ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart50h12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_467876.1| Oryza sativa (japonica cultivar-group), mRNA 141 2e-30
2dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 141 2e-30
3dbj|AP004814.3| Oryza sativa (japonica cultivar-group) genomic D... 141 2e-30
4dbj|AP005012.3| Oryza sativa (japonica cultivar-group) genomic D... 141 2e-30
5dbj|AK062900.1| Oryza sativa (japonica cultivar-group) cDNA clon... 141 2e-30
6dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 82 2e-12
7dbj|AP003488.3| Oryza sativa (japonica cultivar-group) genomic D... 82 2e-12
8gb|AY570727.1| Oryza sativa (japonica cultivar-group) putative p... 82 2e-12
9dbj|AK099621.1| Oryza sativa (japonica cultivar-group) cDNA clon... 80 6e-12
10dbj|AK061401.1| Oryza sativa (japonica cultivar-group) cDNA clon... 76 9e-11
11ref|XM_467877.1| Oryza sativa (japonica cultivar-group), mRNA 72 1e-09
12dbj|AK063605.1| Oryza sativa (japonica cultivar-group) cDNA clon... 72 1e-09
13dbj|AP004727.2| Oryza sativa (japonica cultivar-group) genomic D... 62 1e-06
14ref|XM_506983.1| PREDICTED Oryza sativa (japonica cultivar-group... 56 9e-05
15ref|XM_467873.1| Oryza sativa (japonica cultivar-group), mRNA 56 9e-05
16ref|XM_467872.1| Oryza sativa (japonica cultivar-group), mRNA 56 9e-05
17dbj|AK119695.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 9e-05
18dbj|AK101655.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 9e-05
19dbj|AK063454.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 9e-05
20gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete ... 42 1.3
21emb|AL391744.1|SPAC17D4 S.pombe chromosome I cosmid c17D4 42 1.3
22ref|NM_001020121.1| Schizosaccharomyces pombe 972h- hypothetical... 42 1.3
23dbj|AB001739.1| Schizosaccharomyces pombe DNA for SNA41, partial... 42 1.3
24gb|AE017344.1| Cryptococcus neoformans var. neoformans JEC21 chr... 40 5.2
25gb|AE017343.1| Cryptococcus neoformans var. neoformans JEC21 chr... 40 5.2
26ref|XM_569506.1| Cryptococcus neoformans var. neoformans JEC21 h... 40 5.2
27ref|XM_570056.1| Cryptococcus neoformans var. neoformans JEC21 g... 40 5.2
28ref|XM_570057.1| Cryptococcus neoformans var. neoformans JEC21 g... 40 5.2
29emb|AL732578.5| Human DNA sequence from clone RP11-421K1 on chro... 40 5.2
30gb|AC125787.2| Homo sapiens chromosome 5 clone CTD-2137I20, comp... 40 5.2
31emb|BX640441.1| Bordetella bronchiseptica strain RB50, complete ... 40 5.2
32emb|BX640426.1| Bordetella parapertussis strain 12822, complete ... 40 5.2
33emb|BX640415.1| Bordetella pertussis strain Tohama I, complete g... 40 5.2
34emb|AL939126.1|SCO939126 Streptomyces coelicolor A3(2) complete ... 40 5.2
35emb|AL591429.9| Mouse DNA sequence from clone RP23-307I20 on chr... 40 5.2
36dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 40 5.2

>ref|XM_467876.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1193

 Score =  141 bits (71), Expect = 2e-30
 Identities = 152/179 (84%)
 Strand = Plus / Plus

                                                                       
Query: 191 cggcacaggtttgcatgggcgcgaggcggcgcatggagctgtaccggccggacccggccg 250
           |||| ||||| | |||||| || |||||||||||||||||||||  ||| |||||||| |
Sbjct: 166 cggctcaggtatccatgggtgcaaggcggcgcatggagctgtacaagccagacccggctg 225

                                                                       
Query: 251 acatgctctcctaccacaatggcgccgtgctccacggcgacatcgccgtgtccgtcctct 310
           ||||||||||||||||||  |||||||||||||| ||| ||||| | |||||| ||  ||
Sbjct: 226 acatgctctcctaccacagcggcgccgtgctccagggcaacatcccggtgtccatctact 285

                                                                      
Query: 311 ggtacggcaactttaagccggcgcagaaggcggtgatcctcgacttcctcctctcgctc 369
           |||||||||| || | ||||||||||||| || |  || ||||||||||||| ||||||
Sbjct: 286 ggtacggcaagttcacgccggcgcagaagtcgatactcttcgacttcctcctgtcgctc 344



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  141 bits (71), Expect = 2e-30
 Identities = 152/179 (84%)
 Strand = Plus / Minus

                                                                            
Query: 191      cggcacaggtttgcatgggcgcgaggcggcgcatggagctgtaccggccggacccggccg 250
                |||| ||||| | |||||| || |||||||||||||||||||||  ||| |||||||| |
Sbjct: 31854681 cggctcaggtatccatgggtgcaaggcggcgcatggagctgtacaagccagacccggctg 31854622

                                                                            
Query: 251      acatgctctcctaccacaatggcgccgtgctccacggcgacatcgccgtgtccgtcctct 310
                ||||||||||||||||||  |||||||||||||| ||| ||||| | |||||| ||  ||
Sbjct: 31854621 acatgctctcctaccacagcggcgccgtgctccagggcaacatcccggtgtccatctact 31854562

                                                                           
Query: 311      ggtacggcaactttaagccggcgcagaaggcggtgatcctcgacttcctcctctcgctc 369
                |||||||||| || | ||||||||||||| || |  || ||||||||||||| ||||||
Sbjct: 31854561 ggtacggcaagttcacgccggcgcagaagtcgatactcttcgacttcctcctgtcgctc 31854503



 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 75/88 (85%)
 Strand = Plus / Minus

                                                                            
Query: 286      ggcgacatcgccgtgtccgtcctctggtacggcaactttaagccggcgcagaaggcggtg 345
                ||||||||| ||||||| ||| |||||||||||  ||| | ||||||||||||||| || 
Sbjct: 31860010 ggcgacatccccgtgtcggtcgtctggtacggccgcttcacgccggcgcagaaggccgtc 31859951

                                            
Query: 346      atcctcgacttcctcctctcgctcaccg 373
                 ||  |||||||||||||| ||||||||
Sbjct: 31859950 gtctccgacttcctcctcttgctcaccg 31859923



 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 73/88 (82%)
 Strand = Plus / Minus

                                                                            
Query: 286      ggcgacatcgccgtgtccgtcctctggtacggcaactttaagccggcgcagaaggcggtg 345
                ||||||||| | |||||| |||||||||||||||| || | |||| |||||| | || | 
Sbjct: 31843510 ggcgacatcccggtgtccatcctctggtacggcaaattcacgccgacgcagatgtcgatc 31843451

                                            
Query: 346      atcctcgacttcctcctctcgctcaccg 373
                |||  ||||||| || ||||||||||||
Sbjct: 31843450 atcgccgacttcgtcgtctcgctcaccg 31843423



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>dbj|AP004814.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0471A11
          Length = 157740

 Score =  141 bits (71), Expect = 2e-30
 Identities = 152/179 (84%)
 Strand = Plus / Minus

                                                                         
Query: 191   cggcacaggtttgcatgggcgcgaggcggcgcatggagctgtaccggccggacccggccg 250
             |||| ||||| | |||||| || |||||||||||||||||||||  ||| |||||||| |
Sbjct: 15682 cggctcaggtatccatgggtgcaaggcggcgcatggagctgtacaagccagacccggctg 15623

                                                                         
Query: 251   acatgctctcctaccacaatggcgccgtgctccacggcgacatcgccgtgtccgtcctct 310
             ||||||||||||||||||  |||||||||||||| ||| ||||| | |||||| ||  ||
Sbjct: 15622 acatgctctcctaccacagcggcgccgtgctccagggcaacatcccggtgtccatctact 15563

                                                                        
Query: 311   ggtacggcaactttaagccggcgcagaaggcggtgatcctcgacttcctcctctcgctc 369
             |||||||||| || | ||||||||||||| || |  || ||||||||||||| ||||||
Sbjct: 15562 ggtacggcaagttcacgccggcgcagaagtcgatactcttcgacttcctcctgtcgctc 15504



 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 75/88 (85%)
 Strand = Plus / Minus

                                                                         
Query: 286   ggcgacatcgccgtgtccgtcctctggtacggcaactttaagccggcgcagaaggcggtg 345
             ||||||||| ||||||| ||| |||||||||||  ||| | ||||||||||||||| || 
Sbjct: 21011 ggcgacatccccgtgtcggtcgtctggtacggccgcttcacgccggcgcagaaggccgtc 20952

                                         
Query: 346   atcctcgacttcctcctctcgctcaccg 373
              ||  |||||||||||||| ||||||||
Sbjct: 20951 gtctccgacttcctcctcttgctcaccg 20924



 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 73/88 (82%)
 Strand = Plus / Minus

                                                                        
Query: 286  ggcgacatcgccgtgtccgtcctctggtacggcaactttaagccggcgcagaaggcggtg 345
            ||||||||| | |||||| |||||||||||||||| || | |||| |||||| | || | 
Sbjct: 4511 ggcgacatcccggtgtccatcctctggtacggcaaattcacgccgacgcagatgtcgatc 4452

                                        
Query: 346  atcctcgacttcctcctctcgctcaccg 373
            |||  ||||||| || ||||||||||||
Sbjct: 4451 atcgccgacttcgtcgtctcgctcaccg 4424



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>dbj|AP005012.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0627E03
          Length = 159861

 Score =  141 bits (71), Expect = 2e-30
 Identities = 152/179 (84%)
 Strand = Plus / Minus

                                                                          
Query: 191    cggcacaggtttgcatgggcgcgaggcggcgcatggagctgtaccggccggacccggccg 250
              |||| ||||| | |||||| || |||||||||||||||||||||  ||| |||||||| |
Sbjct: 150479 cggctcaggtatccatgggtgcaaggcggcgcatggagctgtacaagccagacccggctg 150420

                                                                          
Query: 251    acatgctctcctaccacaatggcgccgtgctccacggcgacatcgccgtgtccgtcctct 310
              ||||||||||||||||||  |||||||||||||| ||| ||||| | |||||| ||  ||
Sbjct: 150419 acatgctctcctaccacagcggcgccgtgctccagggcaacatcccggtgtccatctact 150360

                                                                         
Query: 311    ggtacggcaactttaagccggcgcagaaggcggtgatcctcgacttcctcctctcgctc 369
              |||||||||| || | ||||||||||||| || |  || ||||||||||||| ||||||
Sbjct: 150359 ggtacggcaagttcacgccggcgcagaagtcgatactcttcgacttcctcctgtcgctc 150301



 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 75/88 (85%)
 Strand = Plus / Minus

                                                                          
Query: 286    ggcgacatcgccgtgtccgtcctctggtacggcaactttaagccggcgcagaaggcggtg 345
              ||||||||| ||||||| ||| |||||||||||  ||| | ||||||||||||||| || 
Sbjct: 155808 ggcgacatccccgtgtcggtcgtctggtacggccgcttcacgccggcgcagaaggccgtc 155749

                                          
Query: 346    atcctcgacttcctcctctcgctcaccg 373
               ||  |||||||||||||| ||||||||
Sbjct: 155748 gtctccgacttcctcctcttgctcaccg 155721



 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 73/88 (82%)
 Strand = Plus / Minus

                                                                          
Query: 286    ggcgacatcgccgtgtccgtcctctggtacggcaactttaagccggcgcagaaggcggtg 345
              ||||||||| | |||||| |||||||||||||||| || | |||| |||||| | || | 
Sbjct: 139308 ggcgacatcccggtgtccatcctctggtacggcaaattcacgccgacgcagatgtcgatc 139249

                                          
Query: 346    atcctcgacttcctcctctcgctcaccg 373
              |||  ||||||| || ||||||||||||
Sbjct: 139248 atcgccgacttcgtcgtctcgctcaccg 139221



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>dbj|AK062900.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-108-F03, full
           insert sequence
          Length = 1193

 Score =  141 bits (71), Expect = 2e-30
 Identities = 152/179 (84%)
 Strand = Plus / Plus

                                                                       
Query: 191 cggcacaggtttgcatgggcgcgaggcggcgcatggagctgtaccggccggacccggccg 250
           |||| ||||| | |||||| || |||||||||||||||||||||  ||| |||||||| |
Sbjct: 166 cggctcaggtatccatgggtgcaaggcggcgcatggagctgtacaagccagacccggctg 225

                                                                       
Query: 251 acatgctctcctaccacaatggcgccgtgctccacggcgacatcgccgtgtccgtcctct 310
           ||||||||||||||||||  |||||||||||||| ||| ||||| | |||||| ||  ||
Sbjct: 226 acatgctctcctaccacagcggcgccgtgctccagggcaacatcccggtgtccatctact 285

                                                                      
Query: 311 ggtacggcaactttaagccggcgcagaaggcggtgatcctcgacttcctcctctcgctc 369
           |||||||||| || | ||||||||||||| || |  || ||||||||||||| ||||||
Sbjct: 286 ggtacggcaagttcacgccggcgcagaagtcgatactcttcgacttcctcctgtcgctc 344



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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 95/113 (84%)
 Strand = Plus / Minus

                                                                           
Query: 262     taccacaatggcgccgtgctccacggcgacatcgccgtgtccgtcctctggtacggcaac 321
               ||||||||||||||||||||   |||||||||| |||||||  ||||||||||||||   
Sbjct: 6192116 taccacaatggcgccgtgctgagcggcgacatccccgtgtcgatcctctggtacggccgg 6192057

                                                                    
Query: 322     tttaagccggcgcagaaggcggtgatcctcgacttcctcctctcgctcaccgc 374
               || | ||||||||||||||| ||  ||  ||||||| ||||||||||| ||||
Sbjct: 6192056 ttcacgccggcgcagaaggccgtcgtcaccgacttcgtcctctcgctcgccgc 6192004



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 94/115 (81%)
 Strand = Plus / Plus

                                                                           
Query: 257     tctcctaccacaatggcgccgtgctccacggcgacatcgccgtgtccgtcctctggtacg 316
               |||||||||||   ||||||||||||  |||||||||  ||||  || || | |||||||
Sbjct: 6210462 tctcctaccacggcggcgccgtgctcggcggcgacattcccgtcaccctcgtgtggtacg 6210521

                                                                      
Query: 317     gcaactttaagccggcgcagaaggcggtgatcctcgacttcctcctctcgctcac 371
               | || || |||||||||||||||||  |  || |||||||||||||||| |||||
Sbjct: 6210522 ggaagttcaagccggcgcagaaggccatcgtcgtcgacttcctcctctccctcac 6210576



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>dbj|AP003488.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0436F11
          Length = 165550

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 95/113 (84%)
 Strand = Plus / Minus

                                                                          
Query: 262    taccacaatggcgccgtgctccacggcgacatcgccgtgtccgtcctctggtacggcaac 321
              ||||||||||||||||||||   |||||||||| |||||||  ||||||||||||||   
Sbjct: 105935 taccacaatggcgccgtgctgagcggcgacatccccgtgtcgatcctctggtacggccgg 105876

                                                                   
Query: 322    tttaagccggcgcagaaggcggtgatcctcgacttcctcctctcgctcaccgc 374
              || | ||||||||||||||| ||  ||  ||||||| ||||||||||| ||||
Sbjct: 105875 ttcacgccggcgcagaaggccgtcgtcaccgacttcgtcctctcgctcgccgc 105823



 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 94/115 (81%)
 Strand = Plus / Plus

                                                                          
Query: 257    tctcctaccacaatggcgccgtgctccacggcgacatcgccgtgtccgtcctctggtacg 316
              |||||||||||   ||||||||||||  |||||||||  ||||  || || | |||||||
Sbjct: 124281 tctcctaccacggcggcgccgtgctcggcggcgacattcccgtcaccctcgtgtggtacg 124340

                                                                     
Query: 317    gcaactttaagccggcgcagaaggcggtgatcctcgacttcctcctctcgctcac 371
              | || || |||||||||||||||||  |  || |||||||||||||||| |||||
Sbjct: 124341 ggaagttcaagccggcgcagaaggccatcgtcgtcgacttcctcctctccctcac 124395



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>gb|AY570727.1| Oryza sativa (japonica cultivar-group) putative phi-1-like
           phosphate-induced protein mRNA, partial cds
          Length = 874

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 95/113 (84%)
 Strand = Plus / Plus

                                                                       
Query: 262 taccacaatggcgccgtgctccacggcgacatcgccgtgtccgtcctctggtacggcaac 321
           ||||||||||||||||||||   |||||||||| |||||||  ||||||||||||||   
Sbjct: 183 taccacaatggcgccgtgctgagcggcgacatccccgtgtcgatcctctggtacggccgg 242

                                                                
Query: 322 tttaagccggcgcagaaggcggtgatcctcgacttcctcctctcgctcaccgc 374
           || | ||||||||||||||| ||  ||  ||||||| ||||||||||| ||||
Sbjct: 243 ttcacgccggcgcagaaggccgtcgtcaccgacttcgtcctctcgctcgccgc 295



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>dbj|AK099621.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013053E02, full
           insert sequence
          Length = 837

 Score = 79.8 bits (40), Expect = 6e-12
 Identities = 91/108 (84%)
 Strand = Plus / Minus

                                                                       
Query: 262 taccacaatggcgccgtgctccacggcgacatcgccgtgtccgtcctctggtacggcaac 321
           ||||||||||||||||||||   |||||||||| |||||||  ||||||||||||||   
Sbjct: 539 taccacaatggcgccgtgctgagcggcgacatccccgtgtcgatcctctggtacggccgg 480

                                                           
Query: 322 tttaagccggcgcagaaggcggtgatcctcgacttcctcctctcgctc 369
           || | ||||||||||||||| ||  ||  ||||||| |||||||||||
Sbjct: 479 ttcacgccggcgcagaaggccgtcgtcaccgacttcgtcctctcgctc 432



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>dbj|AK061401.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-305-G10, full
           insert sequence
          Length = 962

 Score = 75.8 bits (38), Expect = 9e-11
 Identities = 92/110 (83%)
 Strand = Plus / Plus

                                                                       
Query: 265 cacaatggcgccgtgctccacggcgacatcgccgtgtccgtcctctggtacggcaacttt 324
           |||||||||||||||||   |||||||||| |||||||  ||||||||||||||   || 
Sbjct: 1   cacaatggcgccgtgctgagcggcgacatccccgtgtcgatcctctggtacggccggttc 60

                                                             
Query: 325 aagccggcgcagaaggcggtgatcctcgacttcctcctctcgctcaccgc 374
           | ||||||||||||||| ||  ||  ||||||| ||||||||||| ||||
Sbjct: 61  acgccggcgcagaaggccgtcgtcaccgacttcgtcctctcgctcgccgc 110



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>ref|XM_467877.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1222

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 75/88 (85%)
 Strand = Plus / Plus

                                                                       
Query: 286 ggcgacatcgccgtgtccgtcctctggtacggcaactttaagccggcgcagaaggcggtg 345
           ||||||||| ||||||| ||| |||||||||||  ||| | ||||||||||||||| || 
Sbjct: 252 ggcgacatccccgtgtcggtcgtctggtacggccgcttcacgccggcgcagaaggccgtc 311

                                       
Query: 346 atcctcgacttcctcctctcgctcaccg 373
            ||  |||||||||||||| ||||||||
Sbjct: 312 gtctccgacttcctcctcttgctcaccg 339



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>dbj|AK063605.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-118-C09, full
           insert sequence
          Length = 1222

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 75/88 (85%)
 Strand = Plus / Plus

                                                                       
Query: 286 ggcgacatcgccgtgtccgtcctctggtacggcaactttaagccggcgcagaaggcggtg 345
           ||||||||| ||||||| ||| |||||||||||  ||| | ||||||||||||||| || 
Sbjct: 252 ggcgacatccccgtgtcggtcgtctggtacggccgcttcacgccggcgcagaaggccgtc 311

                                       
Query: 346 atcctcgacttcctcctctcgctcaccg 373
            ||  |||||||||||||| ||||||||
Sbjct: 312 gtctccgacttcctcctcttgctcaccg 339



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>dbj|AP004727.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
            clone:P0516A04
          Length = 145107

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 94/115 (81%)
 Strand = Plus / Plus

                                                                        
Query: 257  tctcctaccacaatggcgccgtgctccacggcgacatcgccgtgtccgtcctctggtacg 316
            |||||||||||   ||||||||||||  |||||||||  ||||  || || | |||||||
Sbjct: 4538 tctcctaccacggcggcgccgtgctcggcggcgacattcccgtcaccctcgtgtggtacg 4597

                                                                   
Query: 317  gcaactttaagccggcgcagaaggcggtgatcctcgacttcctcctctcgctcac 371
            | || || |||||||||||||||||  |  || |||||||||||||||| |||||
Sbjct: 4598 ggaagttcaagccggcgcagaaggccatcgtcgtcgacttcctcctctccctcac 4652



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>ref|XM_506983.1| PREDICTED Oryza sativa (japonica cultivar-group), P0627E03.37-2
           mRNA
          Length = 1129

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 73/88 (82%)
 Strand = Plus / Plus

                                                                       
Query: 286 ggcgacatcgccgtgtccgtcctctggtacggcaactttaagccggcgcagaaggcggtg 345
           ||||||||| | |||||| |||||||||||||||| || | |||| |||||| | || | 
Sbjct: 246 ggcgacatcccggtgtccatcctctggtacggcaaattcacgccgacgcagatgtcgatc 305

                                       
Query: 346 atcctcgacttcctcctctcgctcaccg 373
           |||  ||||||| || ||||||||||||
Sbjct: 306 atcgccgacttcgtcgtctcgctcaccg 333



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>ref|XM_467873.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1127

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 73/88 (82%)
 Strand = Plus / Plus

                                                                       
Query: 286 ggcgacatcgccgtgtccgtcctctggtacggcaactttaagccggcgcagaaggcggtg 345
           ||||||||| | |||||| |||||||||||||||| || | |||| |||||| | || | 
Sbjct: 244 ggcgacatcccggtgtccatcctctggtacggcaaattcacgccgacgcagatgtcgatc 303

                                       
Query: 346 atcctcgacttcctcctctcgctcaccg 373
           |||  ||||||| || ||||||||||||
Sbjct: 304 atcgccgacttcgtcgtctcgctcaccg 331



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>ref|XM_467872.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1110

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 73/88 (82%)
 Strand = Plus / Plus

                                                                       
Query: 286 ggcgacatcgccgtgtccgtcctctggtacggcaactttaagccggcgcagaaggcggtg 345
           ||||||||| | |||||| |||||||||||||||| || | |||| |||||| | || | 
Sbjct: 245 ggcgacatcccggtgtccatcctctggtacggcaaattcacgccgacgcagatgtcgatc 304

                                       
Query: 346 atcctcgacttcctcctctcgctcaccg 373
           |||  ||||||| || ||||||||||||
Sbjct: 305 atcgccgacttcgtcgtctcgctcaccg 332



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>dbj|AK119695.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-157-C06, full
           insert sequence
          Length = 1110

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 73/88 (82%)
 Strand = Plus / Plus

                                                                       
Query: 286 ggcgacatcgccgtgtccgtcctctggtacggcaactttaagccggcgcagaaggcggtg 345
           ||||||||| | |||||| |||||||||||||||| || | |||| |||||| | || | 
Sbjct: 245 ggcgacatcccggtgtccatcctctggtacggcaaattcacgccgacgcagatgtcgatc 304

                                       
Query: 346 atcctcgacttcctcctctcgctcaccg 373
           |||  ||||||| || ||||||||||||
Sbjct: 305 atcgccgacttcgtcgtctcgctcaccg 332



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>dbj|AK101655.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033057F02, full
           insert sequence
          Length = 1128

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 73/88 (82%)
 Strand = Plus / Plus

                                                                       
Query: 286 ggcgacatcgccgtgtccgtcctctggtacggcaactttaagccggcgcagaaggcggtg 345
           ||||||||| | |||||| |||||||||||||||| || | |||| |||||| | || | 
Sbjct: 246 ggcgacatcccggtgtccatcctctggtacggcaaattcacgccgacgcagatgtcgatc 305

                                       
Query: 346 atcctcgacttcctcctctcgctcaccg 373
           |||  ||||||| || ||||||||||||
Sbjct: 306 atcgccgacttcgtcgtctcgctcaccg 333



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>dbj|AK063454.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-115-G05, full
           insert sequence
          Length = 1127

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 73/88 (82%)
 Strand = Plus / Plus

                                                                       
Query: 286 ggcgacatcgccgtgtccgtcctctggtacggcaactttaagccggcgcagaaggcggtg 345
           ||||||||| | |||||| |||||||||||||||| || | |||| |||||| | || | 
Sbjct: 244 ggcgacatcccggtgtccatcctctggtacggcaaattcacgccgacgcagatgtcgatc 303

                                       
Query: 346 atcctcgacttcctcctctcgctcaccg 373
           |||  ||||||| || ||||||||||||
Sbjct: 304 atcgccgacttcgtcgtctcgctcaccg 331



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>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence
          Length = 2726152

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 264    ccacaatggcgccgtgctcca 284
              |||||||||||||||||||||
Sbjct: 382173 ccacaatggcgccgtgctcca 382193



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>emb|AL391744.1|SPAC17D4 S.pombe chromosome I cosmid c17D4
          Length = 7856

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 350  tcgacttcctcctctcgctca 370
            |||||||||||||||||||||
Sbjct: 2045 tcgacttcctcctctcgctca 2025



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>ref|NM_001020121.1| Schizosaccharomyces pombe 972h- hypothetical protein (SPAC17D4.02),
           partial mRNA
          Length = 1917

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 350 tcgacttcctcctctcgctca 370
           |||||||||||||||||||||
Sbjct: 506 tcgacttcctcctctcgctca 486



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>dbj|AB001739.1| Schizosaccharomyces pombe DNA for SNA41, partial cds
          Length = 4350

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 350  tcgacttcctcctctcgctca 370
            |||||||||||||||||||||
Sbjct: 1398 tcgacttcctcctctcgctca 1378



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>gb|AE017344.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 4, complete
               sequence
          Length = 1783081

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 350     tcgacttcctcctctcgctc 369
               ||||||||||||||||||||
Sbjct: 1422294 tcgacttcctcctctcgctc 1422275



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>gb|AE017343.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 3, complete
              sequence
          Length = 2105742

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 277    gtgctccacggcgacatcgc 296
              ||||||||||||||||||||
Sbjct: 448222 gtgctccacggcgacatcgc 448241



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>ref|XM_569506.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein
            (CNC01620) partial mRNA
          Length = 4007

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 277  gtgctccacggcgacatcgc 296
            ||||||||||||||||||||
Sbjct: 1804 gtgctccacggcgacatcgc 1785



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>ref|XM_570056.1| Cryptococcus neoformans var. neoformans JEC21 guanine nucleotide
           exchange factor (CND05200) partial mRNA
          Length = 4731

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 350 tcgacttcctcctctcgctc 369
           ||||||||||||||||||||
Sbjct: 25  tcgacttcctcctctcgctc 44



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>ref|XM_570057.1| Cryptococcus neoformans var. neoformans JEC21 guanine nucleotide
           exchange factor (CND05200) partial mRNA
          Length = 4617

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 350 tcgacttcctcctctcgctc 369
           ||||||||||||||||||||
Sbjct: 25  tcgacttcctcctctcgctc 44



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>emb|AL732578.5| Human DNA sequence from clone RP11-421K1 on chromosome X Contains the 5'
              end of the GPR64 gene for G protein-coupled receptor 64 and
              a CpG island, complete sequence
          Length = 191318

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 142    ttcgtttgtgcaaaggcagt 161
              ||||||||||||||||||||
Sbjct: 143991 ttcgtttgtgcaaaggcagt 143972



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>gb|AC125787.2| Homo sapiens chromosome 5 clone CTD-2137I20, complete sequence
          Length = 117180

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 112   ccacagcccacaaagtgctc 131
             ||||||||||||||||||||
Sbjct: 27307 ccacagcccacaaagtgctc 27326



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>emb|BX640441.1| Bordetella bronchiseptica strain RB50, complete genome; segment 5/16
          Length = 348624

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 269    atggcgccgtgctccacggcgacatcgc 296
              ||||||||||||| |||||||| |||||
Sbjct: 110266 atggcgccgtgctgcacggcgaaatcgc 110239



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>emb|BX640426.1| Bordetella parapertussis strain 12822, complete genome; segment 4/14
          Length = 348866

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 269    atggcgccgtgctccacggcgacatcgc 296
              ||||||||||||| |||||||| |||||
Sbjct: 223259 atggcgccgtgctgcacggcgaaatcgc 223232



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>emb|BX640415.1| Bordetella pertussis strain Tohama I, complete genome; segment 5/12
          Length = 347071

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 269    atggcgccgtgctccacggcgacatcgc 296
              ||||||||||||| |||||||| |||||
Sbjct: 206511 atggcgccgtgctgcacggcgaaatcgc 206484



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>emb|AL939126.1|SCO939126 Streptomyces coelicolor A3(2) complete genome; segment 23/29
          Length = 295150

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 233   accggccggacccggccgac 252
             ||||||||||||||||||||
Sbjct: 43688 accggccggacccggccgac 43707



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>emb|AL591429.9| Mouse DNA sequence from clone RP23-307I20 on chromosome 11 Contains a
              novel gene, complete sequence
          Length = 149879

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 56     tctcatcagtctctgtggtc 75
              ||||||||||||||||||||
Sbjct: 106085 tctcatcagtctctgtggtc 106066



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>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 329    cggcgcagaaggcggtgatcctcg 352
              ||||||||||| ||||||||||||
Sbjct: 752066 cggcgcagaagacggtgatcctcg 752043


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,367,283
Number of Sequences: 3902068
Number of extensions: 2367283
Number of successful extensions: 51284
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 51020
Number of HSP's gapped (non-prelim): 253
length of query: 392
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 370
effective length of database: 17,147,199,772
effective search space: 6344463915640
effective search space used: 6344463915640
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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