ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bart51a01 |
|---|---|
| Clone Library Name | barley_pub |
>MDGA1_HUMAN (Q8NFP4) MAM domain-containing glycosylphosphatidylinositol anchor| protein 1 precursor (MAM domain-containing protein 3) (GPI and MAM protein) (Glycosylphosphatidylinositol-MAM) (GPIM) Length = 955 Score = 32.3 bits (72), Expect = 0.54 Identities = 28/98 (28%), Positives = 43/98 (43%), Gaps = 3/98 (3%) Frame = +1 Query: 94 NGLPIRVLSRRLVKASDPSIKPHVAAFNNLDLYPNSAQGSVTCV--YPKPPTGDFNSVVA 267 NG P R+ R LV +DP + ++ +DL+ S G+ C+ +P P D + V Sbjct: 374 NGKPARMSKRLLVTRNDPELPAVTSSLELIDLH-FSDYGTYLCMASFPGAPVPDLSVEVN 432 Query: 268 AFDAHLPSFLNYFYPMAGRIAVNPSSGMP-ELHCFNQG 378 +P ++ GR V G P EL C +G Sbjct: 433 ISSETVPPTISV---PKGRAVVTVREGSPAELQCEVRG 467
>GID_GEOSL (Q74A44) tRNA uridine 5-carboxymethylaminomethyl modification| enzyme gid Length = 434 Score = 29.3 bits (64), Expect = 4.5 Identities = 14/33 (42%), Positives = 19/33 (57%) Frame = +1 Query: 85 SAGNGLPIRVLSRRLVKASDPSIKPHVAAFNNL 183 SAG+G + S RLV+ DP++ P V A L Sbjct: 349 SAGSGFLAGINSARLVRGEDPAVPPPVTALGAL 381
>TSCC1_MOUSE (Q8K0G5) Protein TSSC1| Length = 386 Score = 29.3 bits (64), Expect = 4.5 Identities = 14/30 (46%), Positives = 20/30 (66%) Frame = +1 Query: 196 NSAQGSVTCVYPKPPTGDFNSVVAAFDAHL 285 NSAQG+V CV + P GD V++ D+H+ Sbjct: 131 NSAQGNVACVVWE-PMGDGKKVISLADSHI 159
>ATS16_HUMAN (Q8TE57) ADAMTS-16 precursor (EC 3.4.24.-) (A disintegrin and| metalloproteinase with thrombospondin motifs 16) (ADAM-TS 16) (ADAM-TS16) Length = 1224 Score = 29.3 bits (64), Expect = 4.5 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%) Frame = +2 Query: 326 SRSIRAPACPSSTASTKERSSTWETP-AWSCGPW 424 S + A CP S+++ ++ P AWS GPW Sbjct: 962 SEPVPASLCPQPAPSSRQACNSQSCPPAWSAGPW 995
>STRB2_STRGR (P29780) Putative inosamine-phosphate amidinotransferase 2 (EC| 2.1.4.2) (Inosamine-phosphate amidinotransferase II) (Aminocyclitol amidinotransferase) (ADT) Length = 349 Score = 28.9 bits (63), Expect = 5.9 Identities = 18/37 (48%), Positives = 23/37 (62%), Gaps = 4/37 (10%) Frame = -3 Query: 228 VDARHRPLCRV----GVEVQVIEGGHMRLDGGVRGFH 130 VD+RHR L RV GV+V ++ H R+ GG GFH Sbjct: 298 VDSRHRELMRVLERHGVDVLPLKLTHARMLGG--GFH 332
>PCIF1_MOUSE (P59114) Phosphorylated CTD-interacting factor 1| Length = 706 Score = 28.5 bits (62), Expect = 7.7 Identities = 12/38 (31%), Positives = 18/38 (47%) Frame = -1 Query: 431 PQSRVHSSTPASPTLSSVPWLKQWSSGMPELGLTAMRP 318 P + S P+SP++ P LK W S + +RP Sbjct: 133 PVTPTSQSVPSSPSIPGTPTLKIWGSSTEDKQAALLRP 170
>YPU3_RHOCA (P26159) Hypothetical 5.8 kDa protein in puhA 5'region (ORF55)| Length = 55 Score = 28.5 bits (62), Expect = 7.7 Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 7/41 (17%) Frame = +2 Query: 11 SLPDHLRPNSLGALTRNQWVC-------LSARVQAMGCPSG 112 +L H+RPNS R W C ++ R+ AMG G Sbjct: 3 ALKSHVRPNSAAPARRQPWPCGSCVTAPVAVRIGAMGASPG 43
>SYI_ECOLI (P00956) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA| ligase) (IleRS) Length = 937 Score = 28.5 bits (62), Expect = 7.7 Identities = 12/31 (38%), Positives = 15/31 (48%) Frame = -3 Query: 198 VGVEVQVIEGGHMRLDGGVRGFHQPPAQHPD 106 +G +V I G H+ LD G H P PD Sbjct: 310 MGFDVPAILGDHVTLDAGTGAVHTAPGHGPD 340
>SYI_SALTY (Q8ZRZ0) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA| ligase) (IleRS) Length = 944 Score = 28.5 bits (62), Expect = 7.7 Identities = 12/31 (38%), Positives = 15/31 (48%) Frame = -3 Query: 198 VGVEVQVIEGGHMRLDGGVRGFHQPPAQHPD 106 +G +V I G H+ LD G H P PD Sbjct: 311 MGFDVPAILGDHVTLDAGTGAVHTAPGHGPD 341
>SYI_SALTI (Q8Z9N2) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA| ligase) (IleRS) Length = 944 Score = 28.5 bits (62), Expect = 7.7 Identities = 12/31 (38%), Positives = 15/31 (48%) Frame = -3 Query: 198 VGVEVQVIEGGHMRLDGGVRGFHQPPAQHPD 106 +G +V I G H+ LD G H P PD Sbjct: 311 MGFDVPAILGDHVTLDAGTGAVHTAPGHGPD 341
>SYI_SALPA (Q5PDL9) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA| ligase) (IleRS) Length = 944 Score = 28.5 bits (62), Expect = 7.7 Identities = 12/31 (38%), Positives = 15/31 (48%) Frame = -3 Query: 198 VGVEVQVIEGGHMRLDGGVRGFHQPPAQHPD 106 +G +V I G H+ LD G H P PD Sbjct: 311 MGFDVPAILGDHVTLDAGTGAVHTAPGHGPD 341
>SYI_SALCH (Q57TL5) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA| ligase) (IleRS) Length = 944 Score = 28.5 bits (62), Expect = 7.7 Identities = 12/31 (38%), Positives = 15/31 (48%) Frame = -3 Query: 198 VGVEVQVIEGGHMRLDGGVRGFHQPPAQHPD 106 +G +V I G H+ LD G H P PD Sbjct: 311 MGFDVPAILGDHVTLDAGTGAVHTAPGHGPD 341
>SYI_YERPS (Q66ES4) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA| ligase) (IleRS) Length = 938 Score = 28.5 bits (62), Expect = 7.7 Identities = 12/31 (38%), Positives = 15/31 (48%) Frame = -3 Query: 198 VGVEVQVIEGGHMRLDGGVRGFHQPPAQHPD 106 +G +V I G H+ LD G H P PD Sbjct: 311 MGFDVPAILGDHVTLDAGTGAVHTAPGHGPD 341
>SYI_YERPE (Q8ZIM0) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA| ligase) (IleRS) Length = 938 Score = 28.5 bits (62), Expect = 7.7 Identities = 12/31 (38%), Positives = 15/31 (48%) Frame = -3 Query: 198 VGVEVQVIEGGHMRLDGGVRGFHQPPAQHPD 106 +G +V I G H+ LD G H P PD Sbjct: 311 MGFDVPAILGDHVTLDAGTGAVHTAPGHGPD 341
>SYI_SHISS (Q3Z5Y4) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA| ligase) (IleRS) Length = 938 Score = 28.5 bits (62), Expect = 7.7 Identities = 12/31 (38%), Positives = 15/31 (48%) Frame = -3 Query: 198 VGVEVQVIEGGHMRLDGGVRGFHQPPAQHPD 106 +G +V I G H+ LD G H P PD Sbjct: 311 MGFDVPAILGDHVTLDAGTGAVHTAPGHGPD 341
>SYI_SHIFL (Q83MH2) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA| ligase) (IleRS) Length = 938 Score = 28.5 bits (62), Expect = 7.7 Identities = 12/31 (38%), Positives = 15/31 (48%) Frame = -3 Query: 198 VGVEVQVIEGGHMRLDGGVRGFHQPPAQHPD 106 +G +V I G H+ LD G H P PD Sbjct: 311 MGFDVPAILGDHVTLDAGTGAVHTAPGHGPD 341
>SYI_ECO57 (Q8XA49) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA| ligase) (IleRS) Length = 938 Score = 28.5 bits (62), Expect = 7.7 Identities = 12/31 (38%), Positives = 15/31 (48%) Frame = -3 Query: 198 VGVEVQVIEGGHMRLDGGVRGFHQPPAQHPD 106 +G +V I G H+ LD G H P PD Sbjct: 311 MGFDVPAILGDHVTLDAGTGAVHTAPGHGPD 341 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 65,688,770 Number of Sequences: 219361 Number of extensions: 1344814 Number of successful extensions: 3653 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 3529 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3652 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2628831825 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
