ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart50h12 |
|---|---|
| Clone Library Name | barley_pub |
>J1L_HCMVA (P17143) Hypothetical protein J1L| Length = 309 Score = 31.2 bits (69), Expect = 0.63 Identities = 16/37 (43%), Positives = 21/37 (56%) Frame = -2 Query: 238 AGTAPCAASRPCKPVPRSQASPPREALPLHKRMPFQS 128 A TAP A ++P P P +PP A P H+R P +S Sbjct: 24 ARTAP-APAQPPSPAPTPSRTPPVSATPRHRRRPERS 59
>L_VSVJO (P16379) Large structural protein (L protein) (Transcriptase)| (Replicase) [Includes: RNA-directed RNA polymerase (EC 2.7.7.48); mRNA (guanine-N(7)-)-methyltransferase (EC 2.1.1.56); mRNA guanylyltransferase (EC 2.7.7.-)] Length = 2109 Score = 30.4 bits (67), Expect = 1.1 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 2/37 (5%) Frame = +3 Query: 36 HRVLPRSLISLCGRLDLDTLCSST--TATAHKVLWNG 140 H +SLI GR DL T+ + T +T H+V WNG Sbjct: 639 HEFFEKSLIYYNGRPDLMTIRNGTLCNSTKHRVCWNG 675
>CITG_ERWCT (Q6D425) 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase| (EC 2.7.8.25) (2-(5''-triphosphoribosyl)-3'-dephospho-CoA synthase) Length = 301 Score = 29.6 bits (65), Expect = 1.8 Identities = 17/56 (30%), Positives = 25/56 (44%) Frame = +3 Query: 75 RLDLDTLCSSTTATAHKVLWNGIRLCKGSASRGGDACDRGTGLHGREAAHGAVPAG 242 R+ +LC S A H ++ N + C G+A+ G R HG A G +G Sbjct: 146 RVTQRSLCDSVAAMCHDLVRNELETCSGAATAGEHLYLR----HGLTGARGEAASG 197
>HCK_MACFA (Q95M30) Tyrosine-protein kinase HCK (EC 2.7.10.2) (p56-HCK)| (Hemopoietic cell kinase) Length = 503 Score = 29.6 bits (65), Expect = 1.8 Identities = 12/31 (38%), Positives = 19/31 (61%) Frame = -2 Query: 232 TAPCAASRPCKPVPRSQASPPREALPLHKRM 140 + PC +S+P KP + PRE+L L K++ Sbjct: 215 SVPCVSSKPQKPWEKDAWEIPRESLKLEKKL 245
>YHU3_YEAST (P38844) Protein YHR143W precursor| Length = 325 Score = 29.6 bits (65), Expect = 1.8 Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 4/89 (4%) Frame = -1 Query: 305 TDTAMSPWST----APLW*ESMSAGSGRYSSMRRLAPMQTCAAVASITAARSTAFAQTNA 138 ++T+ S +ST APL S S+ S ++++ LAP + + + +T A S++ T+A Sbjct: 177 SETSSSSFSTSSSSAPLSLTSSSSSSSSFATIITLAPSSSKSGNSQLTLASSSS---TSA 233 Query: 137 IPEHFVGCGCGRRTECV*IKPTTETDERA 51 + G R T + + +T RA Sbjct: 234 VESSQTGSTIARTTSTLVPSSSVDTTSRA 262
>TNR3_HUMAN (P36941) Tumor necrosis factor receptor superfamily member 3| precursor (Lymphotoxin-beta receptor) (Tumor necrosis factor receptor 2-related protein) (Tumor necrosis factor C receptor) Length = 435 Score = 29.6 bits (65), Expect = 1.8 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 1/51 (1%) Frame = +3 Query: 6 YWTSQHRPHIHRVLPRSLISL-CGRLDLDTLCSSTTATAHKVLWNGIRLCK 155 Y+ QHR R P + +S C R+ DT+C++ ++ WN + +C+ Sbjct: 50 YYEPQHRICCSRCPPGTYVSAKCSRIR-DTVCATCAENSYNEHWNYLTICQ 99
>FXL16_RAT (Q5MJ12) F-box/LRR-repeat protein 16 (F-box and leucine-rich repeat| protein 16) (Spinal cord injury and regeneration-related protein 1) Length = 479 Score = 29.3 bits (64), Expect = 2.4 Identities = 12/27 (44%), Positives = 15/27 (55%) Frame = -2 Query: 226 PCAASRPCKPVPRSQASPPREALPLHK 146 P A +RPC+P P PP A PL + Sbjct: 40 PAAKNRPCQPPPPPTLPPPSLATPLSR 66
>HCK_HUMAN (P08631) Tyrosine-protein kinase HCK (EC 2.7.10.2)| (p59-HCK/p60-HCK) (Hemopoietic cell kinase) Length = 525 Score = 29.3 bits (64), Expect = 2.4 Identities = 12/31 (38%), Positives = 19/31 (61%) Frame = -2 Query: 232 TAPCAASRPCKPVPRSQASPPREALPLHKRM 140 + PC +S+P KP + PRE+L L K++ Sbjct: 237 SVPCMSSKPQKPWEKDAWEIPRESLKLEKKL 267
>ZDHC1_HUMAN (Q8WTX9) Probable palmitoyltransferase ZDHHC1 (EC 2.3.1.-) (Zinc| finger DHHC domain-containing protein 1) (DHHC-1) (Zinc finger protein 377) (DHHC-domain-containing cysteine-rich protein 1) Length = 485 Score = 29.3 bits (64), Expect = 2.4 Identities = 17/47 (36%), Positives = 20/47 (42%), Gaps = 9/47 (19%) Frame = -1 Query: 377 SAVSERRKSRITAFCAGLKLPYQRTDTAMSPWS---------TAPLW 264 +A + RR R A C L LP T SPW+ APLW Sbjct: 417 AAPARRRIPRTPALCTPLALPAPTTRRRQSPWTRFQWRRRAWAAPLW 463
>L_VSVJH (P13615) Large structural protein (L protein) (Transcriptase)| (Replicase) [Includes: RNA-directed RNA polymerase (EC 2.7.7.48); mRNA (guanine-N(7)-)-methyltransferase (EC 2.1.1.56); mRNA guanylyltransferase (EC 2.7.7.-)] Length = 2109 Score = 28.9 bits (63), Expect = 3.1 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 2/38 (5%) Frame = +3 Query: 33 IHRVLPRSLISLCGRLDLDTLCSST--TATAHKVLWNG 140 IH +SLI G DL T+ + T +T H+V WNG Sbjct: 638 IHEFFEKSLIYYNGLPDLLTIRNGTLCNSTKHRVCWNG 675
>PRG4_HUMAN (Q92954) Proteoglycan-4 precursor (Lubricin) (Megakaryocyte| stimulating factor) (Superficial zone proteoglycan) [Contains: Proteoglycan-4 C-terminal part] Length = 1404 Score = 28.1 bits (61), Expect = 5.3 Identities = 10/21 (47%), Positives = 15/21 (71%) Frame = +1 Query: 256 LSYHNGAVLHGDIAVSVLWYG 318 L+Y + VLH ++ VS+LW G Sbjct: 1325 LAYQDKGVLHNEVKVSILWRG 1345
>IKBB_HUMAN (Q15653) NF-kappa-B inhibitor beta (NF-kappa-BIB) (I-kappa-B-beta)| (IkappaBbeta) (IKB-beta) (IKB-B) (Thyroid receptor-interacting protein 9) (TR-interacting protein 9) Length = 356 Score = 28.1 bits (61), Expect = 5.3 Identities = 16/38 (42%), Positives = 19/38 (50%) Frame = +3 Query: 150 CKGSASRGGDACDRGTGLHGREAAHGAVPAGPGRHALL 263 C G A+ + CD G G G +A A P GPG A L Sbjct: 6 CLGKAADADEWCDSGLGSLGPDA---AAPGGPGLGAEL 40
>FXL16_HUMAN (Q8N461) F-box/LRR-repeat protein 16 (F-box and leucine-rich repeat| protein 16) Length = 479 Score = 27.7 bits (60), Expect = 6.9 Identities = 11/27 (40%), Positives = 14/27 (51%) Frame = -2 Query: 226 PCAASRPCKPVPRSQASPPREALPLHK 146 P +RPC+P P PP A PL + Sbjct: 40 PATKNRPCQPPPPPTLPPPSLAAPLSR 66
>TGB2_NMV (P15097) TGB2 protein (Triple gene block 2 protein) (TGBp2) (14 kDa| protein) (ORF 3 protein) Length = 130 Score = 27.7 bits (60), Expect = 6.9 Identities = 19/71 (26%), Positives = 27/71 (38%) Frame = +3 Query: 24 RPHIHRVLPRSLISLCGRLDLDTLCSSTTATAHKVLWNGIRLCKGSASRGGDACDRGTGL 203 RPH +LC L L L + T A + +C +S+G G Sbjct: 62 RPHSSTSTNHKYTALCAVLTLSLLIFAQTRLAAGNRITSVSICHHCSSQG----SLSGGN 117 Query: 204 HGREAAHGAVP 236 HGR + H +P Sbjct: 118 HGRVSGHSELP 128
>PYRH_MYCTU (P65929) Uridylate kinase (EC 2.7.4.-) (UK) (Uridine monophosphate| kinase) (UMP kinase) Length = 261 Score = 27.7 bits (60), Expect = 6.9 Identities = 13/26 (50%), Positives = 15/26 (57%) Frame = -1 Query: 374 AVSERRKSRITAFCAGLKLPYQRTDT 297 AV K R+ F AG+ LPY TDT Sbjct: 142 AVRHLEKGRVVIFGAGMGLPYFSTDT 167
>PYRH_MYCBO (P65930) Uridylate kinase (EC 2.7.4.-) (UK) (Uridine monophosphate| kinase) (UMP kinase) Length = 261 Score = 27.7 bits (60), Expect = 6.9 Identities = 13/26 (50%), Positives = 15/26 (57%) Frame = -1 Query: 374 AVSERRKSRITAFCAGLKLPYQRTDT 297 AV K R+ F AG+ LPY TDT Sbjct: 142 AVRHLEKGRVVIFGAGMGLPYFSTDT 167
>PYRH_MYCLE (O33045) Uridylate kinase (EC 2.7.4.-) (UK) (Uridine monophosphate| kinase) (UMP kinase) Length = 255 Score = 27.7 bits (60), Expect = 6.9 Identities = 13/26 (50%), Positives = 15/26 (57%) Frame = -1 Query: 374 AVSERRKSRITAFCAGLKLPYQRTDT 297 AV K R+ F AG+ LPY TDT Sbjct: 136 AVRHLEKGRVVIFGAGMGLPYFSTDT 161
>PYRH_STRP8 (P65940) Uridylate kinase (EC 2.7.4.-) (UK) (Uridine monophosphate| kinase) (UMP kinase) Length = 242 Score = 27.3 bits (59), Expect = 9.0 Identities = 13/28 (46%), Positives = 16/28 (57%) Frame = -1 Query: 380 GSAVSERRKSRITAFCAGLKLPYQRTDT 297 G A+ K+RI F AG+ PY TDT Sbjct: 116 GRALRHLEKNRIVVFGAGIGSPYFSTDT 143
>PYRH_STRP6 (Q5XDH4) Uridylate kinase (EC 2.7.4.-) (UK) (Uridine monophosphate| kinase) (UMP kinase) Length = 242 Score = 27.3 bits (59), Expect = 9.0 Identities = 13/28 (46%), Positives = 16/28 (57%) Frame = -1 Query: 380 GSAVSERRKSRITAFCAGLKLPYQRTDT 297 G A+ K+RI F AG+ PY TDT Sbjct: 116 GRALRHLEKNRIVVFGAGIGSPYFSTDT 143
>PYRH_STRP3 (P65939) Uridylate kinase (EC 2.7.4.-) (UK) (Uridine monophosphate| kinase) (UMP kinase) Length = 242 Score = 27.3 bits (59), Expect = 9.0 Identities = 13/28 (46%), Positives = 16/28 (57%) Frame = -1 Query: 380 GSAVSERRKSRITAFCAGLKLPYQRTDT 297 G A+ K+RI F AG+ PY TDT Sbjct: 116 GRALRHLEKNRIVVFGAGIGSPYFSTDT 143
>PYRH_STRP1 (P65938) Uridylate kinase (EC 2.7.4.-) (UK) (Uridine monophosphate| kinase) (UMP kinase) Length = 242 Score = 27.3 bits (59), Expect = 9.0 Identities = 13/28 (46%), Positives = 16/28 (57%) Frame = -1 Query: 380 GSAVSERRKSRITAFCAGLKLPYQRTDT 297 G A+ K+RI F AG+ PY TDT Sbjct: 116 GRALRHLEKNRIVVFGAGIGSPYFSTDT 143
>K1M1_SHEEP (P02534) Keratin, type I microfibrillar 48 kDa, component 8C-1| (Low-sulfur keratin) Length = 412 Score = 27.3 bits (59), Expect = 9.0 Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 1/21 (4%) Frame = -2 Query: 232 TAPCAASRPCKP-VPRSQASP 173 ++PCA + PC P VPRS+ P Sbjct: 386 SSPCAPAAPCTPCVPRSRCGP 406
>GRPE2_STRAW (Q826F5) Protein grpE 2 (HSP-70 cofactor 2)| Length = 203 Score = 27.3 bits (59), Expect = 9.0 Identities = 12/22 (54%), Positives = 13/22 (59%) Frame = -2 Query: 220 AASRPCKPVPRSQASPPREALP 155 AAS P +PVP PPR LP Sbjct: 11 AASDPVEPVPEGAGRPPRGDLP 32
>TERT_MOUSE (O70372) Telomerase reverse transcriptase (EC 2.7.7.49) (Telomerase| catalytic subunit) Length = 1122 Score = 27.3 bits (59), Expect = 9.0 Identities = 11/26 (42%), Positives = 14/26 (53%) Frame = -2 Query: 232 TAPCAASRPCKPVPRSQASPPREALP 155 + P A C PVPR + P R+ LP Sbjct: 240 SVPSAKKARCYPVPRVEEGPHRQVLP 265
>MDTA_ERWCT (Q6D2B2) Multidrug resistance protein mdtA precursor (Multidrug| transporter mdtA) Length = 411 Score = 27.3 bits (59), Expect = 9.0 Identities = 15/50 (30%), Positives = 24/50 (48%) Frame = -1 Query: 260 ESMSAGSGRYSSMRRLAPMQTCAAVASITAARSTAFAQTNAIPEHFVGCG 111 E+ +G GR ++MR LAP+Q A Q+ ++P + G G Sbjct: 48 ENSGSGGGRRAAMRTLAPVQ-------------AALTQSASVPHYLSGLG 84
>DRD3_RAT (P19020) D(3) dopamine receptor| Length = 446 Score = 27.3 bits (59), Expect = 9.0 Identities = 14/39 (35%), Positives = 20/39 (51%) Frame = -1 Query: 317 PYQRTDTAMSPWSTAPLW*ESMSAGSGRYSSMRRLAPMQ 201 P +RT ++SP L E +GR S+ RL P+Q Sbjct: 324 PVERTRNSLSPTMAPKLSLEVRKLSNGRLSTSLRLGPLQ 362
>UBE13_WHEAT (P31252) Ubiquitin-activating enzyme E1 3| Length = 1053 Score = 27.3 bits (59), Expect = 9.0 Identities = 14/26 (53%), Positives = 15/26 (57%) Frame = +3 Query: 168 RGGDACDRGTGLHGREAAHGAVPAGP 245 RGGDA G+G AA GAV A P Sbjct: 18 RGGDARGPGSGRRRARAAAGAVTAAP 43
>SURE_RHOGE (Q9JP92) 5'-nucleotidase surE (EC 3.1.3.5) (Nucleoside| 5'-monophosphate phosphohydrolase) Length = 255 Score = 27.3 bits (59), Expect = 9.0 Identities = 23/81 (28%), Positives = 29/81 (35%), Gaps = 5/81 (6%) Frame = +3 Query: 45 LPRSLISLCGRLDLDTLCSSTTATAHKVLWNGIRLCKGSASRGGDACDRGTGLHGREAAH 224 LPR + L R + + T + W G GDA D G G AH Sbjct: 175 LPRLVTRLGRRHASEPVIRQTNPRGEPIYWIG---------PAGDARDAGEGTDFHAVAH 225 Query: 225 GAVPAGPGR-----HALLPQW 272 GAV P + HA+ W Sbjct: 226 GAVSITPLQVDLTDHAMRGAW 246 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 52,510,959 Number of Sequences: 219361 Number of extensions: 1057516 Number of successful extensions: 3739 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 3579 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3738 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 1375720320 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
