ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart51d07 |
|---|---|
| Clone Library Name | barley_pub |
>TPM4_DROME (P49455) Tropomyosin 1, isoforms 33/34 (Tropomyosin II)| Length = 518 Score = 33.5 bits (75), Expect = 0.12 Identities = 23/72 (31%), Positives = 27/72 (37%), Gaps = 2/72 (2%) Frame = +1 Query: 142 DPARSGYHHHPPLAMGAADEHHEEASPL--LAPPADEKLPPAQDPAKGCADGVPVVMGEP 315 +P + P A GAA A P PPAD PPA+ A P G Sbjct: 403 EPVPAAEGEAAPAAEGAAPPAEGAAPPAEGAVPPADGAAPPAEGAAPAAEGAAPPADGAA 462 Query: 316 VAAPAGDAPRDS 351 A A AP D+ Sbjct: 463 PPAEAAAAPADA 474 Score = 32.3 bits (72), Expect = 0.28 Identities = 22/57 (38%), Positives = 25/57 (43%), Gaps = 2/57 (3%) Frame = +1 Query: 175 PLAMGAAD--EHHEEASPLLAPPADEKLPPAQDPAKGCADGVPVVMGEPVAAPAGDA 339 P A GAA E A+ APPAD PPA+ A P P APA +A Sbjct: 435 PPADGAAPPAEGAAPAAEGAAPPADGAAPPAEAAAAPADAAAPAAEAAPAEAPAAEA 491
>QIN_AVIS3 (P56260) Transforming protein Qin (Oncogene Qin)| Length = 387 Score = 32.3 bits (72), Expect = 0.28 Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 5/31 (16%) Frame = +1 Query: 160 YHHHPPLAM-----GAADEHHEEASPLLAPP 237 +HHHPP AA+E EE +PLL PP Sbjct: 51 HHHHPPPPQQPQRAAAAEEEDEEKAPLLLPP 81
>FOXGB_CHICK (Q90964) Forkhead box protein G1B (Forkhead-related protein FKHL1)| (Transcription factor BF-1) (Brain factor 1) (BF1) (CBF-1) (Proto-oncogene C-QIN) (N-62-5) (CEQ 3-1) Length = 451 Score = 32.3 bits (72), Expect = 0.28 Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 5/31 (16%) Frame = +1 Query: 160 YHHHPPLAM-----GAADEHHEEASPLLAPP 237 +HHHPP AA+E EE +PLL PP Sbjct: 51 HHHHPPPPQQPQRAAAAEEEDEEKAPLLLPP 81
>FOXGB_HUMAN (P55315) Forkhead box protein G1B (Forkhead-related protein FKHL1)| (Transcription factor BF-1) (Brain factor 1) (BF1) (HFK1) Length = 477 Score = 31.2 bits (69), Expect = 0.62 Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 4/41 (9%) Frame = +1 Query: 172 PPLA--MGAADEHHEEASP--LLAPPADEKLPPAQDPAKGC 282 PPLA G A + ++E P LL PP D PP+ A GC Sbjct: 79 PPLAPQAGGAAQSNDEKGPQLLLLPPTDHHRPPSGAKAGGC 119
>NGCA_CHICK (Q03696) Neuronal-glial cell adhesion molecule precursor (Ng-CAM)| Length = 1266 Score = 31.2 bits (69), Expect = 0.62 Identities = 16/48 (33%), Positives = 24/48 (50%) Frame = +1 Query: 199 EHHEEASPLLAPPADEKLPPAQDPAKGCADGVPVVMGEPVAAPAGDAP 342 EHH ++P+ PPA + P +G G V+ EP+ A +AP Sbjct: 685 EHHAPSAPIETPPAAPERNPGGVHGEGNETGNLVITWEPLPPQAWNAP 732
>RNE_ECOLI (P21513) Ribonuclease E (EC 3.1.4.-) (RNase E)| Length = 1061 Score = 30.8 bits (68), Expect = 0.80 Identities = 26/72 (36%), Positives = 33/72 (45%), Gaps = 3/72 (4%) Frame = +1 Query: 166 HHPPLAMGAADEHHEEA---SPLLAPPADEKLPPAQDPAKGCADGVPVVMGEPVAAPAGD 336 H +A+ + +E E P LA A +PPA PA+ A PVV P AAPA Sbjct: 506 HEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAA---PVVAPAPKAAPA-- 560 Query: 337 APRDSWDSGILS 372 P G+LS Sbjct: 561 TPAAPAQPGLLS 572
>GCP60_HUMAN (Q9H3P7) Golgi resident protein GCP60 (Acyl-CoA-binding| domain-containing protein 3) (Golgi phosphoprotein 1) (GOLPH1) (Golgi complex-associated protein 1) (GOCAP1) (PBR- and PKA-associated protein 7) (Peripherial benzodiazepine receptor-asso Length = 527 Score = 30.8 bits (68), Expect = 0.80 Identities = 18/47 (38%), Positives = 21/47 (44%) Frame = +1 Query: 211 EASPLLAPPADEKLPPAQDPAKGCADGVPVVMGEPVAAPAGDAPRDS 351 E +PLL PP LPP P G G EP A AG A ++ Sbjct: 29 EGAPLLPPP----LPPPSPPGSGRGPGASGEQPEPGEAAAGGAAEEA 71
>Y1815_ARCFU (P56969) Putative aminotransferase AF1815 (EC 2.6.1.-)| Length = 424 Score = 30.4 bits (67), Expect = 1.1 Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 1/63 (1%) Frame = +1 Query: 148 ARSGYHHHPPLAMGAADEHHEEASPLLAPP-ADEKLPPAQDPAKGCADGVPVVMGEPVAA 324 A+ GYH H A+ A DE + + LAP + A+ K D V+ E + A Sbjct: 142 AKGGYHGHTGFALAAGDEKYRKPFEPLAPGFVEVPFGDAEAVEKAVDDDTAAVLFETIPA 201 Query: 325 PAG 333 G Sbjct: 202 TLG 204
>MYBPH_CHICK (Q05623) Myosin-binding protein H (MyBP-H) (H-protein) (86 kDa| protein) Length = 537 Score = 30.4 bits (67), Expect = 1.1 Identities = 24/68 (35%), Positives = 27/68 (39%), Gaps = 9/68 (13%) Frame = +1 Query: 166 HHPPLAMGAADEHHEEASPLLAPPADEKLPPAQDPAKGCADGVPVVM---------GEPV 318 H PP E H A PPA E P A+ PA A+ P G P Sbjct: 60 HAPP-----PKEEHAPAPAAETPPAPEHPPDAEQPAAPAAEHAPTPTHEAAPAHEEGPPP 114 Query: 319 AAPAGDAP 342 AAPA +AP Sbjct: 115 AAPA-EAP 121
>PIV6_ADE40 (P48309) Minor capsid protein 6 precursor (Minor capsid protein VI)| [Contains: Protease cofactor] Length = 267 Score = 30.0 bits (66), Expect = 1.4 Identities = 23/78 (29%), Positives = 31/78 (39%), Gaps = 2/78 (2%) Frame = +1 Query: 154 SGYHHHPPLAMGAADEHHEEASP--LLAPPADEKLPPAQDPAKGCADGVPVVMGEPVAAP 327 S Y P+ A + +E+ P L PP +PP P G A P VA P Sbjct: 178 SPYPMTKPIGSMARPVYGKESKPVTLELPPPVPTVPPMPAPTLGTAVSRPTAPTVAVATP 237 Query: 328 AGDAPRDSWDSGILSCLG 381 A +W S + S +G Sbjct: 238 ARRPRGANWQSTLNSIVG 255
>SOS2_MOUSE (Q02384) Son of sevenless homolog 2 (SOS-2) (mSOS-2) (Fragment)| Length = 1297 Score = 30.0 bits (66), Expect = 1.4 Identities = 23/71 (32%), Positives = 29/71 (40%), Gaps = 3/71 (4%) Frame = +1 Query: 145 PARSGYHHHPPLAMGAADEHHEEASPLLAPPADEKLPPAQDPAKGCADGVPVVMGE---P 315 P R + H + GA + PPA +PP Q P VPV+MG P Sbjct: 1115 PPRKKFDHDALNSKGAVKSDDD-------PPA---IPPRQPPPPKVKPRVPVLMGTFDGP 1164 Query: 316 VAAPAGDAPRD 348 V +P PRD Sbjct: 1165 VPSPPPPPPRD 1175
>TENX_HUMAN (P22105) Tenascin-X precursor (TN-X) (Hexabrachion-like protein)| Length = 4289 Score = 29.6 bits (65), Expect = 1.8 Identities = 18/61 (29%), Positives = 23/61 (37%), Gaps = 6/61 (9%) Frame = +1 Query: 220 PLLAPPADEKLPPAQDPAKG------CADGVPVVMGEPVAAPAGDAPRDSWDSGILSCLG 381 P + P D ++PP+ P+ C D V G V P P W S C G Sbjct: 165 PTCSDPTDAEIPPSSPPSASGSCPDDCNDQGRCVRGRCVCFPGYTGPSCGWPSCPGDCQG 224 Query: 382 R 384 R Sbjct: 225 R 225
>FTSB_XANCP (Q8P9Z2) Cell division protein ftsB homolog| Length = 121 Score = 29.3 bits (64), Expect = 2.3 Identities = 13/21 (61%), Positives = 14/21 (66%) Frame = +1 Query: 211 EASPLLAPPADEKLPPAQDPA 273 E +PLL P A E PPAQ PA Sbjct: 92 EDAPLLPPAAQEAAPPAQPPA 112
>SYN1_RAT (P09951) Synapsin-1 (Synapsin I)| Length = 704 Score = 29.3 bits (64), Expect = 2.3 Identities = 16/53 (30%), Positives = 18/53 (33%) Frame = +1 Query: 220 PLLAPPADEKLPPAQDPAKGCADGVPVVMGEPVAAPAGDAPRDSWDSGILSCL 378 P PP P P A PVA+PA +P S G S L Sbjct: 28 PQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPSPGSSGGGGFFSSL 80
>TBX18_HUMAN (O95935) T-box transcription factor TBX18 (T-box protein 18)| Length = 607 Score = 29.3 bits (64), Expect = 2.3 Identities = 23/67 (34%), Positives = 29/67 (43%) Frame = +1 Query: 145 PARSGYHHHPPLAMGAADEHHEEASPLLAPPADEKLPPAQDPAKGCADGVPVVMGEPVAA 324 PARSG A G D + ASPL +P K PA+ A+ G P+ Sbjct: 85 PARSGADLERGAAGGCEDGFQQGASPLASPGGSPKGSPARSLAR---PGTPL-------- 133 Query: 325 PAGDAPR 345 P+ APR Sbjct: 134 PSPQAPR 140
>ZC11A_CHICK (Q5ZJJ1) Zinc finger CCCH-type domain-containing protein 11A| Length = 723 Score = 29.3 bits (64), Expect = 2.3 Identities = 14/45 (31%), Positives = 25/45 (55%) Frame = +1 Query: 169 HPPLAMGAADEHHEEASPLLAPPADEKLPPAQDPAKGCADGVPVV 303 HPP+ + AAD+ E+ L+ +E P Q PA+ +G+ ++ Sbjct: 152 HPPVVINAADD-DEDDDDQLSEEGEETKTPVQQPAEENHNGLRII 195
>CO5A1_HUMAN (P20908) Collagen alpha-1(V) chain precursor| Length = 1838 Score = 28.9 bits (63), Expect = 3.1 Identities = 23/69 (33%), Positives = 23/69 (33%), Gaps = 5/69 (7%) Frame = +1 Query: 172 PPLAMGAADEHHEEASPLLAPPADEKLPPAQDPAKGCA-----DGVPVVMGEPVAAPAGD 336 PP G E E A P K PP D KG G P GEP A Sbjct: 1301 PPGPKGERGEKGESGPSGAAGPPGPKGPPGDDGPKGSPGPVGFPGDPGPPGEPGPAGQDG 1360 Query: 337 APRDSWDSG 363 P D D G Sbjct: 1361 PPGDKGDDG 1369
>EDD1_HUMAN (O95071) Ubiquitin-protein ligase EDD1 (EC 6.3.2.-) (Hyperplastic| discs protein homolog) (hHYD) (Progestin-induced protein) Length = 2799 Score = 28.9 bits (63), Expect = 3.1 Identities = 12/30 (40%), Positives = 18/30 (60%) Frame = +1 Query: 181 AMGAADEHHEEASPLLAPPADEKLPPAQDP 270 A ++ +H + SP +APP+ PPA DP Sbjct: 1006 AGASSSDHQDPVSPPIAPPSWVPDPPAMDP 1035
>SYN1_MOUSE (O88935) Synapsin-1 (Synapsin I)| Length = 706 Score = 28.9 bits (63), Expect = 3.1 Identities = 16/53 (30%), Positives = 18/53 (33%) Frame = +1 Query: 220 PLLAPPADEKLPPAQDPAKGCADGVPVVMGEPVAAPAGDAPRDSWDSGILSCL 378 P PP P P A PVA+PA +P S G S L Sbjct: 28 PQPPPPPPSAASPGATPGSATASAERASTAAPVASPAAPSPGSSGGGGFFSSL 80
>PGCB_MOUSE (Q61361) Brevican core protein precursor| Length = 883 Score = 28.5 bits (62), Expect = 4.0 Identities = 15/44 (34%), Positives = 21/44 (47%) Frame = +1 Query: 232 PPADEKLPPAQDPAKGCADGVPVVMGEPVAAPAGDAPRDSWDSG 363 PPA+ LPP + A G V GE + PR+S ++G Sbjct: 517 PPAETLLPPREWSATSTPGGAREVGGETGSPELSGVPRESEEAG 560
>VNUA_PRVKA (P33485) Probable nuclear antigen| Length = 1733 Score = 28.5 bits (62), Expect = 4.0 Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 3/44 (6%) Frame = +1 Query: 133 TRDDPARSGYHHHPPLAMG---AADEHHEEASPLLAPPADEKLP 255 TRD P+ +HH P G + HH + P PP+ P Sbjct: 146 TRDPPSAKTHHHQDPPGGGPPSTSSHHHHQDPPGGGPPSPPPRP 189
>TRI47_MOUSE (Q8C0E3) Tripartite motif protein 47| Length = 641 Score = 28.5 bits (62), Expect = 4.0 Identities = 20/58 (34%), Positives = 24/58 (41%) Frame = +1 Query: 232 PPADEKLPPAQDPAKGCADGVPVVMGEPVAAPAGDAPRDSWDSGILSCLGRNDDFCSS 405 P A PPA +P+ CA EPV A P + LSCL FCS+ Sbjct: 103 PSAPSAPPPAPEPSAPCAPEQWPAGEEPVRCDA--CPEGAALPAALSCLSCLASFCSA 158
>DAG1_RABIT (Q28685) Dystroglycan precursor (Dystrophin-associated glycoprotein| 1) [Contains: Alpha-dystroglycan (Alpha-DG); Beta-dystroglycan (Beta-DG)] Length = 895 Score = 28.5 bits (62), Expect = 4.0 Identities = 10/21 (47%), Positives = 13/21 (61%) Frame = +1 Query: 217 SPLLAPPADEKLPPAQDPAKG 279 SP +APP + PP +DP G Sbjct: 344 SPAIAPPTETMAPPVRDPVPG 364
>DAG1_MOUSE (Q62165) Dystroglycan precursor (Dystrophin-associated glycoprotein| 1) [Contains: Alpha-dystroglycan (Alpha-DG); Beta-dystroglycan (Beta-DG)] Length = 893 Score = 28.5 bits (62), Expect = 4.0 Identities = 10/21 (47%), Positives = 13/21 (61%) Frame = +1 Query: 217 SPLLAPPADEKLPPAQDPAKG 279 SP +APP + PP +DP G Sbjct: 342 SPAIAPPTETMAPPVRDPVPG 362
>DAG1_HUMAN (Q14118) Dystroglycan precursor (Dystrophin-associated glycoprotein| 1) [Contains: Alpha-dystroglycan (Alpha-DG); Beta-dystroglycan (Beta-DG)] Length = 895 Score = 28.5 bits (62), Expect = 4.0 Identities = 10/21 (47%), Positives = 13/21 (61%) Frame = +1 Query: 217 SPLLAPPADEKLPPAQDPAKG 279 SP +APP + PP +DP G Sbjct: 344 SPAIAPPTETMAPPVRDPVPG 364
>DAG1_BOVIN (O18738) Dystroglycan precursor (Dystrophin-associated glycoprotein| 1) [Contains: Alpha-dystroglycan (Alpha-DG); Beta-dystroglycan (Beta-DG)] Length = 895 Score = 28.5 bits (62), Expect = 4.0 Identities = 10/21 (47%), Positives = 13/21 (61%) Frame = +1 Query: 217 SPLLAPPADEKLPPAQDPAKG 279 SP +APP + PP +DP G Sbjct: 344 SPAIAPPTETMAPPVRDPVPG 364
>SFPQ_HUMAN (P23246) Splicing factor, proline- and glutamine-rich| (Polypyrimidine tract-binding protein-associated splicing factor) (PTB-associated splicing factor) (PSF) (DNA-binding p52/p100 complex, 100 kDa subunit) (100-kDa DNA-pairing protein) (hPOMp Length = 707 Score = 28.5 bits (62), Expect = 4.0 Identities = 17/51 (33%), Positives = 19/51 (37%), Gaps = 5/51 (9%) Frame = +1 Query: 229 APPADEKLPPAQDPAKGCADG-----VPVVMGEPVAAPAGDAPRDSWDSGI 366 APPA PPA P G G P +AP G P SG+ Sbjct: 124 APPASSSAPPATPPTSGAPPGSGPGPTPTPPPAVTSAPPGAPPPTPPSSGV 174
>DAG1_CANFA (Q9TSZ6) Dystroglycan precursor (Dystrophin-associated glycoprotein| 1) [Contains: Alpha-dystroglycan (Alpha-DG); Beta-dystroglycan (Beta-DG)] Length = 892 Score = 28.5 bits (62), Expect = 4.0 Identities = 10/21 (47%), Positives = 13/21 (61%) Frame = +1 Query: 217 SPLLAPPADEKLPPAQDPAKG 279 SP +APP + PP +DP G Sbjct: 341 SPAIAPPTETMAPPVRDPVPG 361
>PEVRA_PIG (Q863Y7) Endogenous retrovirus A receptor precursor| Length = 446 Score = 28.1 bits (61), Expect = 5.2 Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 1/32 (3%) Frame = +1 Query: 181 AMGAADEHHEEASPLLAPPADEK-LPPAQDPA 273 A G +E EEASPL PP+ P+ DPA Sbjct: 237 APGVEEEEEEEASPLQEPPSQAAGNTPSPDPA 268
>APA_MYCTU (Q50906) Alanine and proline-rich secreted protein apa precursor| (45/47 kDa antigen) (Fibronectin attachment protein) (Immunogenic protein MPT32) (Antigen MPT-32) (45-kDa glycoprotein) (FAP-B) Length = 325 Score = 28.1 bits (61), Expect = 5.2 Identities = 19/57 (33%), Positives = 22/57 (38%) Frame = +1 Query: 175 PLAMGAADEHHEEASPLLAPPADEKLPPAQDPAKGCADGVPVVMGEPVAAPAGDAPR 345 P+ GAA E PL+AP PPA PA P GE P P+ Sbjct: 270 PVDKGAAKALAESIRPLVAP------PPAPAPAPAEPAPAPAPAGEVAPTPTTPTPQ 320
>APA_MYCBO (O30620) Alanine and proline-rich secreted protein apa precursor| (Fibronectin attachment protein) (45/47 kDa antigen) (FAP-B) Length = 325 Score = 28.1 bits (61), Expect = 5.2 Identities = 19/57 (33%), Positives = 22/57 (38%) Frame = +1 Query: 175 PLAMGAADEHHEEASPLLAPPADEKLPPAQDPAKGCADGVPVVMGEPVAAPAGDAPR 345 P+ GAA E PL+AP PPA PA P GE P P+ Sbjct: 270 PVDKGAAKALAESIRPLVAP------PPAPAPAPAEPAPAPAPAGEVAPTPTTPTPQ 320
>XP2_XENLA (P17437) Skin secretory protein xP2 precursor (APEG protein)| Length = 439 Score = 28.1 bits (61), Expect = 5.2 Identities = 21/57 (36%), Positives = 24/57 (42%) Frame = +1 Query: 172 PPLAMGAADEHHEEASPLLAPPADEKLPPAQDPAKGCADGVPVVMGEPVAAPAGDAP 342 P A G A E +P AP E PA PA+G A GE A G+AP Sbjct: 103 PAPAEGGAPAPAEGGAPAPAPAEGEA--PAPAPAEGEAPAPAPAEGEAPAPAEGEAP 157
>RS2_STRAW (Q82JX7) 30S ribosomal protein S2| Length = 308 Score = 28.1 bits (61), Expect = 5.2 Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 2/58 (3%) Frame = +1 Query: 175 PLAMGAAD--EHHEEASPLLAPPADEKLPPAQDPAKGCADGVPVVMGEPVAAPAGDAP 342 PLA D E ++A AP A E PA+ A+ A P APA +AP Sbjct: 244 PLAAWERDLLEGEKKADEAEAPAAAEAEKPAEAAAEAPAAEAPAAEAPAAEAPAAEAP 301
>KLH14_HUMAN (Q9P2G3) Kelch-like protein 14| Length = 628 Score = 27.7 bits (60), Expect = 6.8 Identities = 17/59 (28%), Positives = 25/59 (42%) Frame = +1 Query: 151 RSGYHHHPPLAMGAADEHHEEASPLLAPPADEKLPPAQDPAKGCADGVPVVMGEPVAAP 327 RS + HPPL G + L P D++ PP Q P++ G P ++P Sbjct: 59 RSLFSSHPPLGGGVGGQDG------LGAPKDQQQPPQQQPSQQQQPPPQEEPGTPSSSP 111
>HELZ_HUMAN (P42694) Probable helicase with zinc-finger domain (EC 3.6.1.-)| Length = 1942 Score = 27.7 bits (60), Expect = 6.8 Identities = 10/26 (38%), Positives = 13/26 (50%) Frame = +1 Query: 136 RDDPARSGYHHHPPLAMGAADEHHEE 213 R P G HHPP+ +G H+E Sbjct: 1245 RGSPIPYGLGHHPPVTIGQPQNQHQE 1270
>BAT2_RAT (Q6MG48) Large proline-rich protein BAT2 (HLA-B-associated transcript| 2) Length = 2161 Score = 27.7 bits (60), Expect = 6.8 Identities = 18/75 (24%), Positives = 32/75 (42%) Frame = +1 Query: 142 DPARSGYHHHPPLAMGAADEHHEEASPLLAPPADEKLPPAQDPAKGCADGVPVVMGEPVA 321 +P+ SG +P + G+ + + S P D +L P+ + V +P+ Sbjct: 1827 EPSPSGQRLYPEVFYGSPGPPNSQVSG--GAPIDSQLHPSSGGFRPGTPSVHQYRSQPLY 1884 Query: 322 APAGDAPRDSWDSGI 366 P G AP + SG+ Sbjct: 1885 LPPGPAPPSALLSGV 1899
>EDD1_MOUSE (Q80TP3) Ubiquitin-protein ligase EDD1 (EC 6.3.2.-) (Hyperplastic| discs protein homolog) Length = 2792 Score = 27.7 bits (60), Expect = 6.8 Identities = 11/30 (36%), Positives = 18/30 (60%) Frame = +1 Query: 181 AMGAADEHHEEASPLLAPPADEKLPPAQDP 270 A ++ +H + SP +APP+ PP+ DP Sbjct: 1000 AGASSSDHQDPVSPPIAPPSWVPDPPSMDP 1029
>SPEN_DROME (Q8SX83) Protein split ends| Length = 5560 Score = 27.7 bits (60), Expect = 6.8 Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 2/44 (4%) Frame = +1 Query: 136 RDDPARSGYHHHPPLAMGAADEHHEEASPLLA--PPADEKLPPA 261 RD + G HHHP AM + + S + A E LPPA Sbjct: 5326 RDGSVQPGSHHHPGKAMDMQLDEMDRMSMIAAVVQQQQEHLPPA 5369
>MUTS_BURPS (Q63SR9) DNA mismatch repair protein mutS| Length = 890 Score = 27.7 bits (60), Expect = 6.8 Identities = 14/41 (34%), Positives = 18/41 (43%) Frame = +1 Query: 166 HHPPLAMGAADEHHEEASPLLAPPADEKLPPAQDPAKGCAD 288 HHPP A AA H+ LL P + L + + AD Sbjct: 326 HHPPRASVAAQARHQAIGALLDAPPNAGLDSLRSALRQIAD 366
>MUTS_BURP1 (Q3JQS6) DNA mismatch repair protein mutS| Length = 890 Score = 27.7 bits (60), Expect = 6.8 Identities = 14/41 (34%), Positives = 18/41 (43%) Frame = +1 Query: 166 HHPPLAMGAADEHHEEASPLLAPPADEKLPPAQDPAKGCAD 288 HHPP A AA H+ LL P + L + + AD Sbjct: 326 HHPPRASVAAQARHQAIGALLDAPPNAGLDSLRSALRQIAD 366
>INO80_NEUCR (Q872I5) Putative DNA helicase ino-80 (EC 3.6.1.-)| Length = 2001 Score = 27.7 bits (60), Expect = 6.8 Identities = 17/54 (31%), Positives = 24/54 (44%) Frame = +1 Query: 163 HHHPPLAMGAADEHHEEASPLLAPPADEKLPPAQDPAKGCADGVPVVMGEPVAA 324 HHHP + A+ A L PP+ + PPA P G + P P++A Sbjct: 183 HHHPNPFVAAS------APSLPPPPSSLQAPPAITPIAGLSAPAPASGSLPLSA 230
>FOXD2_HUMAN (O60548) Forkhead box protein D2 (Forkhead-related protein FKHL17)| (Forkhead-related transcription factor 9) (FREAC-9) Length = 497 Score = 27.7 bits (60), Expect = 6.8 Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 3/69 (4%) Frame = +1 Query: 145 PARSGYHHHPPLAMGAADEHHEEASPLLAPPADEK---LPPAQDPAKGCADGVPVVMGEP 315 PARSG P HE PPA+E L ++ + GC+DG P + Sbjct: 40 PARSG----PRAPRDVLPHGHE-------PPAEEAEADLAEDEEESGGCSDGEPRALASR 88 Query: 316 VAAPAGDAP 342 AA A +P Sbjct: 89 GAAAAAGSP 97
>MINT_MOUSE (Q62504) Msx2-interacting protein (SPEN homolog)| (SMART/HDAC1-associated repressor protein) Length = 3644 Score = 27.7 bits (60), Expect = 6.8 Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 4/70 (5%) Frame = +1 Query: 175 PLAMGAADEHHEEASPLLAPPADEKLPPA--QDPAKGCADGVPVVMGEPVAA--PAGDAP 342 P +A E EEA+ +P ++ PA + K ++ V V + +P + P G+ Sbjct: 1664 PEPASSAPEKAEEAAEAPSPAGEKPAEPAPVSEETKLVSEPVSVPVEQPRQSDVPPGEDS 1723 Query: 343 RDSWDSGILS 372 RDS DS L+ Sbjct: 1724 RDSQDSAALA 1733
>ZCHC8_XENLA (Q6DD45) Zinc finger CCHC domain-containing protein 8| Length = 743 Score = 27.7 bits (60), Expect = 6.8 Identities = 19/66 (28%), Positives = 24/66 (36%) Frame = +1 Query: 148 ARSGYHHHPPLAMGAADEHHEEASPLLAPPADEKLPPAQDPAKGCADGVPVVMGEPVAAP 327 A GY HPPL G+ P PP+ P P P+ G P P Sbjct: 447 ASKGYMFHPPLPPGSPSYGTPPPLPRGTPPSTP--PNFIPPPPPTPTPPPLPKGTPPPTP 504 Query: 328 AGDAPR 345 D+P+ Sbjct: 505 NRDSPK 510
>RSSA_STRPU (P46771) 40S ribosomal protein SA (p40) (34/67 kDa laminin-binding| protein) (Fragment) Length = 264 Score = 27.7 bits (60), Expect = 6.8 Identities = 21/65 (32%), Positives = 26/65 (40%) Frame = +1 Query: 211 EASPLLAPPADEKLPPAQDPAKGCADGVPVVMGEPVAAPAGDAPRDSWDSGILSCLGRND 390 +AS + AP A P++D A PV AAPA AP W + ND Sbjct: 202 DASKVAAPAAAPAAFPSEDWGSVDAPAAPVAPA--AAAPAAAAPSQDWSTDDWGGAATND 259 Query: 391 DFCSS 405 SS Sbjct: 260 WAVSS 264
>BACH2_HUMAN (Q9BYV9) Transcription regulator protein BACH2 (BTB and CNC homolog| 2) Length = 841 Score = 27.7 bits (60), Expect = 6.8 Identities = 22/79 (27%), Positives = 32/79 (40%), Gaps = 4/79 (5%) Frame = +1 Query: 136 RDDPARSGYHHHPPLAMGAADEHHEEA----SPLLAPPADEKLPPAQDPAKGCADGVPVV 303 R D A H + G ++ EE + +A P D+ LP +P A +PV Sbjct: 144 RKDAACQRPHEDCENSAGEEEDEEEETMDSETAKMACPRDQMLP---EPISFEAAAIPVA 200 Query: 304 MGEPVAAPAGDAPRDSWDS 360 E P D P D+ +S Sbjct: 201 EKEEALLPEPDVPTDTKES 219
>APX8_ORYSA (Q69SV0) Probable L-ascorbate peroxidase 8, chloroplast precursor| (EC 1.11.1.11) Length = 478 Score = 27.7 bits (60), Expect = 6.8 Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 3/63 (4%) Frame = +1 Query: 157 GYHHHPPLAMGAADE---HHEEASPLLAPPADEKLPPAQDPAKGCADGVPVVMGEPVAAP 327 G PP DE ++ P AP A PP ++ + VPV +G VA+ Sbjct: 345 GAKFDPPEGFSLDDEPAVEEKDPEPAPAPAAAPPPPPVEEKKEAEPTPVPVTVGAAVASS 404 Query: 328 AGD 336 D Sbjct: 405 PAD 407
>HERC2_DROME (Q9VR91) HECT domain and RCC1-like domain-containing protein 2| Length = 4912 Score = 27.7 bits (60), Expect = 6.8 Identities = 10/26 (38%), Positives = 17/26 (65%) Frame = +1 Query: 289 GVPVVMGEPVAAPAGDAPRDSWDSGI 366 G P+ + E +A G+AP D+ D+G+ Sbjct: 3466 GAPLQLAETIAQGGGEAPADATDAGL 3491
>FBX46_HUMAN (Q6PJ61) F-box only protein 46 (F-box only protein 34-like)| Length = 646 Score = 27.7 bits (60), Expect = 6.8 Identities = 15/46 (32%), Positives = 19/46 (41%) Frame = +1 Query: 145 PARSGYHHHPPLAMGAADEHHEEASPLLAPPADEKLPPAQDPAKGC 282 P+R + + ADE E SP A P D P PA+ C Sbjct: 314 PSRDALPSNVEFLLARADEASEGDSPAPARPEDTPPAPPPPPARDC 359
>DVL3_HUMAN (Q92997) Segment polarity protein dishevelled homolog DVL-3| (Dishevelled-3) (DSH homolog 3) Length = 716 Score = 27.7 bits (60), Expect = 6.8 Identities = 22/69 (31%), Positives = 24/69 (34%), Gaps = 2/69 (2%) Frame = +1 Query: 136 RDDPARSGYHH--HPPLAMGAADEHHEEASPLLAPPADEKLPPAQDPAKGCADGVPVVMG 309 R PA S + H H LA H P PP +PP P P MG Sbjct: 624 RSGPAASEHSHRSHHSLASSLRSHH---THPSYGPPG---VPPLYGPPMLMMPPPPAAMG 677 Query: 310 EPVAAPAGD 336 P A P D Sbjct: 678 PPGAPPGRD 686
>CAPON_HUMAN (O75052) Carboxyl-terminal PDZ ligand of neuronal nitric oxide| synthase protein (C--terminal PDZ ligand of neuronal nitric oxide synthase protein) (Nitric oxide synthase 1 adaptor protein) Length = 506 Score = 27.7 bits (60), Expect = 6.8 Identities = 19/49 (38%), Positives = 19/49 (38%), Gaps = 13/49 (26%) Frame = +1 Query: 166 HHPPLAMGAADEHHEEASPL-------------LAPPADEKLPPAQDPA 273 H PPL G AD H SPL PP D PPAQ A Sbjct: 400 HSPPLGAGLADFAHPAGSPLGRRDCLVKLECFRFLPPEDTP-PPAQGEA 447
>MUTS_BURS3 (Q39EX8) DNA mismatch repair protein mutS| Length = 885 Score = 27.7 bits (60), Expect = 6.8 Identities = 14/41 (34%), Positives = 18/41 (43%) Frame = +1 Query: 166 HHPPLAMGAADEHHEEASPLLAPPADEKLPPAQDPAKGCAD 288 HHPP A AA + LL PA+ L + + AD Sbjct: 318 HHPPRASVAAQSRQQAIGALLDAPANASLDALRSALRQIAD 358
>MUTS_BURMA (Q62J26) DNA mismatch repair protein mutS| Length = 891 Score = 27.7 bits (60), Expect = 6.8 Identities = 14/41 (34%), Positives = 18/41 (43%) Frame = +1 Query: 166 HHPPLAMGAADEHHEEASPLLAPPADEKLPPAQDPAKGCAD 288 HHPP A AA H+ LL P + L + + AD Sbjct: 326 HHPPRASVAAQARHQAIGALLDAPPNAGLDSLRSALRQIAD 366
>PTPRN_HUMAN (Q16849) Receptor-type tyrosine-protein phosphatase-like N| precursor (R-PTP-N) (PTP IA-2) (Islet cell antigen 512) (ICA 512) (Islet cell autoantigen 3) Length = 979 Score = 27.7 bits (60), Expect = 6.8 Identities = 19/72 (26%), Positives = 28/72 (38%), Gaps = 4/72 (5%) Frame = +1 Query: 133 TRDDPARSGYHHHPPLAMGAADEHHEEASPLLAPPADEKLPPAQ----DPAKGCADGVPV 300 T + PAR+ P A + E + SP+ + P PP + P Sbjct: 398 TAELPARTSPMPGHPTASPTSSEVQQVPSPVSSEPPKAARPPVTPVLLEKKSPLGQSQPT 457 Query: 301 VMGEPVAAPAGD 336 V G+P A PA + Sbjct: 458 VAGQPSARPAAE 469
>MEGF8_HUMAN (Q7Z7M0) Multiple epidermal growth factor-like domains 8 (EGF-like| domain-containing protein 4) (Multiple EGF-like domain protein 4) Length = 2386 Score = 27.7 bits (60), Expect = 6.8 Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 8/48 (16%) Frame = +1 Query: 253 PPAQDPAKGCADGVPVVMGEPVAAPAGDAP--------RDSWDSGILS 372 PPA P ADG P G+P A A P R+ W G+++ Sbjct: 2070 PPAPPPPPPPADGGPRGAGDPGGAGASSGPGAPAEPRVREVWPRGLIT 2117
>CAR10_HUMAN (Q9BWT7) Caspase recruitment domain-containing protein 10| (CARD-containing MAGUK protein 3) (Carma 3) Length = 1032 Score = 27.7 bits (60), Expect = 6.8 Identities = 13/36 (36%), Positives = 19/36 (52%) Frame = +1 Query: 235 PADEKLPPAQDPAKGCADGVPVVMGEPVAAPAGDAP 342 P+ P + K D + +V +PV APAGD+P Sbjct: 781 PSSRHRGPRSNLKKRALDQLRLVRPKPVGAPAGDSP 816
>Y2082_MYCTU (Q10690) Hypothetical protein Rv2082| Length = 721 Score = 27.3 bits (59), Expect = 8.9 Identities = 14/39 (35%), Positives = 17/39 (43%) Frame = +1 Query: 226 LAPPADEKLPPAQDPAKGCADGVPVVMGEPVAAPAGDAP 342 +APP + A A+G P P AAPAG P Sbjct: 387 IAPPTTDNASAMTPIAPMVANGPPASPAPPAAAPAGPLP 425
>UL17_HHV11 (P10201) Protein UL17| Length = 703 Score = 27.3 bits (59), Expect = 8.9 Identities = 18/53 (33%), Positives = 23/53 (43%) Frame = +1 Query: 178 LAMGAADEHHEEASPLLAPPADEKLPPAQDPAKGCADGVPVVMGEPVAAPAGD 336 L+MG + PL P A PA P G +D P+ E + AP GD Sbjct: 196 LSMGLGESASPRPQPLARPHAGA---PADPPIVGASDP-PISPEEQLTAPGGD 244
>TARA_HUMAN (Q9H2D6) TRIO and F-actin-binding protein (Protein Tara)| (Trio-associated repeat on actin) Length = 2365 Score = 27.3 bits (59), Expect = 8.9 Identities = 21/71 (29%), Positives = 26/71 (36%), Gaps = 8/71 (11%) Frame = +1 Query: 163 HHHPPLAMGAADEHHEEASPLLAPPADEK------LPPAQDPAKGC--ADGVPVVMGEPV 318 HH PP A H +A +PP + LP D C P+ + PV Sbjct: 1053 HHEPPYIPPAVCIGHRDAPRASSPPRHTQFDPFPFLPDTSDAEHQCQSPQHEPLQLPAPV 1112 Query: 319 AAPAGDAPRDS 351 DAPR S Sbjct: 1113 CIGYRDAPRAS 1123
>NEUM_BOVIN (P06836) Neuromodulin (Axonal membrane protein GAP-43)| (Growth-associated protein 43) (Calmodulin-binding protein P-57) Length = 239 Score = 27.3 bits (59), Expect = 8.9 Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 2/62 (3%) Frame = +1 Query: 172 PPLAMGAADEHHEEASPLLAPPADEKLPPA--QDPAKGCADGVPVVMGEPVAAPAGDAPR 345 P GA D E+A+P P++EK A + K D P E APA + P+ Sbjct: 110 PKKGEGAPDAATEQAAPQAPAPSEEKAGSAETESATKASTDNSPSSKAED--APAKEEPK 167 Query: 346 DS 351 + Sbjct: 168 QA 169
>GLU2B_MOUSE (O08795) Glucosidase 2 beta subunit precursor (Glucosidase II beta| subunit) (Protein kinase C substrate, 60.1 kDa protein, heavy chain) (PKCSH) (80K-H protein) Length = 521 Score = 27.3 bits (59), Expect = 8.9 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 6/37 (16%) Frame = +1 Query: 196 DEHHEEASPLLAPPA------DEKLPPAQDPAKGCAD 288 +E EEA P L PP DEK+PP + + D Sbjct: 325 EEEEEEAPPPLQPPQPPSPTEDEKMPPYDEETQAIID 361
>ICP0_HHV2H (P28284) Trans-acting transcriptional protein ICP0 (VMW118 protein)| Length = 825 Score = 27.3 bits (59), Expect = 8.9 Identities = 15/43 (34%), Positives = 20/43 (46%) Frame = +1 Query: 208 EEASPLLAPPADEKLPPAQDPAKGCADGVPVVMGEPVAAPAGD 336 + A+P PPA+ + P A+G G PV E A GD Sbjct: 82 DAATPPARPPAERQGSPTPADAQGSCGGGPVGEEEAEAGGGGD 124
>GNDS_RAT (Q03386) Ral guanine nucleotide dissociation stimulator (RalGEF)| (RalGDS) Length = 895 Score = 27.3 bits (59), Expect = 8.9 Identities = 17/55 (30%), Positives = 25/55 (45%) Frame = +1 Query: 172 PPLAMGAADEHHEEASPLLAPPADEKLPPAQDPAKGCADGVPVVMGEPVAAPAGD 336 P L++ A + + LL P P ++PA VPV+ PV APA + Sbjct: 253 PVLSLKPASQLEPAPALLLTPSRAVASTPVREPAP-----VPVLASSPVVAPASE 302
>FTSK_BRAJA (Q89WR2) DNA translocase ftsK| Length = 825 Score = 27.3 bits (59), Expect = 8.9 Identities = 15/51 (29%), Positives = 24/51 (47%) Frame = +1 Query: 133 TRDDPARSGYHHHPPLAMGAADEHHEEASPLLAPPADEKLPPAQDPAKGCA 285 +R +P G PP++ + DE +EE +E+ P A+ P K A Sbjct: 259 SRQEPNLGGGRAAPPISPRSEDEDYEEEHEEEEDEEEEEEPAARAPRKKAA 309
>TAF4_HUMAN (O00268) Transcription initiation factor TFIID subunit 4| (Transcription initiation factor TFIID 135 kDa subunit) (TAF(II)135) (TAFII-135) (TAFII135) (TAFII-130) (TAFII130) Length = 1085 Score = 27.3 bits (59), Expect = 8.9 Identities = 16/39 (41%), Positives = 18/39 (46%), Gaps = 2/39 (5%) Frame = +1 Query: 229 APPADEKLPPAQDPAKGCA--DGVPVVMGEPVAAPAGDA 339 APPA + PP + A CA V P APAG A Sbjct: 120 APPAAKLRPPPEGSAGSCAPVPAAAAVAAGPEPAPAGPA 158
>PFTA_RAT (Q04631) Protein farnesyltransferase/geranylgeranyltransferase type| I alpha subunit (EC 2.5.1.58) (EC 2.5.1.59) (CAAX farnesyltransferase alpha subunit) (Ras proteins prenyltransferase alpha) (FTase-alpha) (Type I protein geranyl-geranyltransfer Length = 377 Score = 27.3 bits (59), Expect = 8.9 Identities = 17/47 (36%), Positives = 20/47 (42%) Frame = +1 Query: 232 PPADEKLPPAQDPAKGCADGVPVVMGEPVAAPAGDAPRDSWDSGILS 372 PP PPAQ P + E +AA AG+A D G LS Sbjct: 22 PPPPPPPPPAQQPQE-----------EEMAAEAGEAAASPMDDGFLS 57
>PFTA_MOUSE (Q61239) Protein farnesyltransferase/geranylgeranyltransferase type| I alpha subunit (EC 2.5.1.58) (EC 2.5.1.59) (CAAX farnesyltransferase alpha subunit) (Ras proteins prenyltransferase alpha) (FTase-alpha) (Type I protein geranyl-geranyltransf Length = 377 Score = 27.3 bits (59), Expect = 8.9 Identities = 17/47 (36%), Positives = 20/47 (42%) Frame = +1 Query: 232 PPADEKLPPAQDPAKGCADGVPVVMGEPVAAPAGDAPRDSWDSGILS 372 PP PPAQ P + E +AA AG+A D G LS Sbjct: 22 PPPPPPPPPAQQPQE-----------EEMAAEAGEAAASPMDDGFLS 57
>PEXLP_TOBAC (Q03211) Pistil-specific extensin-like protein precursor (PELP)| Length = 426 Score = 27.3 bits (59), Expect = 8.9 Identities = 14/42 (33%), Positives = 19/42 (45%) Frame = +1 Query: 217 SPLLAPPADEKLPPAQDPAKGCADGVPVVMGEPVAAPAGDAP 342 SPLL PP PP P+ A P++ P +P + P Sbjct: 229 SPLLPPPPPVAYPPVMTPSPSPAAEPPII--APFPSPPANPP 268
>GR65_HUMAN (Q9BQQ3) Golgi reassembly-stacking protein 1 (Golgi| reassembly-stacking protein of 65 kDa) (GRASP65) (Golgi peripheral membrane protein p65) (Golgi phosphoprotein 5) (GOLPH5) Length = 439 Score = 27.3 bits (59), Expect = 8.9 Identities = 15/40 (37%), Positives = 16/40 (40%) Frame = +1 Query: 232 PPADEKLPPAQDPAKGCADGVPVVMGEPVAAPAGDAPRDS 351 PP+ K PP P G P P A P G P DS Sbjct: 205 PPSYHKKPPGTPPPSALPLGAP----PPDALPPGPTPEDS 240
>ALK_MOUSE (P97793) ALK tyrosine kinase receptor precursor (EC 2.7.10.1)| (Anaplastic lymphoma kinase) (CD246 antigen) Length = 1621 Score = 27.3 bits (59), Expect = 8.9 Identities = 22/70 (31%), Positives = 24/70 (34%), Gaps = 6/70 (8%) Frame = +1 Query: 172 PPLAMGAADEHHEEAS------PLLAPPADEKLPPAQDPAKGCADGVPVVMGEPVAAPAG 333 PPL + HEEAS L AP K PP G G AG Sbjct: 1426 PPLLVSPQPAKHEEASAAPQPAALTAPGPSVKKPPGAGAGAGAGAG------------AG 1473 Query: 334 DAPRDSWDSG 363 PR + D G Sbjct: 1474 PVPRGAADRG 1483 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.317 0.137 0.449 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 31,887,790 Number of Sequences: 219361 Number of extensions: 523390 Number of successful extensions: 2614 Number of sequences better than 10.0: 70 Number of HSP's better than 10.0 without gapping: 2416 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2591 length of database: 80,573,946 effective HSP length: 110 effective length of database: 56,444,236 effective search space used: 1354661664 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits)
