ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart51b05 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 107 bits (54), Expect = 3e-20 Identities = 140/168 (83%), Gaps = 3/168 (1%) Strand = Plus / Minus Query: 269 cgccccgcgccgacgacgtggtcctcgccacgcagcccaagtgcggcaccacctggctca 328 |||| ||| ||||||||||| |||||||||| | || |||||||||||||||||||||| Sbjct: 25560380 cgccgcgccccgacgacgtgctcctcgccacctacccaaagtgcggcaccacctggctca 25560321 Query: 329 aggccctcgccttcaccgtcgccacccggtcccgcca---cggcctcggcgccgccgacc 385 |||| ||| ||||| | |||||| ||| |||||||| || | |||||||| ||||| Sbjct: 25560320 aggcgctctccttcgacatcgccaaccgctcccgccaccccgtcgccggcgccggcgacc 25560261 Query: 386 acccgctcctcacccgccacccgcagcacctggtgcccttcatcgaga 433 ||||||| ||||| |||||||||| |||| ||||| |||||||||| Sbjct: 25560260 acccgctgctcacgacccacccgcaggacctcgtgccgttcatcgaga 25560213 Score = 77.8 bits (39), Expect = 3e-11 Identities = 69/79 (87%) Strand = Plus / Minus Query: 274 cgcgccgacgacgtggtcctcgccacgcagcccaagtgcggcaccacctggctcaaggcc 333 |||| |||||||||| |||||||||| | || |||||||||||||||||||||||||| Sbjct: 25558007 cgcgacgacgacgtgctcctcgccacctacccaaagtgcggcaccacctggctcaaggcg 25557948 Query: 334 ctcgccttcaccgtcgcca 352 ||| ||||| || |||||| Sbjct: 25557947 ctctccttcgccatcgcca 25557929 Score = 61.9 bits (31), Expect = 2e-06 Identities = 64/75 (85%) Strand = Plus / Minus Query: 278 ccgacgacgtggtcctcgccacgcagcccaagtgcggcaccacctggctcaaggccctcg 337 ||||||| ||| |||||||||| | || ||||||||||||||||||||||||| ||| Sbjct: 25528319 ccgacgatgtgctcctcgccacctacccaaagtgcggcaccacctggctcaaggtgctct 25528260 Query: 338 ccttcaccgtcgcca 352 ||||| || |||||| Sbjct: 25528259 ccttcgccatcgcca 25528245 Score = 50.1 bits (25), Expect = 0.006 Identities = 49/57 (85%) Strand = Plus / Minus Query: 282 cgacgtggtcctcgccacgcagcccaagtgcggcaccacctggctcaaggccctcgc 338 |||||| || ||||| |||| ||||||| ||| ||||| ||||||||||||||||| Sbjct: 10720133 cgacgtcgtgctcgcgacgctgcccaaggccgggaccacgtggctcaaggccctcgc 10720077 Score = 46.1 bits (23), Expect = 0.095 Identities = 23/23 (100%) Strand = Plus / Minus Query: 390 gctcctcacccgccacccgcagc 412 ||||||||||||||||||||||| Sbjct: 1618341 gctcctcacccgccacccgcagc 1618319 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 390 gctcctcacccgccacccgca 410 ||||||||||||||||||||| Sbjct: 1618394 gctcctcacccgccacccgca 1618374
>dbj|AP004761.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0686C03 Length = 164529 Score = 107 bits (54), Expect = 3e-20 Identities = 140/168 (83%), Gaps = 3/168 (1%) Strand = Plus / Minus Query: 269 cgccccgcgccgacgacgtggtcctcgccacgcagcccaagtgcggcaccacctggctca 328 |||| ||| ||||||||||| |||||||||| | || |||||||||||||||||||||| Sbjct: 47071 cgccgcgccccgacgacgtgctcctcgccacctacccaaagtgcggcaccacctggctca 47012 Query: 329 aggccctcgccttcaccgtcgccacccggtcccgcca---cggcctcggcgccgccgacc 385 |||| ||| ||||| | |||||| ||| |||||||| || | |||||||| ||||| Sbjct: 47011 aggcgctctccttcgacatcgccaaccgctcccgccaccccgtcgccggcgccggcgacc 46952 Query: 386 acccgctcctcacccgccacccgcagcacctggtgcccttcatcgaga 433 ||||||| ||||| |||||||||| |||| ||||| |||||||||| Sbjct: 46951 acccgctgctcacgacccacccgcaggacctcgtgccgttcatcgaga 46904 Score = 77.8 bits (39), Expect = 3e-11 Identities = 69/79 (87%) Strand = Plus / Minus Query: 274 cgcgccgacgacgtggtcctcgccacgcagcccaagtgcggcaccacctggctcaaggcc 333 |||| |||||||||| |||||||||| | || |||||||||||||||||||||||||| Sbjct: 44698 cgcgacgacgacgtgctcctcgccacctacccaaagtgcggcaccacctggctcaaggcg 44639 Query: 334 ctcgccttcaccgtcgcca 352 ||| ||||| || |||||| Sbjct: 44638 ctctccttcgccatcgcca 44620 Score = 61.9 bits (31), Expect = 2e-06 Identities = 64/75 (85%) Strand = Plus / Minus Query: 278 ccgacgacgtggtcctcgccacgcagcccaagtgcggcaccacctggctcaaggccctcg 337 ||||||| ||| |||||||||| | || ||||||||||||||||||||||||| ||| Sbjct: 15010 ccgacgatgtgctcctcgccacctacccaaagtgcggcaccacctggctcaaggtgctct 14951 Query: 338 ccttcaccgtcgcca 352 ||||| || |||||| Sbjct: 14950 ccttcgccatcgcca 14936
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 85.7 bits (43), Expect = 1e-13 Identities = 70/79 (88%) Strand = Plus / Plus Query: 264 cttcacgccccgcgccgacgacgtggtcctcgccacgcagcccaagtgcggcaccacctg 323 ||||||||| |||||||||||||||||||| |||| | ||||||||||||||||| || Sbjct: 24791803 cttcacgccgcgcgccgacgacgtggtccttgccagctaccccaagtgcggcaccacgtg 24791862 Query: 324 gctcaaggccctcgccttc 342 ||||||||| || |||||| Sbjct: 24791863 gctcaaggcgctggccttc 24791881 Score = 71.9 bits (36), Expect = 2e-09 Identities = 39/40 (97%) Strand = Plus / Minus Query: 303 gcccaagtgcggcaccacctggctcaaggccctcgccttc 342 |||||||||||||||||| ||||||||||||||||||||| Sbjct: 2406826 gcccaagtgcggcaccacgtggctcaaggccctcgccttc 2406787 Score = 69.9 bits (35), Expect = 7e-09 Identities = 38/39 (97%) Strand = Plus / Minus Query: 304 cccaagtgcggcaccacctggctcaaggccctcgccttc 342 ||||||||||||||||| ||||||||||||||||||||| Sbjct: 2542868 cccaagtgcggcaccacgtggctcaaggccctcgccttc 2542830 Score = 63.9 bits (32), Expect = 4e-07 Identities = 38/40 (95%) Strand = Plus / Minus Query: 303 gcccaagtgcggcaccacctggctcaaggccctcgccttc 342 |||||||||||||||||| |||||||||||||| |||||| Sbjct: 24853003 gcccaagtgcggcaccacgtggctcaaggccctggccttc 24852964 Score = 61.9 bits (31), Expect = 2e-06 Identities = 34/35 (97%) Strand = Plus / Minus Query: 304 cccaagtgcggcaccacctggctcaaggccctcgc 338 ||||||||||||||||| ||||||||||||||||| Sbjct: 2550931 cccaagtgcggcaccacgtggctcaaggccctcgc 2550897
>dbj|AP005193.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0493C06 Length = 158923 Score = 85.7 bits (43), Expect = 1e-13 Identities = 70/79 (88%) Strand = Plus / Plus Query: 264 cttcacgccccgcgccgacgacgtggtcctcgccacgcagcccaagtgcggcaccacctg 323 ||||||||| |||||||||||||||||||| |||| | ||||||||||||||||| || Sbjct: 26254 cttcacgccgcgcgccgacgacgtggtccttgccagctaccccaagtgcggcaccacgtg 26313 Query: 324 gctcaaggccctcgccttc 342 ||||||||| || |||||| Sbjct: 26314 gctcaaggcgctggccttc 26332 Score = 63.9 bits (32), Expect = 4e-07 Identities = 38/40 (95%) Strand = Plus / Minus Query: 303 gcccaagtgcggcaccacctggctcaaggccctcgccttc 342 |||||||||||||||||| |||||||||||||| |||||| Sbjct: 87454 gcccaagtgcggcaccacgtggctcaaggccctggccttc 87415
>dbj|AK105239.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-113-B04, full insert sequence Length = 1369 Score = 85.7 bits (43), Expect = 1e-13 Identities = 70/79 (88%) Strand = Plus / Plus Query: 264 cttcacgccccgcgccgacgacgtggtcctcgccacgcagcccaagtgcggcaccacctg 323 ||||||||| |||||||||||||||||||| |||| | ||||||||||||||||| || Sbjct: 276 cttcacgccgcgcgccgacgacgtggtccttgccagctaccccaagtgcggcaccacgtg 335 Query: 324 gctcaaggccctcgccttc 342 ||||||||| || |||||| Sbjct: 336 gctcaaggcgctggccttc 354
>ref|NM_188988.1| Oryza sativa (japonica cultivar-group), mRNA Length = 999 Score = 77.8 bits (39), Expect = 3e-11 Identities = 69/79 (87%) Strand = Plus / Plus Query: 274 cgcgccgacgacgtggtcctcgccacgcagcccaagtgcggcaccacctggctcaaggcc 333 |||| |||||||||| |||||||||| | || |||||||||||||||||||||||||| Sbjct: 193 cgcgacgacgacgtgctcctcgccacctacccaaagtgcggcaccacctggctcaaggcg 252 Query: 334 ctcgccttcaccgtcgcca 352 ||| ||||| || |||||| Sbjct: 253 ctctccttcgccatcgcca 271
>gb|AC145366.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0014O08 map near S2137, complete sequence Length = 134033 Score = 73.8 bits (37), Expect = 4e-10 Identities = 55/61 (90%) Strand = Plus / Minus Query: 282 cgacgtggtcctcgccacgcagcccaagtgcggcaccacctggctcaaggccctcgcctt 341 ||||||||||||||| | | |||||||||||||||||| |||||||||||||| ||||| Sbjct: 34455 cgacgtggtcctcgcgagcctgcccaagtgcggcaccacgtggctcaaggccctggcctt 34396 Query: 342 c 342 | Sbjct: 34395 c 34395
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 73.8 bits (37), Expect = 4e-10 Identities = 55/61 (90%) Strand = Plus / Minus Query: 282 cgacgtggtcctcgccacgcagcccaagtgcggcaccacctggctcaaggccctcgcctt 341 ||||||||||||||| | | |||||||||||||||||| |||||||||||||| ||||| Sbjct: 8623289 cgacgtggtcctcgcgagcctgcccaagtgcggcaccacgtggctcaaggccctggcctt 8623230 Query: 342 c 342 | Sbjct: 8623229 c 8623229 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Plus Query: 304 cccaagtgcggcaccacctggctcaaggccctcgccttc 342 ||||||| ||||||||||||||||||||| ||||||||| Sbjct: 17387019 cccaagtccggcaccacctggctcaaggcgctcgccttc 17387057 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Plus Query: 304 cccaagtgcggcaccacctggctcaaggccctcgccttc 342 ||||||| ||||||||||||||||||||| ||||||||| Sbjct: 17345404 cccaagtccggcaccacctggctcaaggcgctcgccttc 17345442 Score = 54.0 bits (27), Expect = 4e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 304 cccaagtgcggcaccacctggctcaaggccctcgccttc 342 ||||||| ||||||||||||||||||||| || |||||| Sbjct: 17354657 cccaagtccggcaccacctggctcaaggcgcttgccttc 17354695 Score = 46.1 bits (23), Expect = 0.095 Identities = 32/35 (91%) Strand = Plus / Minus Query: 307 aagtgcggcaccacctggctcaaggccctcgcctt 341 ||||| || |||||||||||||| ||||||||||| Sbjct: 14537135 aagtgtggtaccacctggctcaaagccctcgcctt 14537101 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 304 cccaagtgcggcaccacctggctcaaggc 332 ||||||| ||||||||| ||||||||||| Sbjct: 1892869 cccaagtccggcaccacatggctcaaggc 1892841
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 73.8 bits (37), Expect = 4e-10 Identities = 55/61 (90%) Strand = Plus / Minus Query: 282 cgacgtggtcctcgccacgcagcccaagtgcggcaccacctggctcaaggccctcgcctt 341 ||||||||||||||| | | |||||||||||||||||| |||||||||||||| ||||| Sbjct: 8694052 cgacgtggtcctcgcgagcctgcccaagtgcggcaccacgtggctcaaggccctggcctt 8693993 Query: 342 c 342 | Sbjct: 8693992 c 8693992 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Plus Query: 304 cccaagtgcggcaccacctggctcaaggccctcgccttc 342 ||||||| ||||||||||||||||||||| ||||||||| Sbjct: 17480729 cccaagtccggcaccacctggctcaaggcgctcgccttc 17480767 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Plus Query: 304 cccaagtgcggcaccacctggctcaaggccctcgccttc 342 ||||||| ||||||||||||||||||||| ||||||||| Sbjct: 17439263 cccaagtccggcaccacctggctcaaggcgctcgccttc 17439301 Score = 54.0 bits (27), Expect = 4e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 304 cccaagtgcggcaccacctggctcaaggccctcgccttc 342 ||||||| ||||||||||||||||||||| || |||||| Sbjct: 17448516 cccaagtccggcaccacctggctcaaggcgcttgccttc 17448554 Score = 46.1 bits (23), Expect = 0.095 Identities = 32/35 (91%) Strand = Plus / Minus Query: 307 aagtgcggcaccacctggctcaaggccctcgcctt 341 ||||| || |||||||||||||| ||||||||||| Sbjct: 14619136 aagtgtggtaccacctggctcaaagccctcgcctt 14619102 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 304 cccaagtgcggcaccacctggctcaaggc 332 ||||||| ||||||||| ||||||||||| Sbjct: 1890590 cccaagtccggcaccacatggctcaaggc 1890562
>ref|NM_186313.1| Oryza sativa (japonica cultivar-group), mRNA Length = 501 Score = 71.9 bits (36), Expect = 2e-09 Identities = 39/40 (97%) Strand = Plus / Minus Query: 303 gcccaagtgcggcaccacctggctcaaggccctcgccttc 342 |||||||||||||||||| ||||||||||||||||||||| Sbjct: 210 gcccaagtgcggcaccacgtggctcaaggccctcgccttc 171
>dbj|AP005473.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0077B15 Length = 139345 Score = 71.9 bits (36), Expect = 2e-09 Identities = 39/40 (97%) Strand = Plus / Minus Query: 303 gcccaagtgcggcaccacctggctcaaggccctcgccttc 342 |||||||||||||||||| ||||||||||||||||||||| Sbjct: 109834 gcccaagtgcggcaccacgtggctcaaggccctcgccttc 109795
>dbj|AP004263.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0022E03 Length = 163032 Score = 69.9 bits (35), Expect = 7e-09 Identities = 38/39 (97%) Strand = Plus / Minus Query: 304 cccaagtgcggcaccacctggctcaaggccctcgccttc 342 ||||||||||||||||| ||||||||||||||||||||| Sbjct: 107848 cccaagtgcggcaccacgtggctcaaggccctcgccttc 107810 Score = 61.9 bits (31), Expect = 2e-06 Identities = 34/35 (97%) Strand = Plus / Minus Query: 304 cccaagtgcggcaccacctggctcaaggccctcgc 338 ||||||||||||||||| ||||||||||||||||| Sbjct: 115911 cccaagtgcggcaccacgtggctcaaggccctcgc 115877
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 67.9 bits (34), Expect = 3e-08 Identities = 40/42 (95%) Strand = Plus / Minus Query: 307 aagtgcggcaccacctggctcaaggccctcgccttcaccgtc 348 |||||||||||||||||||||||||| ||||||||| ||||| Sbjct: 9822679 aagtgcggcaccacctggctcaaggcgctcgccttcgccgtc 9822638 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 304 cccaagtgcggcaccacctggctcaaggc 332 ||||||| ||||||||| ||||||||||| Sbjct: 1822161 cccaagtccggcaccacatggctcaaggc 1822133 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 366 cggcctcggcgccgccgacc 385 |||||||||||||||||||| Sbjct: 2835668 cggcctcggcgccgccgacc 2835649 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 307 aagtgcggcaccacctggctcaag 330 |||| ||||||||||||||||||| Sbjct: 1842479 aagtccggcaccacctggctcaag 1842456
>dbj|AK070224.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023042G18, full insert sequence Length = 1207 Score = 67.9 bits (34), Expect = 3e-08 Identities = 40/42 (95%) Strand = Plus / Plus Query: 307 aagtgcggcaccacctggctcaaggccctcgccttcaccgtc 348 |||||||||||||||||||||||||| ||||||||| ||||| Sbjct: 270 aagtgcggcaccacctggctcaaggcgctcgccttcgccgtc 311
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 67.9 bits (34), Expect = 3e-08 Identities = 40/42 (95%) Strand = Plus / Minus Query: 307 aagtgcggcaccacctggctcaaggccctcgccttcaccgtc 348 |||||||||||||||||||||||||| ||||||||| ||||| Sbjct: 9822564 aagtgcggcaccacctggctcaaggcgctcgccttcgccgtc 9822523 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 304 cccaagtgcggcaccacctggctcaaggc 332 ||||||| ||||||||| ||||||||||| Sbjct: 1822139 cccaagtccggcaccacatggctcaaggc 1822111 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 366 cggcctcggcgccgccgacc 385 |||||||||||||||||||| Sbjct: 2835612 cggcctcggcgccgccgacc 2835593 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 307 aagtgcggcaccacctggctcaag 330 |||| ||||||||||||||||||| Sbjct: 1842457 aagtccggcaccacctggctcaag 1842434
>emb|AL954870.3|CNS08CD9 Oryza sativa chromosome 12, . BAC OSJNBb0112E17 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 140806 Score = 67.9 bits (34), Expect = 3e-08 Identities = 40/42 (95%) Strand = Plus / Plus Query: 307 aagtgcggcaccacctggctcaaggccctcgccttcaccgtc 348 |||||||||||||||||||||||||| ||||||||| ||||| Sbjct: 109791 aagtgcggcaccacctggctcaaggcgctcgccttcgccgtc 109832
>dbj|AP006458.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0072I06 Length = 162411 Score = 63.9 bits (32), Expect = 4e-07 Identities = 38/40 (95%) Strand = Plus / Minus Query: 303 gcccaagtgcggcaccacctggctcaaggccctcgccttc 342 |||||||||||||||||| |||||||||||||| |||||| Sbjct: 36635 gcccaagtgcggcaccacgtggctcaaggccctggccttc 36596
>ref|NM_195276.1| Oryza sativa (japonica cultivar-group) putative flavonol 3-sulfotransferase (OSJNBb0038H12.7), mRNA Length = 1005 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Plus Query: 304 cccaagtgcggcaccacctggctcaaggccctcgccttc 342 ||||||||||||||||| |||||||||||||| |||||| Sbjct: 205 cccaagtgcggcaccacgtggctcaaggccctggccttc 243
>ref|XM_476630.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1644 Score = 61.9 bits (31), Expect = 2e-06 Identities = 34/35 (97%) Strand = Plus / Plus Query: 304 cccaagtgcggcaccacctggctcaaggccctcgc 338 ||||||||||||||||| ||||||||||||||||| Sbjct: 295 cccaagtgcggcaccacgtggctcaaggccctcgc 329
>gb|AC105932.6| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBb0038H12 map E60284SA, complete sequence Length = 139190 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Plus Query: 304 cccaagtgcggcaccacctggctcaaggccctcgccttc 342 ||||||||||||||||| |||||||||||||| |||||| Sbjct: 19417 cccaagtgcggcaccacgtggctcaaggccctggccttc 19455
>gb|AC136009.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0025K21, complete sequence Length = 146539 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Plus Query: 304 cccaagtgcggcaccacctggctcaaggccctcgccttc 342 ||||||| ||||||||||||||||||||| ||||||||| Sbjct: 115801 cccaagtccggcaccacctggctcaaggcgctcgccttc 115839 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Plus Query: 304 cccaagtgcggcaccacctggctcaaggccctcgccttc 342 ||||||| ||||||||||||||||||||| ||||||||| Sbjct: 74335 cccaagtccggcaccacctggctcaaggcgctcgccttc 74373 Score = 54.0 bits (27), Expect = 4e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 304 cccaagtgcggcaccacctggctcaaggccctcgccttc 342 ||||||| ||||||||||||||||||||| || |||||| Sbjct: 83588 cccaagtccggcaccacctggctcaaggcgcttgccttc 83626
>gb|AC150202.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone B1024A10, complete sequence Length = 157609 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Plus Query: 304 cccaagtgcggcaccacctggctcaaggccctcgccttc 342 ||||||| ||||||||||||||||||||| ||||||||| Sbjct: 141794 cccaagtccggcaccacctggctcaaggcgctcgccttc 141832 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Plus Query: 304 cccaagtgcggcaccacctggctcaaggccctcgccttc 342 ||||||| ||||||||||||||||||||| ||||||||| Sbjct: 100328 cccaagtccggcaccacctggctcaaggcgctcgccttc 100366 Score = 54.0 bits (27), Expect = 4e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 304 cccaagtgcggcaccacctggctcaaggccctcgccttc 342 ||||||| ||||||||||||||||||||| || |||||| Sbjct: 109581 cccaagtccggcaccacctggctcaaggcgcttgccttc 109619
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Minus Query: 304 cccaagtgcggcaccacctggctcaaggccctcgccttc 342 ||||||||||||||||| |||||||||||||| |||||| Sbjct: 5904466 cccaagtgcggcaccacgtggctcaaggccctggccttc 5904428
>dbj|AP004765.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0711H09 Length = 185858 Score = 61.9 bits (31), Expect = 2e-06 Identities = 64/75 (85%) Strand = Plus / Minus Query: 278 ccgacgacgtggtcctcgccacgcagcccaagtgcggcaccacctggctcaaggccctcg 337 ||||||| ||| |||||||||| | || ||||||||||||||||||||||||| ||| Sbjct: 159635 ccgacgatgtgctcctcgccacctacccaaagtgcggcaccacctggctcaaggtgctct 159576 Query: 338 ccttcaccgtcgcca 352 ||||| || |||||| Sbjct: 159575 ccttcgccatcgcca 159561
>dbj|AK066828.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013075L15, full insert sequence Length = 1243 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Plus Query: 304 cccaagtgcggcaccacctggctcaaggccctcgccttc 342 ||||||||||||||||| |||||||||||||| |||||| Sbjct: 313 cccaagtgcggcaccacgtggctcaaggccctggccttc 351
>dbj|AK061183.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-209-D11, full insert sequence Length = 1225 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Plus Query: 304 cccaagtgcggcaccacctggctcaaggccctcgccttc 342 ||||||| ||||||||||||||||||||| ||||||||| Sbjct: 270 cccaagtccggcaccacctggctcaaggcgctcgccttc 308
>dbj|AK061003.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-H02, full insert sequence Length = 1222 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Plus Query: 304 cccaagtgcggcaccacctggctcaaggccctcgccttc 342 ||||||| ||||||||||||||||||||| ||||||||| Sbjct: 245 cccaagtccggcaccacctggctcaaggcgctcgccttc 283
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Minus Query: 304 cccaagtgcggcaccacctggctcaaggccctcgccttc 342 ||||||||||||||||| |||||||||||||| |||||| Sbjct: 5905652 cccaagtgcggcaccacgtggctcaaggccctggccttc 5905614
>gb|AC137593.2| Oryza sativa (Japonica cultiva-group) chromosome 9 BAC clone OSJNBa0043I04, complete sequence Length = 145191 Score = 54.0 bits (27), Expect = 4e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 304 cccaagtgcggcaccacctggctcaaggccctcgccttc 342 ||||||| |||||||| |||||||||||| ||||||||| Sbjct: 58722 cccaagtccggcaccagctggctcaaggcgctcgccttc 58760
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 54.0 bits (27), Expect = 4e-04 Identities = 36/39 (92%) Strand = Plus / Plus Query: 304 cccaagtgcggcaccacctggctcaaggccctcgccttc 342 ||||||| |||||||| |||||||||||| ||||||||| Sbjct: 21712702 cccaagtccggcaccagctggctcaaggcgctcgccttc 21712740 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 390 gctcctcacccgccacccgc 409 |||||||||||||||||||| Sbjct: 12825893 gctcctcacccgccacccgc 12825912 Score = 40.1 bits (20), Expect = 5.9 Identities = 35/40 (87%) Strand = Plus / Plus Query: 383 accacccgctcctcacccgccacccgcagcacctggtgcc 422 ||||||| |||||||||| ||||||||||||| ||||| Sbjct: 4196883 accaccctctcctcacccaaaacccgcagcaccttgtgcc 4196922
>ref|XM_481221.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1065 Score = 50.1 bits (25), Expect = 0.006 Identities = 49/57 (85%) Strand = Plus / Plus Query: 282 cgacgtggtcctcgccacgcagcccaagtgcggcaccacctggctcaaggccctcgc 338 |||||| || ||||| |||| ||||||| ||| ||||| ||||||||||||||||| Sbjct: 270 cgacgtcgtgctcgcgacgctgcccaaggccgggaccacgtggctcaaggccctcgc 326
>ref|NM_183698.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1041 Score = 50.1 bits (25), Expect = 0.006 Identities = 28/29 (96%) Strand = Plus / Plus Query: 304 cccaagtgcggcaccacctggctcaaggc 332 |||||||| |||||||||||||||||||| Sbjct: 238 cccaagtgtggcaccacctggctcaaggc 266
>emb|AJ698082.1| Oryza sativa (japonica cultivar-group) mRNA for steroid sulfotransferase (ss1 gene) Length = 1096 Score = 50.1 bits (25), Expect = 0.006 Identities = 28/29 (96%) Strand = Plus / Plus Query: 304 cccaagtgcggcaccacctggctcaaggc 332 |||||||| |||||||||||||||||||| Sbjct: 251 cccaagtgtggcaccacctggctcaaggc 279
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 50.1 bits (25), Expect = 0.006 Identities = 28/29 (96%) Strand = Plus / Minus Query: 304 cccaagtgcggcaccacctggctcaaggc 332 |||||||| |||||||||||||||||||| Sbjct: 11687223 cccaagtgtggcaccacctggctcaaggc 11687195
>dbj|AP003934.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0551A11 Length = 132384 Score = 50.1 bits (25), Expect = 0.006 Identities = 28/29 (96%) Strand = Plus / Minus Query: 304 cccaagtgcggcaccacctggctcaaggc 332 |||||||| |||||||||||||||||||| Sbjct: 126347 cccaagtgtggcaccacctggctcaaggc 126319
>dbj|AP003722.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1011A07 Length = 150590 Score = 50.1 bits (25), Expect = 0.006 Identities = 28/29 (96%) Strand = Plus / Minus Query: 304 cccaagtgcggcaccacctggctcaaggc 332 |||||||| |||||||||||||||||||| Sbjct: 26391 cccaagtgtggcaccacctggctcaaggc 26363
>dbj|AP005415.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0091M20 Length = 132976 Score = 50.1 bits (25), Expect = 0.006 Identities = 49/57 (85%) Strand = Plus / Minus Query: 282 cgacgtggtcctcgccacgcagcccaagtgcggcaccacctggctcaaggccctcgc 338 |||||| || ||||| |||| ||||||| ||| ||||| ||||||||||||||||| Sbjct: 17265 cgacgtcgtgctcgcgacgctgcccaaggccgggaccacgtggctcaaggccctcgc 17209
>dbj|AK105552.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-128-A12, full insert sequence Length = 1407 Score = 50.1 bits (25), Expect = 0.006 Identities = 28/29 (96%) Strand = Plus / Plus Query: 304 cccaagtgcggcaccacctggctcaaggc 332 |||||||| |||||||||||||||||||| Sbjct: 310 cccaagtgtggcaccacctggctcaaggc 338
>gb|AY106554.1| Zea mays PCO133039 mRNA sequence Length = 474 Score = 50.1 bits (25), Expect = 0.006 Identities = 49/57 (85%) Strand = Plus / Plus Query: 264 cttcacgccccgcgccgacgacgtggtcctcgccacgcagcccaagtgcggcaccac 320 ||||||||| ||| ||||||||||| ||||||| | | ||||||||||||||||| Sbjct: 270 cttcacgccgcgccccgacgacgtgatcctcgcgagctaccccaagtgcggcaccac 326
>gb|AC146526.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0027D12 map near 50283S, complete sequence Length = 128988 Score = 46.1 bits (23), Expect = 0.095 Identities = 32/35 (91%) Strand = Plus / Minus Query: 307 aagtgcggcaccacctggctcaaggccctcgcctt 341 ||||| || |||||||||||||| ||||||||||| Sbjct: 36548 aagtgtggtaccacctggctcaaagccctcgcctt 36514
>dbj|AP003886.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1163_G08 Length = 150676 Score = 46.1 bits (23), Expect = 0.095 Identities = 23/23 (100%) Strand = Plus / Minus Query: 390 gctcctcacccgccacccgcagc 412 ||||||||||||||||||||||| Sbjct: 145829 gctcctcacccgccacccgcagc 145807 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 390 gctcctcacccgccacccgca 410 ||||||||||||||||||||| Sbjct: 145882 gctcctcacccgccacccgca 145862
>dbj|AP004591.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0582D05 Length = 150483 Score = 46.1 bits (23), Expect = 0.095 Identities = 23/23 (100%) Strand = Plus / Minus Query: 390 gctcctcacccgccacccgcagc 412 ||||||||||||||||||||||| Sbjct: 17841 gctcctcacccgccacccgcagc 17819 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 390 gctcctcacccgccacccgca 410 ||||||||||||||||||||| Sbjct: 17894 gctcctcacccgccacccgca 17874
>dbj|AK059900.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-208-G02, full insert sequence Length = 1103 Score = 46.1 bits (23), Expect = 0.095 Identities = 32/35 (91%) Strand = Plus / Plus Query: 307 aagtgcggcaccacctggctcaaggccctcgcctt 341 ||||| || |||||||||||||| ||||||||||| Sbjct: 179 aagtgtggtaccacctggctcaaagccctcgcctt 213
>ref|XM_880817.1| PREDICTED: Bos taurus similar to B cell RAG associated protein, transcript variant 2 (LOC534506), mRNA Length = 3955 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 300 gcagcccaagtgcggcaccacc 321 |||||||||||||||||||||| Sbjct: 760 gcagcccaagtgcggcaccacc 781
>ref|XM_614294.2| PREDICTED: Bos taurus similar to B cell RAG associated protein, transcript variant 1 (LOC534506), mRNA Length = 3891 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 300 gcagcccaagtgcggcaccacc 321 |||||||||||||||||||||| Sbjct: 780 gcagcccaagtgcggcaccacc 801
>ref|XM_544058.2| PREDICTED: Canis familiaris similar to B cell RAG associated protein (LOC486928), mRNA Length = 2259 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 300 gcagcccaagtgcggcaccacc 321 |||||||||||||||||||||| Sbjct: 1353 gcagcccaagtgcggcaccacc 1374
>gb|AY899214.1| Streptomyces aizunensis strain NRRL B-11277 glycosyltransferase, polyketide synthase type Is, acyl transferase, membrane protein, ABC transporter, sugar dehydratase/epimerase, sugar epimerase, sugar nucleotidyltransferase, sugar dehydratase/epimerase, thioesterase, acyl CoA ligase, amine oxidase, phosphopantetheinyl transferase, transcriptional regulator, carboxylase/carboxyltransferase, amidinohydrolase, amide synthetase, 5-aminolevulinate synthase, and acyl CoA ligase genes, complete cds; and unknown gene Length = 161719 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 371 tcggcgccgccgaccacccgct 392 |||||||||||||||||||||| Sbjct: 106655 tcggcgccgccgaccacccgct 106676
>ref|XM_475550.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2316 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 335 tcgccttcaccgtcgccaccc 355 ||||||||||||||||||||| Sbjct: 278 tcgccttcaccgtcgccaccc 298
>gb|AC151480.1| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNAa0068G15, complete sequence Length = 130161 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 304 cccaagtgcggcaccacctggctcaaggc 332 ||||||| ||||||||| ||||||||||| Sbjct: 24525 cccaagtccggcaccacatggctcaaggc 24497
>gb|AC134931.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0079L11, complete sequence Length = 124104 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 335 tcgccttcaccgtcgccaccc 355 ||||||||||||||||||||| Sbjct: 56269 tcgccttcaccgtcgccaccc 56289
>gb|AC123527.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0068G15, complete sequence Length = 146175 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 304 cccaagtgcggcaccacctggctcaaggc 332 ||||||| ||||||||| ||||||||||| Sbjct: 110699 cccaagtccggcaccacatggctcaaggc 110671
>gb|AF348051.1| Paracaleana nigrita 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and 26S ribosomal RNA gene, partial sequence Length = 701 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 371 tcggcgccgccgaccacccgctcctcacc 399 ||||||||||| |||||||||||| |||| Sbjct: 74 tcggcgccgcccaccacccgctccgcacc 102
>gb|CP000316.1| Polaromonas sp. JS666, complete genome Length = 5200264 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 63 ccgctcccctcccgcgccagc 83 ||||||||||||||||||||| Sbjct: 1566651 ccgctcccctcccgcgccagc 1566631
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 304 cccaagtgcggcaccacctggctca 328 ||||||||||||||||| ||||||| Sbjct: 7945102 cccaagtgcggcaccacgtggctca 7945126 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 66 ctcccctcccgcgccagccatggc 89 ||||||| |||||||||||||||| Sbjct: 1820942 ctccccttccgcgccagccatggc 1820919
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 335 tcgccttcaccgtcgccaccc 355 ||||||||||||||||||||| Sbjct: 1394607 tcgccttcaccgtcgccaccc 1394627
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 1.5 Identities = 45/53 (84%) Strand = Plus / Minus Query: 290 tcctcgccacgcagcccaagtgcggcaccacctggctcaaggccctcgccttc 342 |||||||||| |||||||| |||| | || ||||||||||| ||||||||| Sbjct: 27987084 tcctcgccaccatgcccaagtccggctcgacgtggctcaaggcgctcgccttc 27987032
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 71 ctcccgcgccagccatggcca 91 ||||||||||||||||||||| Sbjct: 6712075 ctcccgcgccagccatggcca 6712095
>dbj|AP004255.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1212_A08 Length = 119304 Score = 42.1 bits (21), Expect = 1.5 Identities = 45/53 (84%) Strand = Plus / Minus Query: 290 tcctcgccacgcagcccaagtgcggcaccacctggctcaaggccctcgccttc 342 |||||||||| |||||||| |||| | || ||||||||||| ||||||||| Sbjct: 30746 tcctcgccaccatgcccaagtccggctcgacgtggctcaaggcgctcgccttc 30694
>dbj|AP005518.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0046H10 Length = 155544 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 304 cccaagtgcggcaccacctggctca 328 ||||||||||||||||| ||||||| Sbjct: 52620 cccaagtgcggcaccacgtggctca 52644
>dbj|AP004178.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1123_G04 Length = 124666 Score = 42.1 bits (21), Expect = 1.5 Identities = 45/53 (84%) Strand = Plus / Minus Query: 290 tcctcgccacgcagcccaagtgcggcaccacctggctcaaggccctcgccttc 342 |||||||||| |||||||| |||| | || ||||||||||| ||||||||| Sbjct: 114536 tcctcgccaccatgcccaagtccggctcgacgtggctcaaggcgctcgccttc 114484
>dbj|AK120637.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013153K02, full insert sequence Length = 2511 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 335 tcgccttcaccgtcgccaccc 355 ||||||||||||||||||||| Sbjct: 288 tcgccttcaccgtcgccaccc 308
>dbj|AK070507.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023054C04, full insert sequence Length = 1260 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 304 cccaagtgcggcaccacctggctca 328 ||||||||||||||||| ||||||| Sbjct: 303 cccaagtgcggcaccacgtggctca 327
>emb|AL935154.2|CNS08CCP Oryza sativa chromosome 12, . BAC OSJNBb0109O08 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 128619 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 304 cccaagtgcggcaccacctggctcaaggc 332 ||||||| ||||||||| ||||||||||| Sbjct: 16879 cccaagtccggcaccacatggctcaaggc 16851 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 307 aagtgcggcaccacctggctcaag 330 |||| ||||||||||||||||||| Sbjct: 37197 aagtccggcaccacctggctcaag 37174
>emb|BX000502.2|CNS08CDS Oryza sativa chromosome 12, . BAC OSJNBb0041E01 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 132026 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 304 cccaagtgcggcaccacctggctcaaggc 332 ||||||| ||||||||| ||||||||||| Sbjct: 18321 cccaagtccggcaccacatggctcaaggc 18349
>ref|XM_550614.1| Oryza sativa (japonica cultivar-group), mRNA Length = 680 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 66 ctcccctcccgcgccagccatggc 89 ||||||| |||||||||||||||| Sbjct: 72 ctccccttccgcgccagccatggc 95
>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome Length = 3997420 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 360 ccgccacggcctcggcgccgccga 383 |||||||||||| ||||||||||| Sbjct: 429012 ccgccacggcctgggcgccgccga 428989
>ref|XM_450797.1| Oryza sativa (japonica cultivar-group), mRNA Length = 447 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 390 gctcctcacccgccacccgc 409 |||||||||||||||||||| Sbjct: 217 gctcctcacccgccacccgc 198
>ref|XM_450330.1| Oryza sativa (japonica cultivar-group), mRNA Length = 843 Score = 40.1 bits (20), Expect = 5.9 Identities = 35/40 (87%) Strand = Plus / Plus Query: 383 accacccgctcctcacccgccacccgcagcacctggtgcc 422 ||||||| |||||||||| ||||||||||||| ||||| Sbjct: 155 accaccctctcctcacccaaaacccgcagcaccttgtgcc 194
>ref|XM_470549.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 4449 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 363 ccacggcctcggcgccgccg 382 |||||||||||||||||||| Sbjct: 54 ccacggcctcggcgccgccg 73
>gb|BC024077.1| Mus musculus tetratricopeptide repeat domain 15, mRNA (cDNA clone MGC:37788 IMAGE:5097580), complete cds Length = 2966 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 386 acccgctcctcacccgccacccgc 409 |||||||||||||| ||||||||| Sbjct: 79 acccgctcctcacctgccacccgc 56
>ref|XM_365659.1| Magnaporthe grisea 70-15 predicted protein (MG02361.4) partial mRNA Length = 1383 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 369 cctcggcgccgccgaccacc 388 |||||||||||||||||||| Sbjct: 1210 cctcggcgccgccgaccacc 1191
>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome Length = 3696649 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 267 cacgccccgcgccgacgacg 286 |||||||||||||||||||| Sbjct: 2892582 cacgccccgcgccgacgacg 2892601
>ref|NM_178811.3| Mus musculus tetratricopeptide repeat domain 15 (Ttc15), mRNA Length = 2966 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 386 acccgctcctcacccgccacccgc 409 |||||||||||||| ||||||||| Sbjct: 79 acccgctcctcacctgccacccgc 56
>ref|NM_152363.2| Homo sapiens ankyrin repeat domain 41 (ANKRD41), mRNA Length = 2893 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 246 cctgcgagccaggcgggcct 265 |||||||||||||||||||| Sbjct: 79 cctgcgagccaggcgggcct 60
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 363 ccacggcctcggcgccgccg 382 |||||||||||||||||||| Sbjct: 4261187 ccacggcctcggcgccgccg 4261206
>gb|AC136986.6| Mus musculus chromosome 12, clone RP23-187H12, complete sequence Length = 206332 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 386 acccgctcctcacccgccacccgc 409 |||||||||||||| ||||||||| Sbjct: 136121 acccgctcctcacctgccacccgc 136144
>gb|AY233552.1| Aenictus laeviceps 28S ribosomal RNA gene, partial sequence Length = 540 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 258 gcgggccttcacgccccgcg 277 |||||||||||||||||||| Sbjct: 490 gcgggccttcacgccccgcg 471
>emb|X79146.1|SLLINC S.lincolnensis (78-11) Lincomycin production genes Length = 36270 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 362 gccacggcctcggcgccgccgacc 385 |||||||||||| ||||||||||| Sbjct: 19016 gccacggcctcgtcgccgccgacc 19039
>emb|AL939105.1|SCO939105 Streptomyces coelicolor A3(2) complete genome; segment 2/29 Length = 291000 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 276 cgccgacgacgtggtcctcgccac 299 |||||||| ||||||||||||||| Sbjct: 232294 cgccgacgtcgtggtcctcgccac 232271
>gb|AC011477.5| Homo sapiens chromosome 19 clone CTC-559E9, complete sequence Length = 178710 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 143 tccaggaggacttcatctcc 162 |||||||||||||||||||| Sbjct: 155727 tccaggaggacttcatctcc 155708
>gb|AC010463.6| Homo sapiens chromosome 19 clone CTD-2278I10, complete sequence Length = 118338 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 246 cctgcgagccaggcgggcct 265 |||||||||||||||||||| Sbjct: 92540 cctgcgagccaggcgggcct 92559
>gb|AC025566.22| Homo sapiens 3 BAC RP11-501O2 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 200398 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 139 aggctccaggaggacttcat 158 |||||||||||||||||||| Sbjct: 113540 aggctccaggaggacttcat 113521
>dbj|AK092706.1| Homo sapiens cDNA FLJ35387 fis, clone SKNMC1000123, weakly similar to CYCLIN-DEPENDENT KINASE 4 INHIBITOR A Length = 2893 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 246 cctgcgagccaggcgggcct 265 |||||||||||||||||||| Sbjct: 79 cctgcgagccaggcgggcct 60
>gb|AC026395.11| Homo sapiens chromosome 10 clone RP11-45D20, complete sequence Length = 172777 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 64 cgctcccctcccgcgccagc 83 |||||||||||||||||||| Sbjct: 150674 cgctcccctcccgcgccagc 150693
>gb|AC025947.9| Homo sapiens chromosome 10 clone RP11-78A18, complete sequence Length = 159082 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 64 cgctcccctcccgcgccagc 83 |||||||||||||||||||| Sbjct: 75870 cgctcccctcccgcgccagc 75889
>gb|AC020948.8| Homo sapiens chromosome 19 clone LLNLR-227D2, complete sequence Length = 41779 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 143 tccaggaggacttcatctcc 162 |||||||||||||||||||| Sbjct: 16560 tccaggaggacttcatctcc 16541
>dbj|AK031763.1| Mus musculus 11 days embryo head cDNA, RIKEN full-length enriched library, clone:6230412A12 product:weakly similar to CGI-87 PROTEIN [Homo sapiens], full insert sequence Length = 2815 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 386 acccgctcctcacccgccacccgc 409 |||||||||||||| ||||||||| Sbjct: 62 acccgctcctcacctgccacccgc 39
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 373 ggcgccgccgaccacccgct 392 |||||||||||||||||||| Sbjct: 336598 ggcgccgccgaccacccgct 336617
>dbj|AK086217.1| Mus musculus 15 days embryo head cDNA, RIKEN full-length enriched library, clone:D930014A20 product:hypothetical Tetratricopeptide repeat (TPR) structure containing protein, full insert sequence Length = 4265 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 386 acccgctcctcacccgccacccgc 409 |||||||||||||| ||||||||| Sbjct: 68 acccgctcctcacctgccacccgc 45
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 363 ccacggcctcggcgccgccg 382 |||||||||||||||||||| Sbjct: 4261302 ccacggcctcggcgccgccg 4261321
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 384 ccacccgctcctcacccgcc 403 |||||||||||||||||||| Sbjct: 632316 ccacccgctcctcacccgcc 632297
>gb|AF263912.1|AF263912 Streptomyces noursei ATCC 11455 nystatin biosynthetic gene cluster, complete sequence Length = 123580 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 373 ggcgccgccgaccacccgct 392 |||||||||||||||||||| Sbjct: 79097 ggcgccgccgaccacccgct 79116
>gb|AC010521.4|AC010521 Homo sapiens chromosome 19 clone LLNLR-269E4, complete sequence Length = 39156 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 143 tccaggaggacttcatctcc 162 |||||||||||||||||||| Sbjct: 753 tccaggaggacttcatctcc 772
>dbj|AP004234.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0001H02 Length = 147160 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 66 ctcccctcccgcgccagccatggc 89 ||||||| |||||||||||||||| Sbjct: 21420 ctccccttccgcgccagccatggc 21397
>dbj|AP002542.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0679C08 Length = 156266 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 66 ctcccctcccgcgccagccatggc 89 ||||||| |||||||||||||||| Sbjct: 146091 ctccccttccgcgccagccatggc 146068
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 366 cggcctcggcgccgccgacc 385 |||||||||||||||||||| Sbjct: 1479141 cggcctcggcgccgccgacc 1479160
>dbj|AP005589.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0523B07 Length = 170510 Score = 40.1 bits (20), Expect = 5.9 Identities = 35/40 (87%) Strand = Plus / Plus Query: 383 accacccgctcctcacccgccacccgcagcacctggtgcc 422 ||||||| |||||||||| ||||||||||||| ||||| Sbjct: 20642 accaccctctcctcacccaaaacccgcagcaccttgtgcc 20681
>dbj|AP005702.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0027G10 Length = 184759 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 390 gctcctcacccgccacccgc 409 |||||||||||||||||||| Sbjct: 133670 gctcctcacccgccacccgc 133689
>dbj|AK120319.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013056N13, full insert sequence Length = 680 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 66 ctcccctcccgcgccagccatggc 89 ||||||| |||||||||||||||| Sbjct: 72 ctccccttccgcgccagccatggc 95
>dbj|AK110593.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-168-F09, full insert sequence Length = 1195 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 366 cggcctcggcgccgccgacc 385 |||||||||||||||||||| Sbjct: 192 cggcctcggcgccgccgacc 211
>dbj|AK106717.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-114-G01, full insert sequence Length = 2114 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 66 ctcccctcccgcgccagccatggc 89 ||||||| |||||||||||||||| Sbjct: 508 ctccccttccgcgccagccatggc 531
>dbj|AK062184.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-E02, full insert sequence Length = 695 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 66 ctcccctcccgcgccagccatggc 89 ||||||| |||||||||||||||| Sbjct: 79 ctccccttccgcgccagccatggc 102
>dbj|D12632.1|RIC40SSRPC Oryza sativa (japonica cultivar-group) mRNA for 40S subunit ribosomal protein, complete cds Length = 661 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 66 ctcccctcccgcgccagccatggc 89 ||||||| |||||||||||||||| Sbjct: 45 ctccccttccgcgccagccatggc 68
>emb|AL928758.3|CNS08CBV Oryza sativa chromosome 12, . BAC OSJNBb0075N21 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 145539 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 366 cggcctcggcgccgccgacc 385 |||||||||||||||||||| Sbjct: 34779 cggcctcggcgccgccgacc 34798
>gb|AC126223.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0076N15, complete sequence Length = 134307 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 363 ccacggcctcggcgccgccg 382 |||||||||||||||||||| Sbjct: 89802 ccacggcctcggcgccgccg 89821
>dbj|AB052962.1| Oryza sativa EPSPs, rps20 genes for 3-phosphoshikimate 1-carboxyvinyltransferase, 40S ribosomal protein S20, complete cds Length = 10601 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 66 ctcccctcccgcgccagccatggc 89 ||||||| |||||||||||||||| Sbjct: 9041 ctccccttccgcgccagccatggc 9018 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,885,469 Number of Sequences: 3902068 Number of extensions: 2885469 Number of successful extensions: 66776 Number of sequences better than 10.0: 106 Number of HSP's better than 10.0 without gapping: 120 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 64244 Number of HSP's gapped (non-prelim): 2529 length of query: 438 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 416 effective length of database: 17,147,199,772 effective search space: 7133235105152 effective search space used: 7133235105152 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
