ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart51a03 |
|---|---|
| Clone Library Name | barley_pub |
>LEA14_SOYBN (P46519) Desiccation protectant protein Lea14 homolog| Length = 152 Score = 37.4 bits (85), Expect = 0.019 Identities = 18/72 (25%), Positives = 33/72 (45%) Frame = +2 Query: 251 IDKVKDFIHDIGEKIEEAVGFGKPSADVARIHVPHIGLHRADLVVDVLIKNPNPVPIPLV 430 +DK K+++ E+ KP A V + + + + V + NP PIP+ Sbjct: 5 LDKAKNYV------AEKVTNMPKPEASVTDVDFKRVSRDSVEYLAKVSVSNPYSTPIPIC 58 Query: 431 DIDYLIDSDGRK 466 +I Y + S G++ Sbjct: 59 EIKYSLKSAGKE 70
>LEA14_GOSHI (P46518) Late embryogenesis abundant protein Lea14-A| Length = 151 Score = 37.0 bits (84), Expect = 0.025 Identities = 19/71 (26%), Positives = 33/71 (46%) Frame = +2 Query: 251 IDKVKDFIHDIGEKIEEAVGFGKPSADVARIHVPHIGLHRADLVVDVLIKNPNPVPIPLV 430 ++K KDF+ +++ KP A V+ + + H+ + V + NP IP+ Sbjct: 5 LEKAKDFV------VDKVANIKKPEASVSDVDLKHVSRECVEYGAKVSVSNPYSHSIPIC 58 Query: 431 DIDYLIDSDGR 463 +I Y S GR Sbjct: 59 EISYNFRSAGR 69
>UC29_MAIZE (P80635) Unknown protein from 2D-PAGE of etiolated coleoptile (Spot| 45) (Fragment) Length = 15 Score = 36.6 bits (83), Expect = 0.033 Identities = 15/15 (100%), Positives = 15/15 (100%) Frame = +2 Query: 401 NPNPVPIPLVDIDYL 445 NPNPVPIPLVDIDYL Sbjct: 1 NPNPVPIPLVDIDYL 15
>DRPD_CRAPL (P22241) Desiccation-related protein PCC27-45| Length = 151 Score = 36.6 bits (83), Expect = 0.033 Identities = 19/71 (26%), Positives = 34/71 (47%) Frame = +2 Query: 251 IDKVKDFIHDIGEKIEEAVGFGKPSADVARIHVPHIGLHRADLVVDVLIKNPNPVPIPLV 430 ++K K+F+ E+ KP A V + + +G H + + ++NP IP+ Sbjct: 5 MNKAKNFV------AEKVANVEKPKASVEDVDLKDVGRHGITYLTRICVENPYSASIPVG 58 Query: 431 DIDYLIDSDGR 463 +I Y + S GR Sbjct: 59 EIKYTLKSAGR 69
>LEA14_ARATH (O03983) Putative dessication-related protein LEA14| Length = 151 Score = 33.9 bits (76), Expect = 0.21 Identities = 18/72 (25%), Positives = 31/72 (43%) Frame = +2 Query: 251 IDKVKDFIHDIGEKIEEAVGFGKPSADVARIHVPHIGLHRADLVVDVLIKNPNPVPIPLV 430 +DK KDF+ D + KP V + + + + + V + NP IP+ Sbjct: 5 LDKAKDFVAD------KLTAIPKPEGSVTDVDLKDVNRDSVEYLAKVSVTNPYSHSIPIC 58 Query: 431 DIDYLIDSDGRK 466 +I + S GR+ Sbjct: 59 EISFTFHSAGRE 70
>DEF_SYNEL (Q8DIB4) Peptide deformylase (EC 3.5.1.88) (PDF) (Polypeptide| deformylase) Length = 188 Score = 32.7 bits (73), Expect = 0.47 Identities = 17/61 (27%), Positives = 33/61 (54%) Frame = +2 Query: 251 IDKVKDFIHDIGEKIEEAVGFGKPSADVARIHVPHIGLHRADLVVDVLIKNPNPVPIPLV 430 + KV D I DI K+ + + SAD + P +G+++ LV+D+ +P P+ ++ Sbjct: 34 VSKVDDSIRDIARKMLQTMY----SADGIGLAAPQVGINKQILVIDIHPDDPEAEPLVMI 89 Query: 431 D 433 + Sbjct: 90 N 90
>PICAL_HUMAN (Q13492) Phosphatidylinositol-binding clathrin assembly protein| (Clathrin assembly lymphoid myeloid leukemia protein) Length = 652 Score = 31.6 bits (70), Expect = 1.0 Identities = 15/38 (39%), Positives = 25/38 (65%) Frame = +2 Query: 38 ASPLSISAGRDLKQASSDLASQPAAMSSSSDNPNEVTD 151 ASP+S SAG + + D+ S P++ +S+S PN++ D Sbjct: 358 ASPVSTSAGGIMTAPAIDIFSTPSSSNSTSKLPNDLLD 395
>PICA_MOUSE (Q7M6Y3) Phosphatidylinositol-binding clathrin assembly protein| (Clathrin assembly lymphoid myeloid leukemia) (CALM) Length = 660 Score = 31.6 bits (70), Expect = 1.0 Identities = 15/38 (39%), Positives = 25/38 (65%) Frame = +2 Query: 38 ASPLSISAGRDLKQASSDLASQPAAMSSSSDNPNEVTD 151 ASP+S SAG + + D+ S P++ +S+S PN++ D Sbjct: 358 ASPVSTSAGGIMTAPAIDIFSTPSSSNSTSKLPNDLLD 395
>PICA_RAT (O55012) Phosphatidylinositol-binding clathrin assembly protein| (Clathrin assembly lymphoid myeloid leukemia protein) (rCALM) Length = 640 Score = 31.6 bits (70), Expect = 1.0 Identities = 15/38 (39%), Positives = 25/38 (65%) Frame = +2 Query: 38 ASPLSISAGRDLKQASSDLASQPAAMSSSSDNPNEVTD 151 ASP+S SAG + + D+ S P++ +S+S PN++ D Sbjct: 358 ASPVSTSAGGIMTAPAIDIFSTPSSSNSTSKLPNDLLD 395
>Y3593_NOCFA (Q5YTQ0) UPF0042 protein nfa35930| Length = 316 Score = 30.8 bits (68), Expect = 1.8 Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 6/62 (9%) Frame = +2 Query: 251 IDKVKDFIHDIGEKIEEAVGFGKPSADVARIHVPHIGLH-----RADLVVDV-LIKNPNP 412 ID + IH + K+EEA G G P+A ++ V G AD+V+DV + NP+ Sbjct: 163 IDTTELSIHQLHRKLEEAYGGGAPAA--LQLTVQSFGFKYGVPLDADMVLDVRFLPNPHW 220 Query: 413 VP 418 +P Sbjct: 221 IP 222
>FMT_MOUSE (Q9D799) Methionyl-tRNA formyltransferase, mitochondrial precursor| (EC 2.1.2.9) (MtFMT) Length = 386 Score = 29.3 bits (64), Expect = 5.2 Identities = 15/35 (42%), Positives = 20/35 (57%) Frame = -2 Query: 106 WLAGKIGACLLQIPAGGDGKWRCGNQMKSNKRGWR 2 WL G+ C Q PAG DGK G++++ K WR Sbjct: 11 WLMGRRPRCSCQAPAGFDGKDGRGSRVR-EKPPWR 44
>FMT_RAT (Q5I0C5) Methionyl-tRNA formyltransferase, mitochondrial precursor| (EC 2.1.2.9) (MtFMT) Length = 385 Score = 28.9 bits (63), Expect = 6.8 Identities = 15/35 (42%), Positives = 20/35 (57%) Frame = -2 Query: 106 WLAGKIGACLLQIPAGGDGKWRCGNQMKSNKRGWR 2 WLAG+ C Q PAG GK R ++++ K WR Sbjct: 11 WLAGRRPRCSCQSPAGFSGKDRRSSRVR-EKPPWR 44
>MNTH_LISMO (Q8Y773) Probable manganese transport protein mntH| Length = 448 Score = 28.9 bits (63), Expect = 6.8 Identities = 15/23 (65%), Positives = 16/23 (69%) Frame = +2 Query: 38 ASPLSISAGRDLKQASSDLASQP 106 AS L I GRDL QASSD S+P Sbjct: 93 ASKLGIVTGRDLAQASSDHFSKP 115
>MNTH_LISMF (Q71ZP6) Probable manganese transport protein mntH| Length = 448 Score = 28.9 bits (63), Expect = 6.8 Identities = 15/23 (65%), Positives = 16/23 (69%) Frame = +2 Query: 38 ASPLSISAGRDLKQASSDLASQP 106 AS L I GRDL QASSD S+P Sbjct: 93 ASKLGIVTGRDLAQASSDHFSKP 115
>MNTH_LISIN (Q92BT1) Probable manganese transport protein mntH| Length = 448 Score = 28.9 bits (63), Expect = 6.8 Identities = 15/23 (65%), Positives = 16/23 (69%) Frame = +2 Query: 38 ASPLSISAGRDLKQASSDLASQP 106 AS L I GRDL QASSD S+P Sbjct: 93 ASKLGIVTGRDLAQASSDHFSKP 115 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 39,984,365 Number of Sequences: 219361 Number of extensions: 644209 Number of successful extensions: 2580 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 2528 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2578 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3014947676 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
