ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart51c11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1UDU2_ARATH (Q9FHD4) DUF26 domain-containing protein 2 precursor 45 9e-05
2UDU1_ARATH (Q9FHD5) DUF26 domain-containing protein 1 precursor 44 3e-04
3UDU3_ARATH (Q9FHD3) Hypothetical DUF26 domain-containing protein... 41 0.001

>UDU2_ARATH (Q9FHD4) DUF26 domain-containing protein 2 precursor|
          Length = 287

 Score = 45.1 bits (105), Expect = 9e-05
 Identities = 29/107 (27%), Positives = 46/107 (42%), Gaps = 4/107 (3%)
 Frame = +1

Query: 154 SGVDAIGTYCAK---NGTSAET-QASIDQVLAALVPXXXXXXXXXXXXXXXXXXVWGLAQ 321
           S  D + T+C K   N TS  T   +++ +L+ L                    V G+  
Sbjct: 24  SDPDDMETFCMKSSRNTTSNTTYNKNLNTLLSTLSNQSSFANYYNLTTGLASDTVHGMFL 83

Query: 322 CRGDVPRQDCSLCLAAAAKEVASSCRGSSDGRVFYDYCLLRYSTANF 462
           C GDV R  C+ C+  A  E+A +C    +  ++   C++RYS   F
Sbjct: 84  CTGDVNRTTCNACVKNATIEIAKNCTNHREAIIYNVDCMVRYSDKFF 130



 Score = 31.6 bits (70), Expect = 1.1
 Identities = 12/49 (24%), Positives = 24/49 (48%)
 Frame = +1

Query: 313 LAQCRGDVPRQDCSLCLAAAAKEVASSCRGSSDGRVFYDYCLLRYSTAN 459
           + QC  D+  ++C+ CL  A +E+   C       ++   C++ + T N
Sbjct: 197 IVQCTPDLDPRNCTTCLKLALQELTECCGNQVWAFIYTPNCMVSFDTYN 245



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>UDU1_ARATH (Q9FHD5) DUF26 domain-containing protein 1 precursor|
          Length = 286

 Score = 43.5 bits (101), Expect = 3e-04
 Identities = 19/53 (35%), Positives = 29/53 (54%)
 Frame = +1

Query: 304 VWGLAQCRGDVPRQDCSLCLAAAAKEVASSCRGSSDGRVFYDYCLLRYSTANF 462
           V G+  C GDV R  C+ C+  A  E+A +C    +  ++Y  C++RYS   F
Sbjct: 79  VHGMFLCIGDVNRTTCNACVKNATIEIAKNCTNHREAIIYYFSCMVRYSDKFF 131



 Score = 31.2 bits (69), Expect = 1.4
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = +1

Query: 313 LAQCRGDVPRQDCSLCLAAAAKEVASSCRGSSDGRVFYDYCLLRYSTAN 459
           + QC   +  ++C+ CL  A +E+   C       +F   CL+ + T+N
Sbjct: 198 VVQCSPHLDPKNCTTCLKLALQELTQCCGDQLWAFIFTPKCLVSFDTSN 246



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>UDU3_ARATH (Q9FHD3) Hypothetical DUF26 domain-containing protein 3 precursor|
          Length = 287

 Score = 41.2 bits (95), Expect = 0.001
 Identities = 25/107 (23%), Positives = 45/107 (42%), Gaps = 4/107 (3%)
 Frame = +1

Query: 154 SGVDAIGTYC---AKNGTSAET-QASIDQVLAALVPXXXXXXXXXXXXXXXXXXVWGLAQ 321
           S  D + T+C   ++N T   T   +++ +L+                      V+G+  
Sbjct: 28  SETDHMDTFCIDSSRNTTGNTTYNKNLNTMLSTFRNQSSIVNNYNLTTGLASDTVYGMFL 87

Query: 322 CRGDVPRQDCSLCLAAAAKEVASSCRGSSDGRVFYDYCLLRYSTANF 462
           C GDV    C+ C+  A  E+  +C    +  ++Y  C++RYS   F
Sbjct: 88  CTGDVNITTCNNCVKNATIEIVKNCTNHREAIIYYIDCMVRYSDKFF 134



 Score = 30.4 bits (67), Expect = 2.3
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = +1

Query: 313 LAQCRGDVPRQDCSLCLAAAAKEVASSCRGSSDGRVFYDYCLLRY 447
           L QC   +  ++C++CL  A +E+   C       +F   C + Y
Sbjct: 201 LVQCSPHLNPENCTICLEYALQEIIDCCSDKFWAMIFTPNCFVNY 245


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,790,934
Number of Sequences: 219361
Number of extensions: 306119
Number of successful extensions: 825
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 814
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 825
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 3026354448
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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