>COPD_YEAST (P43621) Coatomer subunit delta (Delta-coat protein) (Delta-COP)|
          Length = 545

 Score = 33.1 bits (74), Expect = 0.33
 Identities = 20/66 (30%), Positives = 26/66 (39%)
 Frame = -2

Query: 428 SYLAPADQGRWLSDPATSARLIRFRCARVNAEGGREREVGIVPNPSCEKSMDGGSDPAPA 249
           S+ A A+     S  ATS R        +   GG  R  G  P PS   S   G+ P P 
Sbjct: 222 SHAAAAEVAPVASPMATSQRAGHSATGGMKLGGGAGRRAGAAPRPSAISSASSGTPPPPE 281

Query: 248 RESPRS 231
            + P +
Sbjct: 282 EDVPEN 287

>PHNC1_HALMA (Q5V6B8) Phosphonates import ATP-binding protein phnC 1 (EC|
           3.6.3.28)
          Length = 273

 Score = 31.2 bits (69), Expect = 1.3
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -1

Query: 453 SSDQAQELLIPGASRPGTMVERSGNERSPD 364
           + DQ   L   GAS PGT  ER+G E+  D
Sbjct: 237 TDDQLDALFAAGASTPGTDAERTGTEKESD 266

>VGLG_VHSV0 (P27662) Spike glycoprotein precursor|
          Length = 507

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = +1

Query: 310 PTSLSLPPSALTRAHLNRIRRALVAGSLNHRPW 408
           PTS +L     TR H +R+ +A+VAG   H PW
Sbjct: 216 PTSETLEGHLFTRTHDHRVVKAIVAG---HHPW 245

>CS021_PONPY (Q5RBH3) Protein C19orf21 homolog|
          Length = 685

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 15/36 (41%), Positives = 17/36 (47%)
 Frame = -3

Query: 325 ERERWG*YQTQAARNPWTAAQIPRQPEKALDRNPPP 218
           ERERW   Q QA R   T A +   P+    R P P
Sbjct: 140 ERERWAIIQGQAVRKSGTVATLQAAPDHGDPRTPGP 175

>TACC3_HUMAN (Q9Y6A5) Transforming acidic coiled-coil-containing protein 3|
           (ERIC-1)
          Length = 838

 Score = 30.0 bits (66), Expect = 2.8
 Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +1

Query: 124 SPPPRRIAHRLGGPSGL-PPAREXXXXXXXXXXXXXFDRGLSRAGAGSEPP 273
           +PPPRR+  R    SGL PP R+              D G  R+GAG +PP
Sbjct: 351 APPPRRLGER----SGLKPPLRKAAVRQQKAPQEVEEDDG--RSGAGEDPP 395

>CS021_HUMAN (Q8IVT2) Protein C19orf21|
          Length = 679

 Score = 29.6 bits (65), Expect = 3.7
 Identities = 15/36 (41%), Positives = 17/36 (47%)
 Frame = -3

Query: 325 ERERWG*YQTQAARNPWTAAQIPRQPEKALDRNPPP 218
           ERERW   Q QA R   T A +   P+    R P P
Sbjct: 140 ERERWAVIQGQAVRKSSTVATLQGTPDHGDPRTPGP 175

>RX_HUMAN (Q9Y2V3) Retinal homeobox protein Rx (Retina and anterior neural|
           fold homeobox protein)
          Length = 346

 Score = 29.6 bits (65), Expect = 3.7
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -2

Query: 350 ARVNAEGGREREVGIVPNPSCEKSMDGGSDPAP 252
           A   A G +ER+  +   P+C K+ + GS+P+P
Sbjct: 53  AERGARGAKERDRRLGARPACPKAPEEGSEPSP 85

>PDE4C_RAT (P14644) cAMP-specific 3',5'-cyclic phosphodiesterase 4C (EC|
           3.1.4.17) (DPDE1) (Fragment)
          Length = 536

 Score = 28.9 bits (63), Expect = 6.3
 Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
 Frame = -2

Query: 395 LSDPATSARLIRFRCARVNAE----GGREREVGIVPNPSCEK 282
           LS+PA    L R    R+ AE    G RERE G+  +P C+K
Sbjct: 413 LSNPAKPLPLYRQWTERIMAEFFQQGDRERESGLDISPMCDK 454

>MLE_DROME (P24785) Dosage compensation regulator (EC 3.6.1.-) (ATP-dependent|
            RNA helicase mle) (Protein male-less) (Protein no action
            potential)
          Length = 1293

 Score = 28.9 bits (63), Expect = 6.3
 Identities = 18/57 (31%), Positives = 29/57 (50%)
 Frame = -2

Query: 416  PADQGRWLSDPATSARLIRFRCARVNAEGGREREVGIVPNPSCEKSMDGGSDPAPAR 246
            P+D  R     A   ++++  C +   + G +RE GI+P+ S + S DGG  P   R
Sbjct: 1126 PSDILRLEEPYAQLVKVVKDLCVKSAGDFGLQRESGILPHQSRQFS-DGGGPPKRGR 1181

>PLCB4_RAT (Q9QW07) 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase|
           beta 4 (EC 3.1.4.11) (Phosphoinositide phospholipase C)
           (Phospholipase C-beta-4) (PLC-beta-4)
          Length = 1175

 Score = 28.9 bits (63), Expect = 6.3
 Identities = 15/55 (27%), Positives = 27/55 (49%)
 Frame = -2

Query: 395 LSDPATSARLIRFRCARVNAEGGREREVGIVPNPSCEKSMDGGSDPAPARESPRS 231
           LSDP     +   R  ++ A G    ++  VP+ + +    G ++PA A  +P+S
Sbjct: 835 LSDPKKFLSITEKRADQLRAMGIETSDIADVPSDTSKNDKKGKANPAKANVTPQS 889

>PDE4C_MOUSE (Q3UEI1) cAMP-specific 3',5'-cyclic phosphodiesterase 4C (EC|
           3.1.4.17)
          Length = 686

 Score = 28.9 bits (63), Expect = 6.3
 Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
 Frame = -2

Query: 395 LSDPATSARLIRFRCARVNAE----GGREREVGIVPNPSCEK 282
           LS+PA    L R    R+ AE    G RERE G+  +P C+K
Sbjct: 548 LSNPAKPLPLYRQWTERIMAEFFQQGDRERESGLDISPMCDK 589

>FTSK_COREF (Q8FPC1) DNA translocase ftsK|
          Length = 946

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = -2

Query: 260 PAPARESPRSKXXXXXXXXXXXXASRAGGSPEGPP 156
           PAPA++S R                R+G  P+GPP
Sbjct: 359 PAPAKDSARDAVAASRENLRQAMIQRSGMDPQGPP 393


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,470,992
Number of Sequences: 219361
Number of extensions: 1089466
Number of successful extensions: 3024
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2938
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3022
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2793557952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)