ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart51d10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC107734.13| Mus musculus chromosome 7, clone RP23-399E4, com... 44 0.40
2ref|XM_523173.1| PREDICTED: Pan troglodytes LOC467778 (LOC467778... 42 1.6
3ref|XM_615429.2| PREDICTED: Bos taurus similar to Metabotropic g... 42 1.6
4gb|AC023024.6| Homo sapiens, clone RP11-299G20, complete sequence 42 1.6
5gb|AC161867.6| Mus musculus chromosome 8, clone RP24-281E22, com... 42 1.6
6gb|AC087528.15| Homo sapiens chromosome 15, clone RP11-497M17, c... 42 1.6
7dbj|AB001914.2| Homo sapiens genes for PACE4A-I, PACE4A-II, PACE... 42 1.6
8gb|AC108915.12| Mus musculus chromosome 8, clone RP23-444O13, co... 42 1.6
9ref|XM_550342.1| Oryza sativa (japonica cultivar-group), mRNA 40 6.3
10ref|XM_472010.1| Oryza sativa (japonica cultivar-group), predic... 40 6.3
11gb|AC163225.4| Mus musculus chromosome 8, clone RP23-319L22, com... 40 6.3
12emb|CR855267.20| Zebrafish DNA sequence from clone DKEY-220L13, ... 40 6.3
13emb|AL662963.3|OSJN00163 Oryza sativa genomic DNA, chromosome 4,... 40 6.3
14dbj|AP008232.1| Sodalis glossinidius str. 'morsitans' DNA, compl... 40 6.3
15gb|AC095353.9| Homo sapiens Xp BAC RP11-615L18 (Roswell Park Can... 40 6.3
16dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
17dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
18dbj|AB026295.2| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
19dbj|AP004651.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
20dbj|AK058023.1| Homo sapiens cDNA FLJ25294 fis, clone STM07436 40 6.3
21dbj|AK106234.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.3
22dbj|AK102622.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.3
23gb|U80806.1|HPU80806 Hydrogenophaga pseudoflava carbon monoxide ... 40 6.3

>gb|AC107734.13| Mus musculus chromosome 7, clone RP23-399E4, complete sequence
          Length = 198485

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 319   ctattcacttctgcacccatagcaca 344
             ||||| ||||||||||||||||||||
Sbjct: 78792 ctatttacttctgcacccatagcaca 78817



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>ref|XM_523173.1| PREDICTED: Pan troglodytes LOC467778 (LOC467778), mRNA
          Length = 9588

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 144  gctgagccctcccttctcccc 164
            |||||||||||||||||||||
Sbjct: 6357 gctgagccctcccttctcccc 6377



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>ref|XM_615429.2| PREDICTED: Bos taurus similar to Metabotropic glutamate receptor 7
            precursor (mGluR7) (LOC535362), mRNA
          Length = 3431

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 21   tcccaacatggcaagaaagac 41
            |||||||||||||||||||||
Sbjct: 1308 tcccaacatggcaagaaagac 1288



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>gb|AC023024.6| Homo sapiens, clone RP11-299G20, complete sequence
          Length = 183671

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 144    gctgagccctcccttctcccc 164
              |||||||||||||||||||||
Sbjct: 177937 gctgagccctcccttctcccc 177917



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>gb|AC161867.6| Mus musculus chromosome 8, clone RP24-281E22, complete sequence
          Length = 180410

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 23    ccaacatggcaagaaagaccc 43
             |||||||||||||||||||||
Sbjct: 15423 ccaacatggcaagaaagaccc 15443



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>gb|AC087528.15| Homo sapiens chromosome 15, clone RP11-497M17, complete sequence
          Length = 142965

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 144    gctgagccctcccttctcccc 164
              |||||||||||||||||||||
Sbjct: 122793 gctgagccctcccttctcccc 122813



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>dbj|AB001914.2| Homo sapiens genes for PACE4A-I, PACE4A-II, PACE4E-II, PACE4E-I,
             PACE4C, PACE4CS, PACE4B, PACE4D, complete cds
          Length = 55640

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 144   gctgagccctcccttctcccc 164
             |||||||||||||||||||||
Sbjct: 28277 gctgagccctcccttctcccc 28297



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>gb|AC108915.12| Mus musculus chromosome 8, clone RP23-444O13, complete sequence
          Length = 178228

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 23     ccaacatggcaagaaagaccc 43
              |||||||||||||||||||||
Sbjct: 143558 ccaacatggcaagaaagaccc 143578



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>ref|XM_550342.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1834

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 174 ttgcggccgccttggcgctg 193
           ||||||||||||||||||||
Sbjct: 509 ttgcggccgccttggcgctg 528



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>ref|XM_472010.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1902

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 319 ctattcacttctgcacccat 338
           ||||||||||||||||||||
Sbjct: 298 ctattcacttctgcacccat 317



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>gb|AC163225.4| Mus musculus chromosome 8, clone RP23-319L22, complete sequence
          Length = 192661

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 435   gttttctatgcagatatgtgaaacattt 462
             ||||||||||||||||||  ||||||||
Sbjct: 59380 gttttctatgcagatatggaaaacattt 59353



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>emb|CR855267.20| Zebrafish DNA sequence from clone DKEY-220L13, complete sequence
          Length = 142801

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 151   cctcccttctcccctgtccg 170
             ||||||||||||||||||||
Sbjct: 35549 cctcccttctcccctgtccg 35568



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>emb|AL662963.3|OSJN00163 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0020I02,
             complete sequence
          Length = 172435

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 319   ctattcacttctgcacccat 338
             ||||||||||||||||||||
Sbjct: 97152 ctattcacttctgcacccat 97171



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>dbj|AP008232.1| Sodalis glossinidius str. 'morsitans' DNA, complete genome
          Length = 4171146

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 400     ggttcatttagcttattgcgaatg 423
               |||||||||||| |||||||||||
Sbjct: 2340427 ggttcatttagcatattgcgaatg 2340404



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>gb|AC095353.9| Homo sapiens Xp BAC RP11-615L18 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 142000

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 322    ttcacttctgcacccatagcacag 345
              ||||||||||| ||||||||||||
Sbjct: 100081 ttcacttctgctcccatagcacag 100058



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 319      ctattcacttctgcacccat 338
                ||||||||||||||||||||
Sbjct: 16567919 ctattcacttctgcacccat 16567938



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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 149     gccctcccttctcccctgtc 168
               ||||||||||||||||||||
Sbjct: 7767679 gccctcccttctcccctgtc 7767698



 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 174     ttgcggccgccttggcgctg 193
               ||||||||||||||||||||
Sbjct: 3134580 ttgcggccgccttggcgctg 3134599



 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 174     ttgcggccgccttggcgctg 193
               ||||||||||||||||||||
Sbjct: 3130721 ttgcggccgccttggcgctg 3130740



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>dbj|AB026295.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6,
             clone:P0681F10
          Length = 170371

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 174   ttgcggccgccttggcgctg 193
             ||||||||||||||||||||
Sbjct: 88765 ttgcggccgccttggcgctg 88784



 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 174   ttgcggccgccttggcgctg 193
             ||||||||||||||||||||
Sbjct: 84906 ttgcggccgccttggcgctg 84925



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>dbj|AP004651.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0091G06
          Length = 161851

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 149   gccctcccttctcccctgtc 168
             ||||||||||||||||||||
Sbjct: 80177 gccctcccttctcccctgtc 80196



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>dbj|AK058023.1| Homo sapiens cDNA FLJ25294 fis, clone STM07436
          Length = 2796

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 261 gaggctgaaaggggaagagc 280
           ||||||||||||||||||||
Sbjct: 85  gaggctgaaaggggaagagc 104



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>dbj|AK106234.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-100-B09, full
           insert sequence
          Length = 1834

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 174 ttgcggccgccttggcgctg 193
           ||||||||||||||||||||
Sbjct: 509 ttgcggccgccttggcgctg 528



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>dbj|AK102622.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033099H13, full
           insert sequence
          Length = 2291

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 319 ctattcacttctgcacccat 338
           ||||||||||||||||||||
Sbjct: 299 ctattcacttctgcacccat 318



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>gb|U80806.1|HPU80806 Hydrogenophaga pseudoflava carbon monoxide dehydrogenase middle
            subunit CutM, small subunit CutS and large subunit CutL
            genes, complete cds
          Length = 4394

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 366  cccagatgaagatggggttgtggtgctc 393
            ||||| |||||||| |||||||||||||
Sbjct: 2466 cccaggtgaagatgtggttgtggtgctc 2439


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,844,407
Number of Sequences: 3902068
Number of extensions: 2844407
Number of successful extensions: 54962
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 54854
Number of HSP's gapped (non-prelim): 108
length of query: 464
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 442
effective length of database: 17,147,199,772
effective search space: 7579062299224
effective search space used: 7579062299224
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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