggcg---tggacgcgctcgcggccgaggtgggcagggcgagccggg 258 |||| ||| |||| || |||||||||||||||| ||||| || ||||||||||||| Sbjct: 23259527 gcgatggcgacgccgacggggtggacgcgctcgcggcggaggtcgggagggcgagccggg 23259468 Query: 259 actgggggttcttcgtggtggtgcgccacggcgtgccggcggagacggtggcgcgcgcgc 318 ||||||| ||||||||||||||||||||||| ||||| |||||| |||||||||||||| Sbjct: 23259467 actggggcttcttcgtggtggtgcgccacggtgtgcccgcggaggcggtggcgcgcgcgg 23259408 Query: 319 tggaggcgcagagggccttcttcgcgctgccggcggag 356 ||||||||||||| | ||||||||||||||| ||||| Sbjct: 23259407 cggaggcgcagaggacgttcttcgcgctgccgccggag 23259370 Score = 52.0 bits (26), Expect = 0.001 Identities = 32/34 (94%) Strand = Plus / Minus Query: 155 cgccgacgcggacggcatcccggtcatcgacctc 188 ||||||||| |||| ||||||||||||||||||| Sbjct: 27290619 cgccgacgccgacgccatcccggtcatcgacctc 27290586 Score = 46.1 bits (23), Expect = 0.077 Identities = 26/27 (96%) Strand = Plus / Minus Query: 291 gtgccggcggagacggtggcgcgcgcg 317 |||||||||||| |||||||||||||| Sbjct: 30317725 gtgccggcggaggcggtggcgcgcgcg 30317699 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 287 cggcgtgccggcggagacggtggcg 311 ||||||||||||||||| ||||||| Sbjct: 12367814 cggcgtgccggcggagagggtggcg 12367838 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 196 tcgccgccggcgacgaggccg 216 ||||||||||||||||||||| Sbjct: 3487748 tcgccgccggcgacgaggccg 3487728
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 285 bits (144), Expect = 5e-74 Identities = 246/278 (88%), Gaps = 9/278 (3%) Strand = Plus / Minus Query: 88 ccatgggcggcctctccatgggccaggccttcgtgcaggcccccgagcatcgcaccaagc 147 ||||||||||||||||||||| |||||| |||||||||||||||||||| ||| ||||| Sbjct: 23252675 ccatgggcggcctctccatggaccaggcgttcgtgcaggcccccgagcaccgccccaagg 23252616 Query: 148 cgaccctcgccgacgcggacggcatcccggtcatcgacctctcccctctc---gccgccg 204 || || ||||||| || ||||||||||||||||||||||||||||||||| ||||||| Sbjct: 23252615 cgtccgtcgccgaggccgacggcatcccggtcatcgacctctcccctctcctcgccgccg 23252556 Query: 205 gcga---cgaggccggcg---tggacgcgctcgcggccgaggtgggcagggcgagccggg 258 |||| ||| |||| || |||||||||||||||| ||||| || ||||||||||||| Sbjct: 23252555 gcgatggcgacgccgacggggtggacgcgctcgcggcggaggtcgggagggcgagccggg 23252496 Query: 259 actgggggttcttcgtggtggtgcgccacggcgtgccggcggagacggtggcgcgcgcgc 318 ||||||| ||||||||||||||||||||||| ||||| |||||| |||||||||||||| Sbjct: 23252495 actggggcttcttcgtggtggtgcgccacggtgtgcccgcggaggcggtggcgcgcgcgg 23252436 Query: 319 tggaggcgcagagggccttcttcgcgctgccggcggag 356 ||||||||||||| | ||||||||||||||| ||||| Sbjct: 23252435 cggaggcgcagaggacgttcttcgcgctgccgccggag 23252398 Score = 52.0 bits (26), Expect = 0.001 Identities = 32/34 (94%) Strand = Plus / Minus Query: 155 cgccgacgcggacggcatcccggtcatcgacctc 188 ||||||||| |||| ||||||||||||||||||| Sbjct: 27381942 cgccgacgccgacgccatcccggtcatcgacctc 27381909 Score = 46.1 bits (23), Expect = 0.077 Identities = 26/27 (96%) Strand = Plus / Minus Query: 291 gtgccggcggagacggtggcgcgcgcg 317 |||||||||||| |||||||||||||| Sbjct: 30409147 gtgccggcggaggcggtggcgcgcgcg 30409121 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 287 cggcgtgccggcggagacggtggcg 311 ||||||||||||||||| ||||||| Sbjct: 12364577 cggcgtgccggcggagagggtggcg 12364601 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 196 tcgccgccggcgacgaggccg 216 ||||||||||||||||||||| Sbjct: 3487859 tcgccgccggcgacgaggccg 3487839
>dbj|AK073307.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033026A10, full insert sequence Length = 1337 Score = 285 bits (144), Expect = 5e-74 Identities = 246/278 (88%), Gaps = 9/278 (3%) Strand = Plus / Plus Query: 88 ccatgggcggcctctccatgggccaggccttcgtgcaggcccccgagcatcgcaccaagc 147 ||||||||||||||||||||| |||||| |||||||||||||||||||| ||| ||||| Sbjct: 65 ccatgggcggcctctccatggaccaggcgttcgtgcaggcccccgagcaccgccccaagg 124 Query: 148 cgaccctcgccgacgcggacggcatcccggtcatcgacctctcccctctc---gccgccg 204 || || ||||||| || ||||||||||||||||||||||||||||||||| ||||||| Sbjct: 125 cgtccgtcgccgaggccgacggcatcccggtcatcgacctctcccctctcctcgccgccg 184 Query: 205 gcga---cgaggccggcg---tggacgcgctcgcggccgaggtgggcagggcgagccggg 258 |||| ||| |||| || |||||||||||||||| ||||| || ||||||||||||| Sbjct: 185 gcgatggcgacgccgacggggtggacgcgctcgcggcggaggtcgggagggcgagccggg 244 Query: 259 actgggggttcttcgtggtggtgcgccacggcgtgccggcggagacggtggcgcgcgcgc 318 ||||||| ||||||||||||||||||||||| ||||| |||||| |||||||||||||| Sbjct: 245 actggggcttcttcgtggtggtgcgccacggtgtgcccgcggaggcggtggcgcgcgcgg 304 Query: 319 tggaggcgcagagggccttcttcgcgctgccggcggag 356 ||||||||||||| | ||||||||||||||| ||||| Sbjct: 305 cggaggcgcagaggacgttcttcgcgctgccgccggag 342
>dbj|AK063917.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-123-B03, full insert sequence Length = 1449 Score = 178 bits (90), Expect = 8e-42 Identities = 126/138 (91%) Strand = Plus / Plus Query: 219 gtggacgcgctcgcggccgaggtgggcagggcgagccgggactgggggttcttcgtggtg 278 ||||||||||||||||| ||||| || |||||||||||||||||||| |||||||||||| Sbjct: 311 gtggacgcgctcgcggcggaggtcgggagggcgagccgggactggggcttcttcgtggtg 370 Query: 279 gtgcgccacggcgtgccggcggagacggtggcgcgcgcgctggaggcgcagagggccttc 338 ||||||||||| ||||| |||||| |||||||||||||| ||||||||||||| | ||| Sbjct: 371 gtgcgccacggtgtgcccgcggaggcggtggcgcgcgcggcggaggcgcagaggacgttc 430 Query: 339 ttcgcgctgccggcggag 356 |||||||||||| ||||| Sbjct: 431 ttcgcgctgccgccggag 448 Score = 89.7 bits (45), Expect = 6e-15 Identities = 66/73 (90%) Strand = Plus / Plus Query: 88 ccatgggcggcctctccatgggccaggccttcgtgcaggcccccgagcatcgcaccaagc 147 ||||||||||||||||||||| |||||| |||||||||||||||||||| ||| ||||| Sbjct: 62 ccatgggcggcctctccatggaccaggcgttcgtgcaggcccccgagcaccgccccaagg 121 Query: 148 cgaccctcgccga 160 || || ||||||| Sbjct: 122 cgtccgtcgccga 134
>gb|AC097277.6| Oryza sativa chromosome 3 BAC OSJNBa0022C08 genomic sequence, complete sequence Length = 150155 Score = 52.0 bits (26), Expect = 0.001 Identities = 32/34 (94%) Strand = Plus / Plus Query: 155 cgccgacgcggacggcatcccggtcatcgacctc 188 ||||||||| |||| ||||||||||||||||||| Sbjct: 13776 cgccgacgccgacgccatcccggtcatcgacctc 13809
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 52.0 bits (26), Expect = 0.001 Identities = 26/26 (100%) Strand = Plus / Plus Query: 202 ccggcgacgaggccggcgtggacgcg 227 |||||||||||||||||||||||||| Sbjct: 3445132 ccggcgacgaggccggcgtggacgcg 3445157
>emb|BX640443.1| Bordetella bronchiseptica strain RB50, complete genome; segment 7/16 Length = 346274 Score = 48.1 bits (24), Expect = 0.020 Identities = 24/24 (100%) Strand = Plus / Minus Query: 306 gtggcgcgcgcgctggaggcgcag 329 |||||||||||||||||||||||| Sbjct: 165626 gtggcgcgcgcgctggaggcgcag 165603
>emb|BX640428.1| Bordetella parapertussis strain 12822, complete genome; segment 6/14 Length = 348525 Score = 48.1 bits (24), Expect = 0.020 Identities = 24/24 (100%) Strand = Plus / Minus Query: 306 gtggcgcgcgcgctggaggcgcag 329 |||||||||||||||||||||||| Sbjct: 313006 gtggcgcgcgcgctggaggcgcag 312983
>emb|BX640414.1| Bordetella pertussis strain Tohama I, complete genome; segment 4/12 Length = 343243 Score = 48.1 bits (24), Expect = 0.020 Identities = 24/24 (100%) Strand = Plus / Minus Query: 306 gtggcgcgcgcgctggaggcgcag 329 |||||||||||||||||||||||| Sbjct: 97051 gtggcgcgcgcgctggaggcgcag 97028
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 48.1 bits (24), Expect = 0.020 Identities = 27/28 (96%) Strand = Plus / Minus Query: 181 tcgacctctcccctctcgccgccggcga 208 |||||||||||||||||||| ||||||| Sbjct: 7030809 tcgacctctcccctctcgcccccggcga 7030782 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 78 ctcgacatcgccatgggcggc 98 ||||||||||||||||||||| Sbjct: 5747795 ctcgacatcgccatgggcggc 5747815 Score = 42.1 bits (21), Expect = 1.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 296 ggcggagacggtggcgcgcgcgctggagg 324 ||||| |||||||||||| |||||||||| Sbjct: 3246188 ggcggcgacggtggcgcgggcgctggagg 3246160
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 48.1 bits (24), Expect = 0.020 Identities = 24/24 (100%) Strand = Plus / Minus Query: 206 cgacgaggccggcgtggacgcgct 229 |||||||||||||||||||||||| Sbjct: 3287903 cgacgaggccggcgtggacgcgct 3287880 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 200 cgccggcgacgaggccggcg 219 |||||||||||||||||||| Sbjct: 1302753 cgccggcgacgaggccggcg 1302734
>ref|XM_464672.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1856 Score = 46.1 bits (23), Expect = 0.077 Identities = 23/23 (100%) Strand = Plus / Minus Query: 198 gccgccggcgacgaggccggcgt 220 ||||||||||||||||||||||| Sbjct: 615 gccgccggcgacgaggccggcgt 593
>ref|XM_469705.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1467 Score = 46.1 bits (23), Expect = 0.077 Identities = 26/27 (96%) Strand = Plus / Plus Query: 291 gtgccggcggagacggtggcgcgcgcg 317 |||||||||||| |||||||||||||| Sbjct: 1264 gtgccggcggaggcggtggcgcgcgcg 1290
>gb|AY101596.1| Suid herpesvirus 1 UL54 gene, complete cds Length = 1092 Score = 46.1 bits (23), Expect = 0.077 Identities = 23/23 (100%) Strand = Plus / Minus Query: 297 gcggagacggtggcgcgcgcgct 319 ||||||||||||||||||||||| Sbjct: 326 gcggagacggtggcgcgcgcgct 304
>gb|AC123527.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0068G15, complete sequence Length = 146175 Score = 46.1 bits (23), Expect = 0.077 Identities = 35/39 (89%) Strand = Plus / Plus Query: 216 ggcgtggacgcgctcgcggccgaggtgggcagggcgagc 254 |||| ||||| ||| | |||||||||||||||||||||| Sbjct: 41319 ggcggggacgagctggaggccgaggtgggcagggcgagc 41357
>emb|X54638.1|BJGLYA B. japonicum glyA gene for serine hydroxymethyltransferase Length = 2564 Score = 46.1 bits (23), Expect = 0.077 Identities = 23/23 (100%) Strand = Plus / Minus Query: 197 cgccgccggcgacgaggccggcg 219 ||||||||||||||||||||||| Sbjct: 1701 cgccgccggcgacgaggccggcg 1679
>gb|AC092558.4| Oryza sativa chromosome 3 BAC OSJNBb0036F07 genomic sequence, complete sequence Length = 130359 Score = 46.1 bits (23), Expect = 0.077 Identities = 26/27 (96%) Strand = Plus / Minus Query: 291 gtgccggcggagacggtggcgcgcgcg 317 |||||||||||| |||||||||||||| Sbjct: 109405 gtgccggcggaggcggtggcgcgcgcg 109379
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 46.1 bits (23), Expect = 0.077 Identities = 35/39 (89%) Strand = Plus / Plus Query: 216 ggcgtggacgcgctcgcggccgaggtgggcagggcgagc 254 |||| ||||| ||| | |||||||||||||||||||||| Sbjct: 1765399 ggcggggacgagctggaggccgaggtgggcagggcgagc 1765437 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 196 tcgccgccggcgacgaggccggcg 219 ||||||||| |||||||||||||| Sbjct: 19820751 tcgccgccgtcgacgaggccggcg 19820774
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 46.1 bits (23), Expect = 0.077 Identities = 35/39 (89%) Strand = Plus / Plus Query: 216 ggcgtggacgcgctcgcggccgaggtgggcagggcgagc 254 |||| ||||| ||| | |||||||||||||||||||||| Sbjct: 1823489 ggcggggacgagctggaggccgaggtgggcagggcgagc 1823527
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 46.1 bits (23), Expect = 0.077 Identities = 23/23 (100%) Strand = Plus / Minus Query: 198 gccgccggcgacgaggccggcgt 220 ||||||||||||||||||||||| Sbjct: 6637687 gccgccggcgacgaggccggcgt 6637665 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 275 ggtggtgcgccacggcgtgc 294 |||||||||||||||||||| Sbjct: 23488823 ggtggtgcgccacggcgtgc 23488842
>gb|AF310621.1|AF310621 Pseudorabies virus Ea early regulation protein UL54 gene, complete cds Length = 1086 Score = 46.1 bits (23), Expect = 0.077 Identities = 23/23 (100%) Strand = Plus / Minus Query: 297 gcggagacggtggcgcgcgcgct 319 ||||||||||||||||||||||| Sbjct: 320 gcggagacggtggcgcgcgcgct 298
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 46.1 bits (23), Expect = 0.077 Identities = 23/23 (100%) Strand = Plus / Plus Query: 197 cgccgccggcgacgaggccggcg 219 ||||||||||||||||||||||| Sbjct: 5579382 cgccgccggcgacgaggccggcg 5579404 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 79 tcgacatcgccatgggcggcctctc 103 |||||||||||||||||||| |||| Sbjct: 5054032 tcgacatcgccatgggcggcgtctc 5054056
>dbj|AP004996.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0027A02 Length = 140402 Score = 46.1 bits (23), Expect = 0.077 Identities = 23/23 (100%) Strand = Plus / Minus Query: 198 gccgccggcgacgaggccggcgt 220 ||||||||||||||||||||||| Sbjct: 72062 gccgccggcgacgaggccggcgt 72040
>dbj|AK106901.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-118-H08, full insert sequence Length = 2128 Score = 46.1 bits (23), Expect = 0.077 Identities = 35/39 (89%) Strand = Plus / Minus Query: 216 ggcgtggacgcgctcgcggccgaggtgggcagggcgagc 254 |||| ||||| ||| | |||||||||||||||||||||| Sbjct: 1306 ggcggggacgagctggaggccgaggtgggcagggcgagc 1268
>dbj|AK105964.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-205-E05, full insert sequence Length = 1856 Score = 46.1 bits (23), Expect = 0.077 Identities = 23/23 (100%) Strand = Plus / Minus Query: 198 gccgccggcgacgaggccggcgt 220 ||||||||||||||||||||||| Sbjct: 615 gccgccggcgacgaggccggcgt 593
>dbj|AK073051.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033000F22, full insert sequence Length = 2436 Score = 46.1 bits (23), Expect = 0.077 Identities = 35/39 (89%) Strand = Plus / Plus Query: 216 ggcgtggacgcgctcgcggccgaggtgggcagggcgagc 254 |||| ||||| ||| | |||||||||||||||||||||| Sbjct: 754 ggcggggacgagctggaggccgaggtgggcagggcgagc 792
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 46.1 bits (23), Expect = 0.077 Identities = 35/39 (89%) Strand = Plus / Plus Query: 216 ggcgtggacgcgctcgcggccgaggtgggcagggcgagc 254 |||| ||||| ||| | |||||||||||||||||||||| Sbjct: 1821210 ggcggggacgagctggaggccgaggtgggcagggcgagc 1821248
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 46.1 bits (23), Expect = 0.077 Identities = 35/39 (89%) Strand = Plus / Plus Query: 216 ggcgtggacgcgctcgcggccgaggtgggcagggcgagc 254 |||| ||||| ||| | |||||||||||||||||||||| Sbjct: 1765377 ggcggggacgagctggaggccgaggtgggcagggcgagc 1765415 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 196 tcgccgccggcgacgaggccggcg 219 ||||||||| |||||||||||||| Sbjct: 19746965 tcgccgccgtcgacgaggccggcg 19746988
>emb|BX000502.2|CNS08CDS Oryza sativa chromosome 12, . BAC OSJNBb0041E01 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 132026 Score = 46.1 bits (23), Expect = 0.077 Identities = 35/39 (89%) Strand = Plus / Minus Query: 216 ggcgtggacgcgctcgcggccgaggtgggcagggcgagc 254 |||| ||||| ||| | |||||||||||||||||||||| Sbjct: 75083 ggcggggacgagctggaggccgaggtgggcagggcgagc 75045
>emb|BX000504.2|CNS08CDU Oryza sativa chromosome 12, . BAC OJ1239_F07 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 104307 Score = 46.1 bits (23), Expect = 0.077 Identities = 35/39 (89%) Strand = Plus / Minus Query: 216 ggcgtggacgcgctcgcggccgaggtgggcagggcgagc 254 |||| ||||| ||| | |||||||||||||||||||||| Sbjct: 1522 ggcggggacgagctggaggccgaggtgggcagggcgagc 1484
>gb|BT017730.1| Zea mays clone EL01N0448B11.c mRNA sequence Length = 871 Score = 44.1 bits (22), Expect = 0.31 Identities = 22/22 (100%) Strand = Plus / Minus Query: 197 cgccgccggcgacgaggccggc 218 |||||||||||||||||||||| Sbjct: 51 cgccgccggcgacgaggccggc 30
>emb|AL606595.4|OSJN00035 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0044K18, complete sequence Length = 176615 Score = 44.1 bits (22), Expect = 0.31 Identities = 25/26 (96%) Strand = Plus / Plus Query: 191 ccctctcgccgccggcgacgaggccg 216 ||||| |||||||||||||||||||| Sbjct: 57082 ccctcccgccgccggcgacgaggccg 57107
>gb|AE005967.1| Caulobacter crescentus CB15 section 293 of 359 of the complete genome Length = 10677 Score = 44.1 bits (22), Expect = 0.31 Identities = 22/22 (100%) Strand = Plus / Minus Query: 77 tctcgacatcgccatgggcggc 98 |||||||||||||||||||||| Sbjct: 3729 tctcgacatcgccatgggcggc 3708
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 44.1 bits (22), Expect = 0.31 Identities = 25/26 (96%) Strand = Plus / Plus Query: 191 ccctctcgccgccggcgacgaggccg 216 ||||| |||||||||||||||||||| Sbjct: 23892209 ccctcccgccgccggcgacgaggccg 23892234 Score = 40.1 bits (20), Expect = 4.8 Identities = 32/36 (88%) Strand = Plus / Minus Query: 284 ccacggcgtgccggcggagacggtggcgcgcgcgct 319 ||||||||||||||| ||| | ||||||||||||| Sbjct: 32784576 ccacggcgtgccggccgagttgatggcgcgcgcgct 32784541
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 44.1 bits (22), Expect = 0.31 Identities = 25/26 (96%) Strand = Plus / Plus Query: 191 ccctctcgccgccggcgacgaggccg 216 ||||| |||||||||||||||||||| Sbjct: 11305921 ccctcccgccgccggcgacgaggccg 11305946
>dbj|AP002873.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0552C05 Length = 136586 Score = 44.1 bits (22), Expect = 0.31 Identities = 25/26 (96%) Strand = Plus / Plus Query: 191 ccctctcgccgccggcgacgaggccg 216 ||||| |||||||||||||||||||| Sbjct: 19506 ccctcccgccgccggcgacgaggccg 19531
>dbj|AP002871.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0475H04 Length = 143337 Score = 44.1 bits (22), Expect = 0.31 Identities = 25/26 (96%) Strand = Plus / Plus Query: 191 ccctctcgccgccggcgacgaggccg 216 ||||| |||||||||||||||||||| Sbjct: 93326 ccctcccgccgccggcgacgaggccg 93351
>dbj|AK099995.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013132J01, full insert sequence Length = 1262 Score = 44.1 bits (22), Expect = 0.31 Identities = 25/26 (96%) Strand = Plus / Minus Query: 191 ccctctcgccgccggcgacgaggccg 216 ||||| |||||||||||||||||||| Sbjct: 145 ccctcccgccgccggcgacgaggccg 120
>dbj|AK061087.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-206-G06, full insert sequence Length = 1030 Score = 44.1 bits (22), Expect = 0.31 Identities = 25/26 (96%) Strand = Plus / Minus Query: 191 ccctctcgccgccggcgacgaggccg 216 ||||| |||||||||||||||||||| Sbjct: 138 ccctcccgccgccggcgacgaggccg 113
>ref|NM_187741.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 3594 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 196 tcgccgccggcgacgaggccg 216 ||||||||||||||||||||| Sbjct: 506 tcgccgccggcgacgaggccg 486
>gb|AY261359.1| Bovine herpesvirus 5 strain SV507/99, complete genome Length = 138390 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 220 tggacgcgctcgcggccgagg 240 ||||||||||||||||||||| Sbjct: 34204 tggacgcgctcgcggccgagg 34224
>emb|Z78205.1|BHT1UL Bovine herpesvirus type 1 UL22-35 genes Length = 37000 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 220 tggacgcgctcgcggccgagg 240 ||||||||||||||||||||| Sbjct: 2281 tggacgcgctcgcggccgagg 2301
>emb|AJ004801.1|BHV1CGEN Bovine herpesvirus type 1.1 complete genome Length = 135301 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 220 tggacgcgctcgcggccgagg 240 ||||||||||||||||||||| Sbjct: 33081 tggacgcgctcgcggccgagg 33101
>emb|AL591792.1|SME591792 Sinorhizobium meliloti 1021 complete chromosome; segment 11/12 Length = 333800 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 78 ctcgacatcgccatgggcggc 98 ||||||||||||||||||||| Sbjct: 3269 ctcgacatcgccatgggcggc 3289
>gb|AC162467.6| Mus musculus 10 BAC RP24-528H20 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 172752 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 99 ctctccatgggccaggccttc 119 ||||||||||||||||||||| Sbjct: 37530 ctctccatgggccaggccttc 37550
>emb|AJ319659.1|TAE319659 Triticum aestivum mRNA for adenosine diphosphate glucose pyrophosphatase Length = 642 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 78 ctcgacatcgccatgggcggc 98 ||||||||||||||||||||| Sbjct: 277 ctcgacatcgccatgggcggc 297
>gb|AC125496.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0098H14, complete sequence Length = 132560 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 287 cggcgtgccggcggagacggtggcg 311 ||||||||||||||||| ||||||| Sbjct: 26832 cggcgtgccggcggagagggtggcg 26856
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 308 ggcgcgcgcgctggaggcgca 328 ||||||||||||||||||||| Sbjct: 4191551 ggcgcgcgcgctggaggcgca 4191531 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 196 tcgccgccggcgacgaggccggcg 219 ||||||||||||||| |||||||| Sbjct: 2995876 tcgccgccggcgacgtggccggcg 2995853
>emb|BX470161.8| Zebrafish DNA sequence from clone RP71-84I2, complete sequence Length = 197615 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 78 ctcgacatcgccatgggcggc 98 ||||||||||||||||||||| Sbjct: 17396 ctcgacatcgccatgggcggc 17416
>gb|AE005862.1| Caulobacter crescentus CB15 section 188 of 359 of the complete genome Length = 10016 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 196 tcgccgccggcgacgaggccg 216 ||||||||||||||||||||| Sbjct: 6359 tcgccgccggcgacgaggccg 6379
>gb|AC104428.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1123F12, complete sequence Length = 103330 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 196 tcgccgccggcgacgaggccg 216 ||||||||||||||||||||| Sbjct: 22627 tcgccgccggcgacgaggccg 22647
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 42.1 bits (21), Expect = 1.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 215 cggcgtggacgcgctcgcggccgaggtgg 243 ||||||||||||| |||||| |||||||| Sbjct: 1371229 cggcgtggacgcggtcgcggtcgaggtgg 1371201 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 200 cgccggcgacgaggccggcg 219 |||||||||||||||||||| Sbjct: 4991718 cgccggcgacgaggccggcg 4991737 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 209 cgaggccggcgtggacgcgc 228 |||||||||||||||||||| Sbjct: 4338546 cgaggccggcgtggacgcgc 4338565 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 300 gagacggtggcgcgcgcgct 319 |||||||||||||||||||| Sbjct: 3828032 gagacggtggcgcgcgcgct 3828051 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 218 cgtggacgcgctcgcggccg 237 |||||||||||||||||||| Sbjct: 1784773 cgtggacgcgctcgcggccg 1784754 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 307 tggcgcgcgcgctggaggcg 326 |||||||||||||||||||| Sbjct: 1491987 tggcgcgcgcgctggaggcg 1492006 Score = 40.1 bits (20), Expect = 4.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 198 gccgccggcgacgaggccggcgtggacg 225 |||| |||||||||||||||||| |||| Sbjct: 394795 gccgtcggcgacgaggccggcgtcgacg 394768
>gb|AC107225.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0026H19, complete sequence Length = 150620 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 196 tcgccgccggcgacgaggccg 216 ||||||||||||||||||||| Sbjct: 5401 tcgccgccggcgacgaggccg 5381
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 78 ctcgacatcgccatgggcggc 98 ||||||||||||||||||||| Sbjct: 4279737 ctcgacatcgccatgggcggc 4279757
>gb|AF153086.1|AF153086 Burkholderia sp. DSMZ 9242 polyhydroxyalkanoate biosynthesis gene cluster and unknown gene, complete cds Length = 5500 Score = 42.1 bits (21), Expect = 1.2 Identities = 30/33 (90%) Strand = Plus / Plus Query: 279 gtgcgccacggcgtgccggcggagacggtggcg 311 ||||||||||||||| |||||||| || ||||| Sbjct: 3101 gtgcgccacggcgtgacggcggagtcgctggcg 3133
>dbj|AK105244.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-113-F08, full insert sequence Length = 1483 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 287 cggcgtgccggcggagacggtggcg 311 ||||||||||||||||| ||||||| Sbjct: 117 cggcgtgccggcggagagggtggcg 141
>gb|AY108935.1| Zea mays PCO091688 mRNA sequence Length = 1084 Score = 42.1 bits (21), Expect = 1.2 Identities = 30/33 (90%) Strand = Plus / Plus Query: 320 ggaggcgcagagggccttcttcgcgctgccggc 352 |||||||||| | || ||||||||||||||||| Sbjct: 29 ggaggcgcagcgcgcgttcttcgcgctgccggc 61
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 153 ctcgccgacgcggacggcatc 173 ||||||||||||||||||||| Sbjct: 2077984 ctcgccgacgcggacggcatc 2078004
>ref|XM_480142.1| Oryza sativa (japonica cultivar-group), mRNA Length = 750 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 200 cgccggcgacgaggccggcg 219 |||||||||||||||||||| Sbjct: 340 cgccggcgacgaggccggcg 321
>ref|XM_474083.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 981 Score = 40.1 bits (20), Expect = 4.8 Identities = 32/36 (88%) Strand = Plus / Plus Query: 284 ccacggcgtgccggcggagacggtggcgcgcgcgct 319 ||||||||||||||| ||| | ||||||||||||| Sbjct: 165 ccacggcgtgccggccgagttgatggcgcgcgcgct 200
>ref|XM_507398.1| PREDICTED Oryza sativa (japonica cultivar-group), P0011H09.138 mRNA Length = 1480 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 308 ggcgcgcgcgctggaggcgc 327 |||||||||||||||||||| Sbjct: 1317 ggcgcgcgcgctggaggcgc 1336
>ref|XM_507397.1| PREDICTED Oryza sativa (japonica cultivar-group), P0011H09.138 mRNA Length = 1834 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 308 ggcgcgcgcgctggaggcgc 327 |||||||||||||||||||| Sbjct: 1671 ggcgcgcgcgctggaggcgc 1690
>ref|NM_193082.2| Oryza sativa (japonica cultivar-group), mRNA Length = 1331 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 308 ggcgcgcgcgctggaggcgc 327 |||||||||||||||||||| Sbjct: 1168 ggcgcgcgcgctggaggcgc 1187
>ref|XM_506491.2| PREDICTED Oryza sativa (japonica cultivar-group), P0011H09.138 mRNA Length = 1611 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 308 ggcgcgcgcgctggaggcgc 327 |||||||||||||||||||| Sbjct: 1204 ggcgcgcgcgctggaggcgc 1223
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 154 tcgccgacgcggacggcatcccgg 177 |||||| ||||||||||||||||| Sbjct: 532973 tcgccggcgcggacggcatcccgg 532950
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome Length = 6438405 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 78 ctcgacatcgccatgggcgg 97 |||||||||||||||||||| Sbjct: 6018387 ctcgacatcgccatgggcgg 6018406
>gb|AC120986.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1781_H11, complete sequence Length = 204649 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 286 acggcgtgccggcggagacg 305 |||||||||||||||||||| Sbjct: 167285 acggcgtgccggcggagacg 167304
>gb|AC120990.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0040E06, complete sequence Length = 160907 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 286 acggcgtgccggcggagacg 305 |||||||||||||||||||| Sbjct: 19795 acggcgtgccggcggagacg 19814
>gb|AC097111.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1014_C08, complete sequence Length = 95638 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 190 cccctctcgccgccggcgac 209 |||||||||||||||||||| Sbjct: 51569 cccctctcgccgccggcgac 51588
>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome Length = 3402093 Score = 40.1 bits (20), Expect = 4.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 287 cggcgtgccggcggagacggtggcgcgc 314 |||||||||||||| ||||| ||||||| Sbjct: 1511586 cggcgtgccggcggcgacggcggcgcgc 1511559
>gb|AC146118.3| Pan troglodytes BAC clone RP43-23A6 from 7, complete sequence Length = 166241 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 315 gcgctggaggcgcagagggc 334 |||||||||||||||||||| Sbjct: 14571 gcgctggaggcgcagagggc 14552
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome Length = 5178466 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 266 gttcttcgtggtggtgcgcc 285 |||||||||||||||||||| Sbjct: 3029484 gttcttcgtggtggtgcgcc 3029503
>gb|AC004987.2| Homo sapiens PAC clone RP5-1173I20 from 7, complete sequence Length = 111158 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 315 gcgctggaggcgcagagggc 334 |||||||||||||||||||| Sbjct: 21101 gcgctggaggcgcagagggc 21082
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 64 tgctgatcggcgatctcgac 83 |||||||||||||||||||| Sbjct: 3252743 tgctgatcggcgatctcgac 3252762
>gb|AC161231.7| Mus musculus chromosome 5, clone RP24-241P24, complete sequence Length = 193682 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 98 cctctccatgggccaggcct 117 |||||||||||||||||||| Sbjct: 12565 cctctccatgggccaggcct 12584
>emb|AL731607.3|OSJN00250 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0063C18, complete sequence Length = 150416 Score = 40.1 bits (20), Expect = 4.8 Identities = 32/36 (88%) Strand = Plus / Minus Query: 284 ccacggcgtgccggcggagacggtggcgcgcgcgct 319 ||||||||||||||| ||| | ||||||||||||| Sbjct: 144005 ccacggcgtgccggccgagttgatggcgcgcgcgct 143970
>gb|AY131229.2| Streptomyces sp. 139 exopolysaccharide gene cluster, complete sequence Length = 31310 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 293 gccggcggagacggtggcgcgcgc 316 |||||||||| ||||||||||||| Sbjct: 11675 gccggcggagccggtggcgcgcgc 11652
>gb|AC161348.2| Mus musculus chromosome 5, clone RP23-393E10, complete sequence Length = 221768 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 98 cctctccatgggccaggcct 117 |||||||||||||||||||| Sbjct: 30846 cctctccatgggccaggcct 30827
>gb|AC068950.11| Oryza sativa chromosome 10 BAC OSJNBa0041P03 genomic sequence, complete sequence Length = 139614 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 185 cctctcccctctcgccgccg 204 |||||||||||||||||||| Sbjct: 115678 cctctcccctctcgccgccg 115659
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome Length = 4940217 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 266 gttcttcgtggtggtgcgcc 285 |||||||||||||||||||| Sbjct: 2964989 gttcttcgtggtggtgcgcc 2965008
>emb|CR614530.1| full-length cDNA clone CS0DL003YE05 of B cells (Ramos cell line) Cot 25-normalized of Homo sapiens (human) Length = 1244 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 315 gcgctggaggcgcagagggc 334 |||||||||||||||||||| Sbjct: 18 gcgctggaggcgcagagggc 37
>emb|CR611778.1| full-length cDNA clone CS0DA012YM20 of Neuroblastoma of Homo sapiens (human) Length = 1737 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 315 gcgctggaggcgcagagggc 334 |||||||||||||||||||| Sbjct: 20 gcgctggaggcgcagagggc 39
>emb|CR597893.1| full-length cDNA clone CS0DI054YH10 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1657 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 315 gcgctggaggcgcagagggc 334 |||||||||||||||||||| Sbjct: 20 gcgctggaggcgcagagggc 39
>gb|AE011888.1| Xanthomonas axonopodis pv. citri str. 306, section 266 of 469 of the complete genome Length = 10774 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 266 gttcttcgtggtggtgcgcc 285 |||||||||||||||||||| Sbjct: 5229 gttcttcgtggtggtgcgcc 5248
>gb|CP000133.1| Rhizobium etli CFN 42, complete genome Length = 4381608 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 60 gatctgctgatcggcgatctcgac 83 ||||||||||||| |||||||||| Sbjct: 3663580 gatctgctgatcgccgatctcgac 3663557
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 118 tcgtgcaggcccccgagcat 137 |||||||||||||||||||| Sbjct: 2640012 tcgtgcaggcccccgagcat 2639993
>gb|AC148823.4| Pan troglodytes BAC clone CH251-558F7 from chromosome 7, complete sequence Length = 130069 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 315 gcgctggaggcgcagagggc 334 |||||||||||||||||||| Sbjct: 36510 gcgctggaggcgcagagggc 36529
>gb|AE016817.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome IV, complete sequence Length = 1466886 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 308 ggcgcgcgcgctggaggcgc 327 |||||||||||||||||||| Sbjct: 17075 ggcgcgcgcgctggaggcgc 17094
>gb|AE016818.1| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome V, complete sequence Length = 1519138 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 308 ggcgcgcgcgctggaggcgc 327 |||||||||||||||||||| Sbjct: 1513514 ggcgcgcgcgctggaggcgc 1513495
>gb|AE016819.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome VI, complete sequence Length = 1813164 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 308 ggcgcgcgcgctggaggcgc 327 |||||||||||||||||||| Sbjct: 1607367 ggcgcgcgcgctggaggcgc 1607386
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 289 gcgtgccggcggagacggtg 308 |||||||||||||||||||| Sbjct: 655430 gcgtgccggcggagacggtg 655411
>tpg|BK001744.1| TPA: TPA_exp: Suid herpesvirus 1, complete genome Length = 143461 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 208 acgaggccggcgtggacgcg 227 |||||||||||||||||||| Sbjct: 26234 acgaggccggcgtggacgcg 26253
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 185 cctctcccctctcgccgccg 204 |||||||||||||||||||| Sbjct: 18235492 cctctcccctctcgccgccg 18235511
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 196 tcgccgccggcgacgaggcc 215 |||||||||||||||||||| Sbjct: 27567232 tcgccgccggcgacgaggcc 27567213 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 308 ggcgcgcgcgctggaggcgc 327 |||||||||||||||||||| Sbjct: 26100652 ggcgcgcgcgctggaggcgc 26100633
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 286 acggcgtgccggcggagacg 305 |||||||||||||||||||| Sbjct: 28087120 acggcgtgccggcggagacg 28087139 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 190 cccctctcgccgccggcgac 209 |||||||||||||||||||| Sbjct: 26354216 cccctctcgccgccggcgac 26354235
>gb|AC134985.11| Mus musculus chromosome 5, clone RP24-432L3, complete sequence Length = 199782 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 98 cctctccatgggccaggcct 117 |||||||||||||||||||| Sbjct: 73144 cctctccatgggccaggcct 73163
>dbj|AP005184.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0047B07 Length = 157797 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 196 tcgccgccggcgacgaggcc 215 |||||||||||||||||||| Sbjct: 24225 tcgccgccggcgacgaggcc 24206
>dbj|AP005182.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0018C07 Length = 141707 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 196 tcgccgccggcgacgaggcc 215 |||||||||||||||||||| Sbjct: 131203 tcgccgccggcgacgaggcc 131184
>dbj|AP004260.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0011H09 Length = 147992 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 308 ggcgcgcgcgctggaggcgc 327 |||||||||||||||||||| Sbjct: 134214 ggcgcgcgcgctggaggcgc 134195
>dbj|AP005385.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1791_B03 Length = 166214 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 275 ggtggtgcgccacggcgtgc 294 |||||||||||||||||||| Sbjct: 54506 ggtggtgcgccacggcgtgc 54525
>dbj|AP005293.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1653_F07, complete sequence Length = 110109 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 275 ggtggtgcgccacggcgtgc 294 |||||||||||||||||||| Sbjct: 107498 ggtggtgcgccacggcgtgc 107517
>dbj|AP005467.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1349_D05 Length = 174478 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 200 cgccggcgacgaggccggcg 219 |||||||||||||||||||| Sbjct: 114573 cgccggcgacgaggccggcg 114592
>dbj|AP003940.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1066_B03 Length = 115339 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 200 cgccggcgacgaggccggcg 219 |||||||||||||||||||| Sbjct: 23334 cgccggcgacgaggccggcg 23353
>dbj|AK106083.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-207-A10, full insert sequence Length = 1331 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 308 ggcgcgcgcgctggaggcgc 327 |||||||||||||||||||| Sbjct: 1168 ggcgcgcgcgctggaggcgc 1187
>ref|NM_212324.1| Eremothecium gossypii AFR641Wp (AFR641W), mRNA Length = 606 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 308 ggcgcgcgcgctggaggcgc 327 |||||||||||||||||||| Sbjct: 27 ggcgcgcgcgctggaggcgc 46
>ref|NM_209053.1| Eremothecium gossypii ADL396Wp (ADL396W), mRNA Length = 585 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 308 ggcgcgcgcgctggaggcgc 327 |||||||||||||||||||| Sbjct: 6 ggcgcgcgcgctggaggcgc 25
>dbj|AK071297.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023084J02, full insert sequence Length = 1611 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 308 ggcgcgcgcgctggaggcgc 327 |||||||||||||||||||| Sbjct: 1203 ggcgcgcgcgctggaggcgc 1222
>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence Length = 3131724 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 196 tcgccgccggcgacgaggccggcg 219 |||||| ||||||||||||||||| Sbjct: 102925 tcgccgtcggcgacgaggccggcg 102948
>dbj|AK068064.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013130E16, full insert sequence Length = 1834 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 308 ggcgcgcgcgctggaggcgc 327 |||||||||||||||||||| Sbjct: 1671 ggcgcgcgcgctggaggcgc 1690
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 310 cgcgcgcgctggaggcgcag 329 |||||||||||||||||||| Sbjct: 1933850 cgcgcgcgctggaggcgcag 1933869 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 266 gttcttcgtggtggtgcgcc 285 |||||||||||||||||||| Sbjct: 8536 gttcttcgtggtggtgcgcc 8517
>dbj|AK063781.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-121-D07, full insert sequence Length = 947 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 286 acggcgtgccggcggagacg 305 |||||||||||||||||||| Sbjct: 355 acggcgtgccggcggagacg 374
>dbj|AK059570.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-030-A01, full insert sequence Length = 1480 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 308 ggcgcgcgcgctggaggcgc 327 |||||||||||||||||||| Sbjct: 1317 ggcgcgcgcgctggaggcgc 1336
>emb|AL732332.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0306F03, complete sequence Length = 91539 Score = 40.1 bits (20), Expect = 4.8 Identities = 32/36 (88%) Strand = Plus / Minus Query: 284 ccacggcgtgccggcggagacggtggcgcgcgcgct 319 ||||||||||||||| ||| | ||||||||||||| Sbjct: 55922 ccacggcgtgccggccgagttgatggcgcgcgcgct 55887
>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome Length = 4941439 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 266 gttcttcgtggtggtgcgcc 285 |||||||||||||||||||| Sbjct: 2990891 gttcttcgtggtggtgcgcc 2990910
>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome Length = 2595221 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 201 gccggcgacgaggccggcgt 220 |||||||||||||||||||| Sbjct: 2591506 gccggcgacgaggccggcgt 2591487
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 185 cctctcccctctcgccgccg 204 |||||||||||||||||||| Sbjct: 18244745 cctctcccctctcgccgccg 18244764
>emb|AL713931.5|CNS07YP8 Oryza sativa chromosome 12, . BAC OSJNBa0035B12 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 161160 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 196 tcgccgccggcgacgaggccggcg 219 ||||||||| |||||||||||||| Sbjct: 97637 tcgccgccgtcgacgaggccggcg 97660
>emb|AL606454.3|OSJN00009 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0033G05, complete sequence Length = 142556 Score = 40.1 bits (20), Expect = 4.8 Identities = 32/36 (88%) Strand = Plus / Minus Query: 284 ccacggcgtgccggcggagacggtggcgcgcgcgct 319 ||||||||||||||| ||| | ||||||||||||| Sbjct: 46862 ccacggcgtgccggccgagttgatggcgcgcgcgct 46827
>gb|L24487.1|SH1DNAPOLA Pseudorabies virus DNA polymerase gene, partial cds Length = 3144 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 208 acgaggccggcgtggacgcg 227 |||||||||||||||||||| Sbjct: 629 acgaggccggcgtggacgcg 648
>gb|M21694.1|APHOVP1I2 Foot and mouth disease virus (serotype O) variant VP1 capsid protein gene, partial cds Length = 204 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 239 ggtgggcagggcgagccggg 258 |||||||||||||||||||| Sbjct: 36 ggtgggcagggcgagccggg 17 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,343,430 Number of Sequences: 3902068 Number of extensions: 2343430 Number of successful extensions: 88561 Number of sequences better than 10.0: 124 Number of HSP's better than 10.0 without gapping: 138 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 81563 Number of HSP's gapped (non-prelim): 6995 length of query: 359 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 337 effective length of database: 17,147,199,772 effective search space: 5778606323164 effective search space used: 5778606323164 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
