Clone Name | bart51d10 |
---|---|
Clone Library Name | barley_pub |
>gb|AC107734.13| Mus musculus chromosome 7, clone RP23-399E4, complete sequence Length = 198485 Score = 44.1 bits (22), Expect = 0.40 Identities = 25/26 (96%) Strand = Plus / Plus Query: 319 ctattcacttctgcacccatagcaca 344 ||||| |||||||||||||||||||| Sbjct: 78792 ctatttacttctgcacccatagcaca 78817
>ref|XM_523173.1| PREDICTED: Pan troglodytes LOC467778 (LOC467778), mRNA Length = 9588 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 144 gctgagccctcccttctcccc 164 ||||||||||||||||||||| Sbjct: 6357 gctgagccctcccttctcccc 6377
>ref|XM_615429.2| PREDICTED: Bos taurus similar to Metabotropic glutamate receptor 7 precursor (mGluR7) (LOC535362), mRNA Length = 3431 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 21 tcccaacatggcaagaaagac 41 ||||||||||||||||||||| Sbjct: 1308 tcccaacatggcaagaaagac 1288
>gb|AC023024.6| Homo sapiens, clone RP11-299G20, complete sequence Length = 183671 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 144 gctgagccctcccttctcccc 164 ||||||||||||||||||||| Sbjct: 177937 gctgagccctcccttctcccc 177917
>gb|AC161867.6| Mus musculus chromosome 8, clone RP24-281E22, complete sequence Length = 180410 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 23 ccaacatggcaagaaagaccc 43 ||||||||||||||||||||| Sbjct: 15423 ccaacatggcaagaaagaccc 15443
>gb|AC087528.15| Homo sapiens chromosome 15, clone RP11-497M17, complete sequence Length = 142965 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 144 gctgagccctcccttctcccc 164 ||||||||||||||||||||| Sbjct: 122793 gctgagccctcccttctcccc 122813
>dbj|AB001914.2| Homo sapiens genes for PACE4A-I, PACE4A-II, PACE4E-II, PACE4E-I, PACE4C, PACE4CS, PACE4B, PACE4D, complete cds Length = 55640 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 144 gctgagccctcccttctcccc 164 ||||||||||||||||||||| Sbjct: 28277 gctgagccctcccttctcccc 28297
>gb|AC108915.12| Mus musculus chromosome 8, clone RP23-444O13, complete sequence Length = 178228 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 23 ccaacatggcaagaaagaccc 43 ||||||||||||||||||||| Sbjct: 143558 ccaacatggcaagaaagaccc 143578
>ref|XM_550342.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1834 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 174 ttgcggccgccttggcgctg 193 |||||||||||||||||||| Sbjct: 509 ttgcggccgccttggcgctg 528
>ref|XM_472010.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1902 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 319 ctattcacttctgcacccat 338 |||||||||||||||||||| Sbjct: 298 ctattcacttctgcacccat 317
>gb|AC163225.4| Mus musculus chromosome 8, clone RP23-319L22, complete sequence Length = 192661 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 435 gttttctatgcagatatgtgaaacattt 462 |||||||||||||||||| |||||||| Sbjct: 59380 gttttctatgcagatatggaaaacattt 59353
>emb|CR855267.20| Zebrafish DNA sequence from clone DKEY-220L13, complete sequence Length = 142801 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 151 cctcccttctcccctgtccg 170 |||||||||||||||||||| Sbjct: 35549 cctcccttctcccctgtccg 35568
>emb|AL662963.3|OSJN00163 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0020I02, complete sequence Length = 172435 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 319 ctattcacttctgcacccat 338 |||||||||||||||||||| Sbjct: 97152 ctattcacttctgcacccat 97171
>dbj|AP008232.1| Sodalis glossinidius str. 'morsitans' DNA, complete genome Length = 4171146 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 400 ggttcatttagcttattgcgaatg 423 |||||||||||| ||||||||||| Sbjct: 2340427 ggttcatttagcatattgcgaatg 2340404
>gb|AC095353.9| Homo sapiens Xp BAC RP11-615L18 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 142000 Score = 40.1 bits (20), Expect = 6.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 322 ttcacttctgcacccatagcacag 345 ||||||||||| |||||||||||| Sbjct: 100081 ttcacttctgctcccatagcacag 100058
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 319 ctattcacttctgcacccat 338 |||||||||||||||||||| Sbjct: 16567919 ctattcacttctgcacccat 16567938
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 149 gccctcccttctcccctgtc 168 |||||||||||||||||||| Sbjct: 7767679 gccctcccttctcccctgtc 7767698 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 174 ttgcggccgccttggcgctg 193 |||||||||||||||||||| Sbjct: 3134580 ttgcggccgccttggcgctg 3134599 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 174 ttgcggccgccttggcgctg 193 |||||||||||||||||||| Sbjct: 3130721 ttgcggccgccttggcgctg 3130740
>dbj|AB026295.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, clone:P0681F10 Length = 170371 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 174 ttgcggccgccttggcgctg 193 |||||||||||||||||||| Sbjct: 88765 ttgcggccgccttggcgctg 88784 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 174 ttgcggccgccttggcgctg 193 |||||||||||||||||||| Sbjct: 84906 ttgcggccgccttggcgctg 84925
>dbj|AP004651.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0091G06 Length = 161851 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 149 gccctcccttctcccctgtc 168 |||||||||||||||||||| Sbjct: 80177 gccctcccttctcccctgtc 80196
>dbj|AK058023.1| Homo sapiens cDNA FLJ25294 fis, clone STM07436 Length = 2796 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 261 gaggctgaaaggggaagagc 280 |||||||||||||||||||| Sbjct: 85 gaggctgaaaggggaagagc 104
>dbj|AK106234.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-100-B09, full insert sequence Length = 1834 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 174 ttgcggccgccttggcgctg 193 |||||||||||||||||||| Sbjct: 509 ttgcggccgccttggcgctg 528
>dbj|AK102622.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033099H13, full insert sequence Length = 2291 Score = 40.1 bits (20), Expect = 6.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 319 ctattcacttctgcacccat 338 |||||||||||||||||||| Sbjct: 299 ctattcacttctgcacccat 318
>gb|U80806.1|HPU80806 Hydrogenophaga pseudoflava carbon monoxide dehydrogenase middle subunit CutM, small subunit CutS and large subunit CutL genes, complete cds Length = 4394 Score = 40.1 bits (20), Expect = 6.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 366 cccagatgaagatggggttgtggtgctc 393 ||||| |||||||| ||||||||||||| Sbjct: 2466 cccaggtgaagatgtggttgtggtgctc 2439 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,844,407 Number of Sequences: 3902068 Number of extensions: 2844407 Number of successful extensions: 54962 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 24 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 54854 Number of HSP's gapped (non-prelim): 108 length of query: 464 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 442 effective length of database: 17,147,199,772 effective search space: 7579062299224 effective search space used: 7579062299224 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)