ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart51b02 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK070638.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023056K03, full insert sequence Length = 1834 Score = 280 bits (141), Expect = 4e-72 Identities = 207/229 (90%) Strand = Plus / Plus Query: 159 gccgtcgcccctctttcccggccgtcgcggcggcggtctcttcgatggcgtcctcggatg 218 |||| |||||| | |||||| ||||||| |||||| | | ||||||||||||||||| Sbjct: 190 gccgccgccccgccttcccgtccgtcgccgcggcgtccacatcgatggcgtcctcggaga 249 Query: 219 gcgaggagaagaaggagaccaagctgtggggcgggcgcttcgaggagggcgtcaccgacg 278 ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 250 gcgaggagaggaaggagaccaagctgtggggcgggcgattcgaggagggcgtcaccgacg 309 Query: 279 ccgtggagcgcttcacggagtcaatctcctacgactggcagctgtacaagtacgatatca 338 ||||||| | ||||| ||||| |||||||||||||||||||| ||||||||||| |||| Sbjct: 310 ccgtggaagggttcaccgagtccatctcctacgactggcagctctacaagtacgacatca 369 Query: 339 tgggcagcaaggcccacgcgtccatgctcgccgcccagggtttgataac 387 ||||||||||||||||||| |||||||||||||| |||||||||||||| Sbjct: 370 tgggcagcaaggcccacgcatccatgctcgccgcgcagggtttgataac 418 Score = 50.1 bits (25), Expect = 0.006 Identities = 34/37 (91%) Strand = Plus / Plus Query: 68 gccgccacctcccattccctcctctccccggcgccca 104 |||||||||||||| ||| ||||||| |||||||||| Sbjct: 93 gccgccacctcccaatccttcctctcgccggcgccca 129
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 260 bits (131), Expect = 3e-66 Identities = 197/219 (89%) Strand = Plus / Plus Query: 159 gccgtcgcccctctttcccggccgtcgcggcggcggtctcttcgatggcgtcctcggatg 218 |||| |||||| | |||||| ||||||| |||||| | | ||||||||||||||||| Sbjct: 10815237 gccgccgccccgccttcccgtccgtcgccgcggcgtccacatcgatggcgtcctcggaga 10815296 Query: 219 gcgaggagaagaaggagaccaagctgtggggcgggcgcttcgaggagggcgtcaccgacg 278 ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 10815297 gcgaggagaggaaggagaccaagctgtggggcgggcgattcgaggagggcgtcaccgacg 10815356 Query: 279 ccgtggagcgcttcacggagtcaatctcctacgactggcagctgtacaagtacgatatca 338 ||||||| | ||||| ||||| |||||||||||||||||||| ||||||||||| |||| Sbjct: 10815357 ccgtggaagggttcaccgagtccatctcctacgactggcagctctacaagtacgacatca 10815416 Query: 339 tgggcagcaaggcccacgcgtccatgctcgccgcccagg 377 ||||||||||||||||||| |||||||||||||| |||| Sbjct: 10815417 tgggcagcaaggcccacgcatccatgctcgccgcgcagg 10815455 Score = 50.1 bits (25), Expect = 0.006 Identities = 34/37 (91%) Strand = Plus / Plus Query: 68 gccgccacctcccattccctcctctccccggcgccca 104 |||||||||||||| ||| ||||||| |||||||||| Sbjct: 10815140 gccgccacctcccaatccttcctctcgccggcgccca 10815176
>gb|AC135908.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1275B08, from chromosome 3, complete sequence Length = 108833 Score = 260 bits (131), Expect = 3e-66 Identities = 197/219 (89%) Strand = Plus / Minus Query: 159 gccgtcgcccctctttcccggccgtcgcggcggcggtctcttcgatggcgtcctcggatg 218 |||| |||||| | |||||| ||||||| |||||| | | ||||||||||||||||| Sbjct: 39650 gccgccgccccgccttcccgtccgtcgccgcggcgtccacatcgatggcgtcctcggaga 39591 Query: 219 gcgaggagaagaaggagaccaagctgtggggcgggcgcttcgaggagggcgtcaccgacg 278 ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 39590 gcgaggagaggaaggagaccaagctgtggggcgggcgattcgaggagggcgtcaccgacg 39531 Query: 279 ccgtggagcgcttcacggagtcaatctcctacgactggcagctgtacaagtacgatatca 338 ||||||| | ||||| ||||| |||||||||||||||||||| ||||||||||| |||| Sbjct: 39530 ccgtggaagggttcaccgagtccatctcctacgactggcagctctacaagtacgacatca 39471 Query: 339 tgggcagcaaggcccacgcgtccatgctcgccgcccagg 377 ||||||||||||||||||| |||||||||||||| |||| Sbjct: 39470 tgggcagcaaggcccacgcatccatgctcgccgcgcagg 39432 Score = 50.1 bits (25), Expect = 0.006 Identities = 34/37 (91%) Strand = Plus / Minus Query: 68 gccgccacctcccattccctcctctccccggcgccca 104 |||||||||||||| ||| ||||||| |||||||||| Sbjct: 39747 gccgccacctcccaatccttcctctcgccggcgccca 39711
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 260 bits (131), Expect = 3e-66 Identities = 197/219 (89%) Strand = Plus / Plus Query: 159 gccgtcgcccctctttcccggccgtcgcggcggcggtctcttcgatggcgtcctcggatg 218 |||| |||||| | |||||| ||||||| |||||| | | ||||||||||||||||| Sbjct: 10813338 gccgccgccccgccttcccgtccgtcgccgcggcgtccacatcgatggcgtcctcggaga 10813397 Query: 219 gcgaggagaagaaggagaccaagctgtggggcgggcgcttcgaggagggcgtcaccgacg 278 ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct: 10813398 gcgaggagaggaaggagaccaagctgtggggcgggcgattcgaggagggcgtcaccgacg 10813457 Query: 279 ccgtggagcgcttcacggagtcaatctcctacgactggcagctgtacaagtacgatatca 338 ||||||| | ||||| ||||| |||||||||||||||||||| ||||||||||| |||| Sbjct: 10813458 ccgtggaagggttcaccgagtccatctcctacgactggcagctctacaagtacgacatca 10813517 Query: 339 tgggcagcaaggcccacgcgtccatgctcgccgcccagg 377 ||||||||||||||||||| |||||||||||||| |||| Sbjct: 10813518 tgggcagcaaggcccacgcatccatgctcgccgcgcagg 10813556 Score = 50.1 bits (25), Expect = 0.006 Identities = 34/37 (91%) Strand = Plus / Plus Query: 68 gccgccacctcccattccctcctctccccggcgccca 104 |||||||||||||| ||| ||||||| |||||||||| Sbjct: 10813241 gccgccacctcccaatccttcctctcgccggcgccca 10813277
>emb|AJ864557.1| Mastigamoeba balamuthi partial nagB gene for glucosamine-6-phosphate isomerase, exons 1-3 Length = 539 Score = 46.1 bits (23), Expect = 0.092 Identities = 26/27 (96%) Strand = Plus / Plus Query: 258 tcgaggagggcgtcaccgacgccgtgg 284 |||||||||| |||||||||||||||| Sbjct: 289 tcgaggagggggtcaccgacgccgtgg 315
>gb|AF509565.1| Streptomyces sp. JP95 griseorhodin biosynthesis gene cluster, complete sequence Length = 36905 Score = 46.1 bits (23), Expect = 0.092 Identities = 26/27 (96%) Strand = Plus / Minus Query: 133 ccccgtcgcccgcgccgtcgccctccg 159 ||||||||||||||||| ||||||||| Sbjct: 24416 ccccgtcgcccgcgccgccgccctccg 24390
>emb|BX005327.9| Zebrafish DNA sequence from clone DKEY-65B16 in linkage group 7, complete sequence Length = 237129 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 392 ggtgatagggatattatcttgg 413 |||||||||||||||||||||| Sbjct: 140084 ggtgatagggatattatcttgg 140063
>emb|BX004790.9| Zebrafish DNA sequence from clone CH211-215J7 in linkage group 7, complete sequence Length = 209666 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 392 ggtgatagggatattatcttgg 413 |||||||||||||||||||||| Sbjct: 90678 ggtgatagggatattatcttgg 90657
>dbj|AB056818.1| Macaca fascicularis brain cDNA clone:QflA-15470, full insert sequence Length = 3248 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 75 cctcccattccctcctctcccc 96 |||||||||||||||||||||| Sbjct: 1886 cctcccattccctcctctcccc 1865
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 193 ggtctcttcgatggcgtcctcg 214 |||||||||||||||||||||| Sbjct: 3008297 ggtctcttcgatggcgtcctcg 3008318 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 135 ccgtcgcccgcgccgtcgcc 154 |||||||||||||||||||| Sbjct: 4387220 ccgtcgcccgcgccgtcgcc 4387239
>gb|AC003098.1|AC003098 Homo sapiens chromosome 17, clone HRPC905N1, complete sequence Length = 94752 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 75 cctcccattccctcctctcccc 96 |||||||||||||||||||||| Sbjct: 40262 cctcccattccctcctctcccc 40283
>gb|AE001274.2| Leishmania major strain Friedlin chromosome 1, complete sequence Length = 268984 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 145 cgccgtcgccctccgccgtcgcccc 169 ||||||| ||||||||||||||||| Sbjct: 268274 cgccgtcaccctccgccgtcgcccc 268298
>gb|AC079843.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0013J21, complete sequence Length = 155290 Score = 42.1 bits (21), Expect = 1.4 Identities = 31/33 (93%), Gaps = 1/33 (3%) Strand = Plus / Minus Query: 135 ccgtcgcccgcgccgtcgccctccgccgtcgcc 167 ||||||||| |||||||||||| |||||||||| Sbjct: 93717 ccgtcgccctcgccgtcgccct-cgccgtcgcc 93686
>gb|AC145127.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone Pseudo10p0.0-10p4.4, complete sequence Length = 2331000 Score = 42.1 bits (21), Expect = 1.4 Identities = 31/33 (93%), Gaps = 1/33 (3%) Strand = Plus / Minus Query: 135 ccgtcgcccgcgccgtcgccctccgccgtcgcc 167 ||||||||| |||||||||||| |||||||||| Sbjct: 2115577 ccgtcgccctcgccgtcgccct-cgccgtcgcc 2115546
>gb|AC079385.18| Homo sapiens 12q BAC RP11-482D24 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 181609 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 73 cacctcccattccctcctctccccg 97 ||||||||||||||||||| ||||| Sbjct: 48545 cacctcccattccctcctcaccccg 48521
>gb|DQ295222.1| Spironucleus barkhanus cytosolic heat shock protein 90 (HSP90) mRNA, complete cds Length = 2278 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 221 gaggagaagaaggagaccaag 241 ||||||||||||||||||||| Sbjct: 883 gaggagaagaaggagaccaag 903
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 42.1 bits (21), Expect = 1.4 Identities = 31/33 (93%), Gaps = 1/33 (3%) Strand = Plus / Minus Query: 135 ccgtcgcccgcgccgtcgccctccgccgtcgcc 167 ||||||||| |||||||||||| |||||||||| Sbjct: 2115577 ccgtcgccctcgccgtcgccct-cgccgtcgcc 2115546
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 85 cctcctctccccggcgcccac 105 ||||||||||||||||||||| Sbjct: 21906729 cctcctctccccggcgcccac 21906749
>dbj|AP004729.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0006A22 Length = 190690 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 85 cctcctctccccggcgcccac 105 ||||||||||||||||||||| Sbjct: 129214 cctcctctccccggcgcccac 129234
>dbj|AK106254.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-100-E07, full insert sequence Length = 1629 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 85 cctcctctccccggcgcccac 105 ||||||||||||||||||||| Sbjct: 196 cctcctctccccggcgcccac 216
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 42.1 bits (21), Expect = 1.4 Identities = 31/33 (93%), Gaps = 1/33 (3%) Strand = Plus / Minus Query: 135 ccgtcgcccgcgccgtcgccctccgccgtcgcc 167 ||||||||| |||||||||||| |||||||||| Sbjct: 2115528 ccgtcgccctcgccgtcgccct-cgccgtcgcc 2115497
>gb|AC169705.1| Rhesus Macaque BAC CH250-174C17 (Children's Hospital Oakland Research Institute Rhesus macaque Adult Male BAC Library) complete sequence Length = 181644 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 cctcccattccctcctctcc 94 |||||||||||||||||||| Sbjct: 132325 cctcccattccctcctctcc 132344
>gb|AF236093.1| Theileria sp. China (cattle) major piroplasm surface protein gene, complete cds Length = 890 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 222 aggagaagaaggagaccaag 241 |||||||||||||||||||| Sbjct: 434 aggagaagaaggagaccaag 453
>emb|CT005241.3| Pan troglodytes chromosome X clone PTB-093L20 map Xq28, complete sequence Length = 181643 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 397 tagggatattatcttggagg 416 |||||||||||||||||||| Sbjct: 8099 tagggatattatcttggagg 8118
>gb|CP000316.1| Polaromonas sp. JS666, complete genome Length = 5200264 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 273 ccgacgccgtggagcgcttc 292 |||||||||||||||||||| Sbjct: 2402721 ccgacgccgtggagcgcttc 2402702
>gb|AC091503.2| Rattus norvegicus strain Brown Norway clone RP31-446A15, complete sequence Length = 178963 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 72 ccacctcccattccctcctctccc 95 ||||||||| |||||||||||||| Sbjct: 82459 ccacctccccttccctcctctccc 82436
>emb|AL031007.1|HS757P12 Human DNA sequence from clone RP4-757P12 on chromosome Xp22.11-22.31 Contains part of the SCML2 gene forsex comb on midleg-like 2 (Drosophila), complete sequence Length = 47167 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 397 tagggatattatcttggagg 416 |||||||||||||||||||| Sbjct: 45061 tagggatattatcttggagg 45080
>emb|AL939128.1|SCO939128 Streptomyces coelicolor A3(2) complete genome; segment 25/29 Length = 296500 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 127 caccttccccgtcgcccgcgccgtcgcc 154 ||||||||||| |||||||| ||||||| Sbjct: 76415 caccttccccggcgcccgcgtcgtcgcc 76442
>emb|AL939119.1|SCO939119 Streptomyces coelicolor A3(2) complete genome; segment 16/29 Length = 299050 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 259 cgaggagggcgtcaccgacg 278 |||||||||||||||||||| Sbjct: 113850 cgaggagggcgtcaccgacg 113831
>gb|AC104117.2| Homo sapiens chromosome 5 clone RP11-281O15, complete sequence Length = 211975 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 73 cacctcccattccctcctctcccc 96 |||||||| ||||||||||||||| Sbjct: 89164 cacctccccttccctcctctcccc 89187
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 241 gctgtggggcgggcgcttcg 260 |||||||||||||||||||| Sbjct: 3755762 gctgtggggcgggcgcttcg 3755743
>emb|AL773508.6| Mouse DNA sequence from clone RP23-253D15 on chromosome 2, complete sequence Length = 132091 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 77 tcccattccctcctctcccc 96 |||||||||||||||||||| Sbjct: 95233 tcccattccctcctctcccc 95252
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 138 tcgcccgcgccgtcgccctc 157 |||||||||||||||||||| Sbjct: 158838 tcgcccgcgccgtcgccctc 158819
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 145 cgccgtcgccctccgccgtc 164 |||||||||||||||||||| Sbjct: 3236772 cgccgtcgccctccgccgtc 3236753
>gb|AC062033.2| Homo sapiens BAC clone RP11-544E11 from 2, complete sequence Length = 208492 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 cctcccattccctcctctcc 94 |||||||||||||||||||| Sbjct: 39886 cctcccattccctcctctcc 39905
>gb|AY826885.1| Heterocapsa triquetra clone HTPSAL1 chloroplast photosystem I subunit XI mRNA, complete cds; nuclear gene for chloroplast product Length = 1197 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 223 ggagaagaaggagaccaagc 242 |||||||||||||||||||| Sbjct: 333 ggagaagaaggagaccaagc 352
>gb|AC073592.11| Homo sapiens 12 BAC RP11-83B20 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 161127 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 83 tccctcctctccccggcgcc 102 |||||||||||||||||||| Sbjct: 5294 tccctcctctccccggcgcc 5275
>gb|AC096753.5| Homo sapiens BAC clone RP11-458O14 from 2, complete sequence Length = 102620 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 80 cattccctcctctccccggc 99 |||||||||||||||||||| Sbjct: 86452 cattccctcctctccccggc 86433
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 132 tccccgtcgcccgcgccgtc 151 |||||||||||||||||||| Sbjct: 5195558 tccccgtcgcccgcgccgtc 5195539 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 141 cccgcgccgtcgccctccgccgtcgccc 168 ||||||||||||| ||||||||| |||| Sbjct: 3977778 cccgcgccgtcgcgctccgccgtggccc 3977751
>gb|AC010442.7| Homo sapiens chromosome 5 clone CTD-2228K2, complete sequence Length = 153197 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 10 ccctctccagtctcccacct 29 |||||||||||||||||||| Sbjct: 123763 ccctctccagtctcccacct 123782
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 183 tcgcggcggcggtctcttcgatgg 206 ||||||||||||| |||||||||| Sbjct: 1690100 tcgcggcggcggtgtcttcgatgg 1690077
>dbj|AP006841.1| Bacteroides fragilis YCH46 DNA, complete genome Length = 5277274 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 183 tcgcggcggcggtctcttcg 202 |||||||||||||||||||| Sbjct: 3268387 tcgcggcggcggtctcttcg 3268406 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 183 tcgcggcggcggtctcttcg 202 |||||||||||||||||||| Sbjct: 3263029 tcgcggcggcggtctcttcg 3263048
>dbj|AP004843.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:B1103G11 Length = 182931 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 145 cgccgtcgccctccgccgtc 164 |||||||||||||||||||| Sbjct: 108959 cgccgtcgccctccgccgtc 108940
>gb|AE005092.1| Halobacterium sp. NRC-1 section 123 of 170 of the complete genome Length = 14939 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 136 cgtcgcccgcgccgtcgccc 155 |||||||||||||||||||| Sbjct: 1401 cgtcgcccgcgccgtcgccc 1420
>gb|AC008044.4|AC008044 Homo sapiens chromosome 14 BAC containing genes for ABH and nuclear receptor coactivator NCoA-62, complete sequence Length = 125304 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 78 cccattccctcctctccccg 97 |||||||||||||||||||| Sbjct: 33780 cccattccctcctctccccg 33799
>gb|U90790.1|PNU90790 Potentilla norvegica internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence, and 26S ribosomal RNA gene, partial sequence Length = 631 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 373 ccagggtttgataaccaccg 392 |||||||||||||||||||| Sbjct: 553 ccagggtttgataaccaccg 534
>gb|AE017143.1| Haemophilus ducreyi strain 35000HP complete genome Length = 1698955 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 57 ccacgctcatggccgccacc 76 |||||||||||||||||||| Sbjct: 862440 ccacgctcatggccgccacc 862421
>dbj|AP004468.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT09A24, TM0003, complete sequence Length = 88828 Score = 40.1 bits (20), Expect = 5.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 139 cgcccgcgccgtcgccctccgccg 162 |||| ||||||||||||||||||| Sbjct: 27161 cgccggcgccgtcgccctccgccg 27184
>dbj|D50305.1|THETSPG2 Theileria sp. DNA for piroplasm surface antigen, complete cds Length = 897 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 222 aggagaagaaggagaccaag 241 |||||||||||||||||||| Sbjct: 441 aggagaagaaggagaccaag 460
>dbj|AB010702.1| Theileria sp. gene for major piroplasm surface protein, partial cds, isolate Easten Texas Length = 784 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 222 aggagaagaaggagaccaag 241 |||||||||||||||||||| Sbjct: 420 aggagaagaaggagaccaag 439
>dbj|AB070950.1| Streptomyces avermitilis peptide-1 biosynthetic gene cluster Length = 21391 Score = 40.1 bits (20), Expect = 5.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 141 cccgcgccgtcgccctccgccgtcgccc 168 ||||||||||||| ||||||||| |||| Sbjct: 18414 cccgcgccgtcgcgctccgccgtggccc 18441 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,839,980 Number of Sequences: 3902068 Number of extensions: 2839980 Number of successful extensions: 79490 Number of sequences better than 10.0: 51 Number of HSP's better than 10.0 without gapping: 48 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 77788 Number of HSP's gapped (non-prelim): 1706 length of query: 423 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 401 effective length of database: 17,147,199,772 effective search space: 6876027108572 effective search space used: 6876027108572 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
