Clone Information

BLAST Search Result

Clone Name	bart51a07
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	LARP1_HUMAN (Q6PKG0) La-related protein 1 (La ribonucleoprotein ...	32	0.32
2	CO4A4_HUMAN (P53420) Collagen alpha-4(IV) chain precursor	31	0.93
3	HCN2_MOUSE (O88703) Potassium/sodium hyperpolarization-activated...	30	1.2
4	KIF12_HUMAN (Q96FN5) Kinesin-like protein KIF12	30	1.2
5	CB014_HUMAN (Q9H0H9) Protein C2orf14	30	1.2
6	IF2_MYCPA (Q73VV4) Translation initiation factor IF-2	30	1.6
7	COL40_CAEEL (P34804) Cuticle collagen 40	30	2.1
8	RNF25_HUMAN (Q96BH1) RING finger protein 25 (EC 6.3.2.-)	30	2.1
9	CO6A2_HUMAN (P12110) Collagen alpha-2(VI) chain precursor	30	2.1
10	SPEE2_STRCO (Q9X8S2) Probable spermidine synthase 2 (EC 2.5.1.16...	29	2.7
11	HXD12_HUMAN (P35452) Homeobox protein Hox-D12 (Hox-4H)	29	2.7
12	CO1A1_HUMAN (P02452) Collagen alpha-1(I) chain precursor	29	2.7
13	CO6A2_MOUSE (Q02788) Collagen alpha-2(VI) chain precursor	29	2.7
14	TSC1_RAT (Q9Z136) Hamartin (Tuberous sclerosis 1 protein homolog)	29	3.5
15	IE18_PRVKA (P33479) Immediate-early protein IE180	29	3.5
16	DSG1_BOVIN (Q03763) Desmoglein-1 precursor (Desmosomal glycoprot...	29	3.5
17	TAOK2_MOUSE (Q6ZQ29) Serine/threonine-protein kinase TAO2 (EC 2....	29	3.5
18	IE18_PRVIF (P11675) Immediate-early protein IE180	29	3.5
19	SFTPA_HORSE (Q95L88) Pulmonary surfactant-associated protein A p...	28	4.6
20	GUN3_BACS4 (P19570) Endoglucanase C precursor (EC 3.2.1.4) (Endo...	28	4.6
21	CO3A1_BOVIN (P04258) Collagen alpha-1(III) chain	28	4.6
22	CO2A1_HUMAN (P02458) Collagen alpha-1(II) chain precursor [Conta...	28	4.6
23	UL38_HCMVA (P16779) Protein UL38	28	4.6
24	TXLNA_HUMAN (P40222) Alpha-taxilin	28	6.0
25	DPY10_CAEEL (P35800) Cuticle collagen dpy-10 precursor (Protein ...	28	6.0
26	CO8A2_MOUSE (P25318) Collagen alpha-2(VIII) chain precursor (End...	28	6.0
27	COHA1_MOUSE (Q07563) Collagen alpha-1(XVII) chain (Bullous pemph...	28	6.0
28	SAHH3_MOUSE (Q68FL4) Putative adenosylhomocysteinase 3 (EC 3.3.1...	28	6.0
29	PCRB_PYRAE (Q8ZTX5) Protein pcrB homolog	28	6.0
30	COGA1_HUMAN (Q07092) Collagen alpha-1(XVI) chain precursor	28	6.0
31	CO5A2_HUMAN (P05997) Collagen alpha-2(V) chain precursor	28	6.0
32	VEGFB_BOVIN (Q9XS49) Vascular endothelial growth factor B precur...	28	6.0
33	CO9A1_CHICK (P12106) Collagen alpha-1(IX) chain precursor	28	7.9
34	MAP2_HUMAN (P11137) Microtubule-associated protein 2 (MAP 2) (MA...	28	7.9
35	BSN_RAT (O88778) Bassoon protein	28	7.9
36	BSN_HUMAN (Q9UPA5) Bassoon protein (Zinc-finger protein 231)	28	7.9
37	CO3A1_HUMAN (P02461) Collagen alpha-1(III) chain precursor	28	7.9
38	CO4A1_DROME (P08120) Collagen alpha-1(IV) chain precursor	28	7.9
39	GID_ANASP (Q8YNJ4) tRNA uridine 5-carboxymethylaminomethyl modif...	28	7.9
40	COL1_CAEEL (P08124) Cuticle collagen 1 precursor (Protein squat-...	28	7.9
41	RERE_MOUSE (Q80TZ9) Arginine-glutamic acid dipeptide repeats pro...	28	7.9
42	3BP2_HUMAN (P78314) SH3 domain-binding protein 2 (3BP-2)	28	7.9
43	CO7A1_HUMAN (Q02388) Collagen alpha-1(VII) chain precursor (Long...	28	7.9
44	RFNG_CHICK (O12972) Beta-1,3-N-acetylglucosaminyltransferase rad...	28	7.9
45	SWR1_NEUCR (Q7S133) Helicase swr-1 (EC 3.6.1.-)	28	7.9

>LARP1_HUMAN (Q6PKG0) La-related protein 1 (La ribonucleoprotein domain family|
           member 1)
          Length = 1096

 Score = 32.3 bits (72), Expect = 0.32
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = +2

Query: 152 VPAAEGARLQEGRPGAHGPLHLGGADGRVSAGDHEGLLAPPRHV 283
           +P AEG  + +G  G   P   GGA G   AG  + + APP  V
Sbjct: 81  LPGAEGPAISDGEEGGGEPGAGGGAAGAAGAGRRDFVEAPPPKV 124

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>CO4A4_HUMAN (P53420) Collagen alpha-4(IV) chain precursor|
          Length = 1690

 Score = 30.8 bits (68), Expect = 0.93
 Identities = 19/49 (38%), Positives = 21/49 (42%), Gaps = 6/49 (12%)
 Frame = +2

Query: 152 VPAAEGARLQEGRPGAHGP------LHLGGADGRVSAGDHEGLLAPPRH 280
           VP  +G R   G PGA GP      L L G  GR       G+  PP H
Sbjct: 778 VPGIKGPRGDPGCPGAEGPAGIPGFLGLKGPKGREGHAGFPGVPGPPGH 826



 Score = 28.9 bits (63), Expect = 3.5
 Identities = 17/30 (56%), Positives = 18/30 (60%)
 Frame = +2

Query: 185 GRPGAHGPLHLGGADGRVSAGDHEGLLAPP 274
           GRPGAHGP  L G  G    GD +GL  PP
Sbjct: 876 GRPGAHGPPGLPGIPG--PFGD-DGLPGPP 902

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>HCN2_MOUSE (O88703) Potassium/sodium hyperpolarization-activated cyclic|
           nucleotide-gated channel 2 (Brain cyclic nucleotide
           gated channel 2) (BCNG-2) (Hyperpolarization-activated
           cation channel 1) (HAC-1)
          Length = 863

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 18/43 (41%), Positives = 19/43 (44%)
 Frame = -3

Query: 276 RGGARRPSWSPAETLPSAPPRWRGPCAPGRPSCSRAPSAAGTT 148
           RGG  RP  SP  T    PP    P AP +P    AP    TT
Sbjct: 4   RGGGGRPGDSPGTTPAPGPPPPPPPPAPPQPQPPPAPPPNPTT 46

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>KIF12_HUMAN (Q96FN5) Kinesin-like protein KIF12|
          Length = 646

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -3

Query: 231 PSA-PPRWRGPCAPGRPSCSRAPSAAGTTR 145
           PSA PP W  PC+PG   C R  S +  T+
Sbjct: 539 PSARPPPWAPPCSPGSAKCPRERSHSDWTQ 568

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>CB014_HUMAN (Q9H0H9) Protein C2orf14|
          Length = 118

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
 Frame = +2

Query: 146 RVVPAAEGARLQEGRP--GAHGPLHLGGADGRVSAGDHEGLL-APPR 277
           + V  A+ +  +E +P  G+ GPLH+ G DG V      GL+  PPR
Sbjct: 34  QAVSGAQVSSWRERQPFGGSRGPLHILGTDGNVDTTGKLGLVPTPPR 80

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>IF2_MYCPA (Q73VV4) Translation initiation factor IF-2|
          Length = 925

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 19/46 (41%), Positives = 21/46 (45%)
 Frame = -3

Query: 276 RGGARRPSWSPAETLPSAPPRWRGPCAPGRPSCSRAPSAAGTTRNG 139
           R GA RP  SP     + PPR  G   PGRP+   AP   G    G
Sbjct: 203 RPGAPRPGASPG----NMPPRPGGVGGPGRPARPGAPRPGGGRPGG 244

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>COL40_CAEEL (P34804) Cuticle collagen 40|
          Length = 306

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 14/30 (46%), Positives = 15/30 (50%)
 Frame = +2

Query: 185 GRPGAHGPLHLGGADGRVSAGDHEGLLAPP 274
           G PG  GP    GADG   +G  EG   PP
Sbjct: 172 GGPGPAGPPGPAGADGNTPSGGGEGPAGPP 201

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>RNF25_HUMAN (Q96BH1) RING finger protein 25 (EC 6.3.2.-)|
          Length = 459

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = -1

Query: 242 QRPCHQHPRGGEVHAPQG 189
           ++P  +HP+GGE HAP+G
Sbjct: 348 RQPERRHPKGGECHAPKG 365

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>CO6A2_HUMAN (P12110) Collagen alpha-2(VI) chain precursor|
          Length = 1019

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +2

Query: 155 PAAEGARLQEGRPGAHGPLHLGGADGRVSAGDHEGLLAP 271
           P ++G + ++G PG  GP  L G  G   A    GL  P
Sbjct: 435 PGSDGPKGEKGDPGPEGPRGLAGEVGNKGAKGDRGLPGP 473

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>SPEE2_STRCO (Q9X8S2) Probable spermidine synthase 2 (EC 2.5.1.16) (Putrescine|
           aminopropyltransferase 2) (SPDSY 2)
          Length = 554

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 231 PSAPPRWRGPCAPGRPS 181
           P +PP W GPC P  P+
Sbjct: 10  PGSPPSWGGPCGPEAPA 26

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>HXD12_HUMAN (P35452) Homeobox protein Hox-D12 (Hox-4H)|
          Length = 275

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = -3

Query: 231 PSAPPRWRGPCAPGRPSCSRAPSAAGTTR 145
           PS P   R PC+PGRP+    P  A   R
Sbjct: 183 PSLPDGKRCPCSPGRPAVGGGPGEARKKR 211

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>CO1A1_HUMAN (P02452) Collagen alpha-1(I) chain precursor|
          Length = 1464

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 18/40 (45%), Positives = 19/40 (47%)
 Frame = +2

Query: 155 PAAEGARLQEGRPGAHGPLHLGGADGRVSAGDHEGLLAPP 274
           P A+GAR   G PGA G     GA GRV      G   PP
Sbjct: 859 PGAKGARGSAGPPGATG---FPGAAGRVGPPGPSGNAGPP 895

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>CO6A2_MOUSE (Q02788) Collagen alpha-2(VI) chain precursor|
          Length = 1029

 Score = 29.3 bits (64), Expect = 2.7
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +2

Query: 155 PAAEGARLQEGRPGAHGPLHLGGADGRVSAGDHEGLLAP 271
           P ++G + ++G PG  GP  L G  G   A    GL  P
Sbjct: 445 PGSDGPKGEKGDPGPEGPRGLAGEVGSKGAKGDRGLPGP 483

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>TSC1_RAT (Q9Z136) Hamartin (Tuberous sclerosis 1 protein homolog)|
          Length = 1163

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = -3

Query: 282 TWRGGARRPSWSPAETLPSAPPRWRGPCAPGRPSCSRA 169
           T  GG   PS +PA + P APP  +  CA G  S + A
Sbjct: 379 TTTGGKGTPSGTPATSPPPAPPCPQDDCAHGPASQASA 416

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>IE18_PRVKA (P33479) Immediate-early protein IE180|
          Length = 1446

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 18/38 (47%), Positives = 20/38 (52%)
 Frame = -3

Query: 267 ARRPSWSPAETLPSAPPRWRGPCAPGRPSCSRAPSAAG 154
           A RP   PAE  P  PP W  P  PG    + AP+AAG
Sbjct: 798 AARPG--PAEPAPGLPPLW--PEQPGLVVPAPAPAAAG 831

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>DSG1_BOVIN (Q03763) Desmoglein-1 precursor (Desmosomal glycoprotein 1) (DG1)|
           (DGI) (Pemphigus foliaceus antigen)
          Length = 1043

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = -3

Query: 258 PSWSPAETLPSAPPRWRGPCAPGRPSCS 175
           PSW P  T P  PP+   P   G P  S
Sbjct: 779 PSWPPKSTEPVCPPQGTEPTGGGHPPIS 806

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>TAOK2_MOUSE (Q6ZQ29) Serine/threonine-protein kinase TAO2 (EC 2.7.11.1) (Thousand|
            and one amino acid protein 2)
          Length = 1055

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 16/45 (35%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
 Frame = -3

Query: 270  GARRPSW-SPAETLPSAPPRWRGPCAPGRPSCSRAPSAAGTTRNG 139
            G   P+W  PA   P  PP W GP           P+ +GT R G
Sbjct: 968  GMPPPAWRQPALLAPPGPPNWLGP-----------PTQSGTPRGG 1001

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>IE18_PRVIF (P11675) Immediate-early protein IE180|
          Length = 1461

 Score = 28.9 bits (63), Expect = 3.5
 Identities = 18/38 (47%), Positives = 20/38 (52%)
 Frame = -3

Query: 267 ARRPSWSPAETLPSAPPRWRGPCAPGRPSCSRAPSAAG 154
           A RP   PAE  P  PP W  P  PG    + AP+AAG
Sbjct: 809 AARPG--PAEPAPGLPPLW--PEQPGLVVPAPAPAAAG 842

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>SFTPA_HORSE (Q95L88) Pulmonary surfactant-associated protein A precursor (SP-A)|
           (PSP-A) (PSAP)
          Length = 248

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +2

Query: 152 VPAAEGARLQEGRPGAHGPLHLGGADGRVSAGDHEGLLAPP 274
           +P  +G    +G PG  GP+  G   G   +  H+GL+ PP
Sbjct: 41  LPGRDGRDGVKGDPGPPGPI--GPPGGMPGSPGHDGLIGPP 79

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>GUN3_BACS4 (P19570) Endoglucanase C precursor (EC 3.2.1.4)|
           (Endo-1,4-beta-glucanase) (Cellulase)
          Length = 825

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +2

Query: 137 SPFRVVPAAEGARLQEGRPGAHGPLHLGGADGRVSAGDHEGL 262
           S +   PA     L E RP   G L L   DG+V+  D +G+
Sbjct: 52  SNYEKYPALLDGGLDERRPSEAGALQLVEVDGQVTLADQDGV 93

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>CO3A1_BOVIN (P04258) Collagen alpha-1(III) chain|
          Length = 1049

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 16/40 (40%), Positives = 18/40 (45%)
 Frame = +2

Query: 155 PAAEGARLQEGRPGAHGPLHLGGADGRVSAGDHEGLLAPP 274
           P   GA   +G PGA GPL + G  G        GL  PP
Sbjct: 773 PGERGAPGPQGPPGAPGPLGIAGLTGA------RGLAGPP 806

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>CO2A1_HUMAN (P02458) Collagen alpha-1(II) chain precursor [Contains:|
           Chondrocalcin]
          Length = 1418

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 15/43 (34%), Positives = 18/43 (41%)
 Frame = +2

Query: 146 RVVPAAEGARLQEGRPGAHGPLHLGGADGRVSAGDHEGLLAPP 274
           R +P  +G    EG PG  GP    G  G       +GL  PP
Sbjct: 560 RGLPGKDGETGAEGPPGPAGPAGERGEQGAPGPSGFQGLPGPP 602

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>UL38_HCMVA (P16779) Protein UL38|
          Length = 331

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -3

Query: 261 RPSWSPAETLPSAPPRWRGPCAPGRPSCSRAPSAAGTT 148
           +PS +PA+ + SAPP    P +   P+ +  PS++  T
Sbjct: 249 QPSHAPAQRVLSAPPSLPLPVSEEDPAAAATPSSSAAT 286

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>TXLNA_HUMAN (P40222) Alpha-taxilin|
          Length = 546

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 14/31 (45%), Positives = 15/31 (48%)
 Frame = -3

Query: 273 GGARRPSWSPAETLPSAPPRWRGPCAPGRPS 181
           G  RRP   P    PS+P     PC PG PS
Sbjct: 500 GPERRPE-GPGAQAPSSPRVTEAPCYPGAPS 529

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>DPY10_CAEEL (P35800) Cuticle collagen dpy-10 precursor (Protein dumpy-10)|
          Length = 356

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -3

Query: 249 SPAETLPSAPPRWR-GPCAPGRPSCSRAPSAAGTTRNG 139
           +P ET P+ PP +R GP APG     + P+  G  + G
Sbjct: 210 APGETGPTGPPGYRGGPGAPG----DKGPTPEGDLKEG 243

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>CO8A2_MOUSE (P25318) Collagen alpha-2(VIII) chain precursor (Endothelial|
           collagen)
          Length = 699

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +2

Query: 179 QEGRPGAHGPLHLGGADGRVSAGDHEGLLAPP 274
           ++G+PG  GP  LGG  G   +    G   PP
Sbjct: 340 EDGKPGEQGPQGLGGPPGLPGSAGLPGRRGPP 371

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>COHA1_MOUSE (Q07563) Collagen alpha-1(XVII) chain (Bullous pemphigoid antigen|
           2) (180 kDa bullous pemphigoid antigen 2)
          Length = 1470

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +2

Query: 155 PAAEGARLQEGRPGAHGPLHLGGADGRVSAGDHEGLLAPP 274
           P   G     G PGA G +   GADG+  +   +GL   P
Sbjct: 731 PGIRGLPGAVGEPGAKGAMGPAGADGQQGSRGEQGLTGMP 770

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>SAHH3_MOUSE (Q68FL4) Putative adenosylhomocysteinase 3 (EC 3.3.1.1)|
           (S-adenosyl-L-homocysteine hydrolase 3) (AdoHcyase 3)
          Length = 613

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = -3

Query: 273 GGARRPSWSPAETLPSAPPRWRGPCAPGRPSCSRAPSAAGTTRN 142
           G    P+ +PA   P AP    GP A   P+  + P A+   R+
Sbjct: 48  GDPEAPAPAPAAERPPAPGPGSGPTAALSPAAGKVPQASAMKRS 91

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>PCRB_PYRAE (Q8ZTX5) Protein pcrB homolog|
          Length = 239

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 138 RHFASFPPRRARDCRKAALGRMDLSTSGVLMAGSL 242
           RHF    P ++ D  K A   ++  T G+L+ GSL
Sbjct: 12  RHFTLIDPDKSVDYLKIAKYALEAGTDGILIGGSL 46

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>COGA1_HUMAN (Q07092) Collagen alpha-1(XVI) chain precursor|
          Length = 1603

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 15/43 (34%), Positives = 19/43 (44%)
 Frame = +2

Query: 155  PAAEGARLQEGRPGAHGPLHLGGADGRVSAGDHEGLLAPPRHV 283
            P   G +   G+PG  G     GA+G   A   +G   PP HV
Sbjct: 1250 PGLPGPKGDCGKPGPPGSTGRPGAEGEPGAMGPQGRPGPPGHV 1292

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>CO5A2_HUMAN (P05997) Collagen alpha-2(V) chain precursor|
          Length = 1496

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 14/42 (33%), Positives = 17/42 (40%)
 Frame = +2

Query: 155 PAAEGARLQEGRPGAHGPLHLGGADGRVSAGDHEGLLAPPRH 280
           P ++G R + G  G  GP    G DG        G   PP H
Sbjct: 137 PGSQGPRGERGPKGRPGPRGPQGIDGEPGVPGQPGAPGPPGH 178

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>VEGFB_BOVIN (Q9XS49) Vascular endothelial growth factor B precursor (VEGF-B)|
           (VEGF-related factor) (VRF)
          Length = 207

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 17/40 (42%), Positives = 17/40 (42%)
 Frame = -3

Query: 258 PSWSPAETLPSAPPRWRGPCAPGRPSCSRAPSAAGTTRNG 139
           P W PA   PS         APG PS   APSAA     G
Sbjct: 151 PGWDPAPGAPSPADITHPTPAPG-PSAHAAPSAASALTPG 189

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>CO9A1_CHICK (P12106) Collagen alpha-1(IX) chain precursor|
          Length = 920

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
 Frame = +2

Query: 155 PAAEGARLQEGRPGAHGPLHLGGADGRVSAG--DHEGLLAPP 274
           P A+G    +G PGA GP    G  G   A     +GLL PP
Sbjct: 320 PGADGLTGPDGSPGATGPKGQKGEPGPPGARGLPGKGLLGPP 361

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>MAP2_HUMAN (P11137) Microtubule-associated protein 2 (MAP 2) (MAP-2)|
          Length = 1827

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
 Frame = -3

Query: 276  RGGARRPSWSPAETL--PSAPPRW--RGPCAPGRPSCSRAPSAAGTTRN 142
            + G   P+ +P  T   P  PP +  R P  PG PS  R P   GT ++
Sbjct: 1587 KSGTSTPT-TPGSTAITPGTPPSYSSRTPGTPGTPSYPRTPHTPGTPKS 1634

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>BSN_RAT (O88778) Bassoon protein|
          Length = 3937

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -3

Query: 258 PSWSPAETLPSAPPRWRGPCAPGRPSCSRAPSAA 157
           P+  P     ++P + +GP  PG+PS S  P A+
Sbjct: 536 PAGVPQRAAGASPLKQKGPQGPGQPSGSLPPKAS 569

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>BSN_HUMAN (Q9UPA5) Bassoon protein (Zinc-finger protein 231)|
          Length = 3925

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -3

Query: 264  RRPSWSPAETLPSAPPRWRGPCAPGRPSCSRAPSAAGTTR 145
            R P+ S      S PP   GP   G+P+ ++AP A G +R
Sbjct: 2259 RYPAPSRFPIASSVPPA-EGPVYLGKPAAAKAPGAGGPSR 2297

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>CO3A1_HUMAN (P02461) Collagen alpha-1(III) chain precursor|
          Length = 1466

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +2

Query: 155  PAAEGARLQEGRPGAHGPLHLGGADGRVSAGDHEGLLAPP 274
            P  +G+   +G PGA GPL + G  G        GL  PP
Sbjct: 929  PGEKGSPGAQGPPGAPGPLGIAGITGA------RGLAGPP 962

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>CO4A1_DROME (P08120) Collagen alpha-1(IV) chain precursor|
          Length = 1775

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
 Frame = +2

Query: 155 PAAEGARLQEGRPGAHG-PLHLG--GADGRVSAGDHEGLLAPP 274
           P + G +   G PG +G P + G  G  GR  A    GLL PP
Sbjct: 348 PGSTGQKGDRGEPGLNGLPGNPGQKGEPGRAGATGEPGLLGPP 390

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>GID_ANASP (Q8YNJ4) tRNA uridine 5-carboxymethylaminomethyl modification|
           enzyme gid
          Length = 438

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +3

Query: 183 KAALGRMDLSTSGVLMAGSLLETMKASSPRH 275
           + ALG+  L+     M G+LLE + ++SP+H
Sbjct: 364 RLALGKEPLALPPTTMLGALLEFISSASPKH 394

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>COL1_CAEEL (P08124) Cuticle collagen 1 precursor (Protein squat-3) (Protein|
           dumpy-15)
          Length = 296

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 15/40 (37%), Positives = 16/40 (40%)
 Frame = +2

Query: 155 PAAEGARLQEGRPGAHGPLHLGGADGRVSAGDHEGLLAPP 274
           P   GA   +G PG  GP    G DG   A    G   PP
Sbjct: 227 PGPPGAPGNDGPPGPPGPKGAPGPDGPPGADGQSGPPGPP 266

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>RERE_MOUSE (Q80TZ9) Arginine-glutamic acid dipeptide repeats protein|
            (Atrophin-2)
          Length = 1558

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
 Frame = -3

Query: 258  PSWSPAETLPSAPPRWRGPCAPG---RPSCSRAPSAAGT 151
            P   P  T PS PP    P  P    +P CS A S+ G+
Sbjct: 1033 PGGPPPITPPSCPPTSTPPAGPSSSSQPPCSAAVSSGGS 1071

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>3BP2_HUMAN (P78314) SH3 domain-binding protein 2 (3BP-2)|
          Length = 561

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 15/58 (25%)
 Frame = -3

Query: 264 RRPSWSPAETLPSAPPRWRGPC------------APGRPSCSRAPS---AAGTTRNGD 136
           RR S  P  T+P+AP   + PC             PG  +CS + +   A  T+RN D
Sbjct: 275 RRMSDPPLSTMPTAPGLRKPPCFRESASPSPEPWTPGHGACSTSSAAIMATATSRNCD 332

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>CO7A1_HUMAN (Q02388) Collagen alpha-1(VII) chain precursor (Long-chain collagen)|
            (LC collagen)
          Length = 2944

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +2

Query: 155  PAAEGARLQEGRPGAHGPLHLGGADGRVSAGDHEGL 262
            P  +G    +G+PGA GP    GA G+      +GL
Sbjct: 1775 PGLDGRSGLDGKPGAAGPSGPNGAAGKAGDPGRDGL 1810

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>RFNG_CHICK (O12972) Beta-1,3-N-acetylglucosaminyltransferase radical fringe|
           (EC 2.4.1.222) (O-fucosylpeptide
           3-beta-N-acetylglucosaminyltransferase)
          Length = 372

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = -3

Query: 231 PSAPPRWRGPCAPGRPSCSRAPSAAGTTRNGD 136
           P+AP R   P  P RPS  R    AG+   GD
Sbjct: 33  PAAPRRRPPPAGPSRPSPKREARPAGSDVPGD 64

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>SWR1_NEUCR (Q7S133) Helicase swr-1 (EC 3.6.1.-)|
          Length = 1845

 Score = 27.7 bits (60), Expect = 7.9
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = -3

Query: 261 RPSWSPAETLPSAPPRWRGPCAPGRPSCSRAPSAAGTTRN 142
           R S +  ET PSA    R   +P RP+    P+A GT R+
Sbjct: 261 RKSATTHETRPSASRSRRRSPSPRRPATPPKPAAVGTRRS 300


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,870,513
Number of Sequences: 219361
Number of extensions: 528843
Number of successful extensions: 4343
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 2903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4280
length of database: 80,573,946
effective HSP length: 70
effective length of database: 65,218,676
effective search space used: 1565248224
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result