ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart51a12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_511222.1| PREDICTED: Pan troglodytes similar to NDRG fami... 38 2.3
2emb|AL162752.2|NMA1Z2491 Neisseria meningitidis serogroup A stra... 36 9.3
3gb|CP000249.1| Frankia sp. CcI3, complete genome 36 9.3
4gb|AE002098.2| Neisseria meningitidis MC58, complete genome 36 9.3
5dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete g... 36 9.3
6gb|AE004969.1| Neisseria gonorrhoeae FA 1090, complete genome 36 9.3
7gb|AE017221.1| Thermus thermophilus HB27, complete genome 36 9.3

>ref|XM_511222.1| PREDICTED: Pan troglodytes similar to NDRG family member 4; NDRG
           family, member 4; smooth muscle-associated protein 8
           (LOC454376), mRNA
          Length = 1158

 Score = 38.2 bits (19), Expect = 2.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 33  acctcgcccgccgtccctaggcc 55
           ||||||||| |||||||||||||
Sbjct: 285 acctcgccctccgtccctaggcc 307



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>emb|AL162752.2|NMA1Z2491 Neisseria meningitidis serogroup A strain Z2491 complete genome;
             segment 1/7
          Length = 340806

 Score = 36.2 bits (18), Expect = 9.3
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 28    gcacgacctcgcccgccg 45
             ||||||||||||||||||
Sbjct: 47133 gcacgacctcgcccgccg 47116



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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 36.2 bits (18), Expect = 9.3
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                     
Query: 34      cctcgcccgccgtccctaggcc 55
               ||||| ||||||||||||||||
Sbjct: 1588686 cctcggccgccgtccctaggcc 1588665



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>gb|AE002098.2| Neisseria meningitidis MC58, complete genome
          Length = 2272360

 Score = 36.2 bits (18), Expect = 9.3
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 28     gcacgacctcgcccgccg 45
              ||||||||||||||||||
Sbjct: 218707 gcacgacctcgcccgccg 218724



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>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome
          Length = 1849742

 Score = 36.2 bits (18), Expect = 9.3
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 38     gcccgccgtccctaggcc 55
              ||||||||||||||||||
Sbjct: 331647 gcccgccgtccctaggcc 331664



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>gb|AE004969.1| Neisseria gonorrhoeae FA 1090, complete genome
          Length = 2153922

 Score = 36.2 bits (18), Expect = 9.3
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                 
Query: 28      gcacgacctcgcccgccg 45
               ||||||||||||||||||
Sbjct: 1736465 gcacgacctcgcccgccg 1736448



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>gb|AE017221.1| Thermus thermophilus HB27, complete genome
          Length = 1894877

 Score = 36.2 bits (18), Expect = 9.3
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                 
Query: 38      gcccgccgtccctaggcc 55
               ||||||||||||||||||
Sbjct: 1553814 gcccgccgtccctaggcc 1553797


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 193,256
Number of Sequences: 3902068
Number of extensions: 193256
Number of successful extensions: 14624
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14542
Number of HSP's gapped (non-prelim): 82
length of query: 63
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 42
effective length of database: 17,151,101,840
effective search space: 720346277280
effective search space used: 720346277280
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
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