Clone Name | bart50h12 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_467876.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1193 Score = 141 bits (71), Expect = 2e-30 Identities = 152/179 (84%) Strand = Plus / Plus Query: 191 cggcacaggtttgcatgggcgcgaggcggcgcatggagctgtaccggccggacccggccg 250 |||| ||||| | |||||| || ||||||||||||||||||||| ||| |||||||| | Sbjct: 166 cggctcaggtatccatgggtgcaaggcggcgcatggagctgtacaagccagacccggctg 225 Query: 251 acatgctctcctaccacaatggcgccgtgctccacggcgacatcgccgtgtccgtcctct 310 |||||||||||||||||| |||||||||||||| ||| ||||| | |||||| || || Sbjct: 226 acatgctctcctaccacagcggcgccgtgctccagggcaacatcccggtgtccatctact 285 Query: 311 ggtacggcaactttaagccggcgcagaaggcggtgatcctcgacttcctcctctcgctc 369 |||||||||| || | ||||||||||||| || | || ||||||||||||| |||||| Sbjct: 286 ggtacggcaagttcacgccggcgcagaagtcgatactcttcgacttcctcctgtcgctc 344
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 141 bits (71), Expect = 2e-30 Identities = 152/179 (84%) Strand = Plus / Minus Query: 191 cggcacaggtttgcatgggcgcgaggcggcgcatggagctgtaccggccggacccggccg 250 |||| ||||| | |||||| || ||||||||||||||||||||| ||| |||||||| | Sbjct: 31854681 cggctcaggtatccatgggtgcaaggcggcgcatggagctgtacaagccagacccggctg 31854622 Query: 251 acatgctctcctaccacaatggcgccgtgctccacggcgacatcgccgtgtccgtcctct 310 |||||||||||||||||| |||||||||||||| ||| ||||| | |||||| || || Sbjct: 31854621 acatgctctcctaccacagcggcgccgtgctccagggcaacatcccggtgtccatctact 31854562 Query: 311 ggtacggcaactttaagccggcgcagaaggcggtgatcctcgacttcctcctctcgctc 369 |||||||||| || | ||||||||||||| || | || ||||||||||||| |||||| Sbjct: 31854561 ggtacggcaagttcacgccggcgcagaagtcgatactcttcgacttcctcctgtcgctc 31854503 Score = 71.9 bits (36), Expect = 1e-09 Identities = 75/88 (85%) Strand = Plus / Minus Query: 286 ggcgacatcgccgtgtccgtcctctggtacggcaactttaagccggcgcagaaggcggtg 345 ||||||||| ||||||| ||| ||||||||||| ||| | ||||||||||||||| || Sbjct: 31860010 ggcgacatccccgtgtcggtcgtctggtacggccgcttcacgccggcgcagaaggccgtc 31859951 Query: 346 atcctcgacttcctcctctcgctcaccg 373 || |||||||||||||| |||||||| Sbjct: 31859950 gtctccgacttcctcctcttgctcaccg 31859923 Score = 56.0 bits (28), Expect = 9e-05 Identities = 73/88 (82%) Strand = Plus / Minus Query: 286 ggcgacatcgccgtgtccgtcctctggtacggcaactttaagccggcgcagaaggcggtg 345 ||||||||| | |||||| |||||||||||||||| || | |||| |||||| | || | Sbjct: 31843510 ggcgacatcccggtgtccatcctctggtacggcaaattcacgccgacgcagatgtcgatc 31843451 Query: 346 atcctcgacttcctcctctcgctcaccg 373 ||| ||||||| || |||||||||||| Sbjct: 31843450 atcgccgacttcgtcgtctcgctcaccg 31843423
>dbj|AP004814.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0471A11 Length = 157740 Score = 141 bits (71), Expect = 2e-30 Identities = 152/179 (84%) Strand = Plus / Minus Query: 191 cggcacaggtttgcatgggcgcgaggcggcgcatggagctgtaccggccggacccggccg 250 |||| ||||| | |||||| || ||||||||||||||||||||| ||| |||||||| | Sbjct: 15682 cggctcaggtatccatgggtgcaaggcggcgcatggagctgtacaagccagacccggctg 15623 Query: 251 acatgctctcctaccacaatggcgccgtgctccacggcgacatcgccgtgtccgtcctct 310 |||||||||||||||||| |||||||||||||| ||| ||||| | |||||| || || Sbjct: 15622 acatgctctcctaccacagcggcgccgtgctccagggcaacatcccggtgtccatctact 15563 Query: 311 ggtacggcaactttaagccggcgcagaaggcggtgatcctcgacttcctcctctcgctc 369 |||||||||| || | ||||||||||||| || | || ||||||||||||| |||||| Sbjct: 15562 ggtacggcaagttcacgccggcgcagaagtcgatactcttcgacttcctcctgtcgctc 15504 Score = 71.9 bits (36), Expect = 1e-09 Identities = 75/88 (85%) Strand = Plus / Minus Query: 286 ggcgacatcgccgtgtccgtcctctggtacggcaactttaagccggcgcagaaggcggtg 345 ||||||||| ||||||| ||| ||||||||||| ||| | ||||||||||||||| || Sbjct: 21011 ggcgacatccccgtgtcggtcgtctggtacggccgcttcacgccggcgcagaaggccgtc 20952 Query: 346 atcctcgacttcctcctctcgctcaccg 373 || |||||||||||||| |||||||| Sbjct: 20951 gtctccgacttcctcctcttgctcaccg 20924 Score = 56.0 bits (28), Expect = 9e-05 Identities = 73/88 (82%) Strand = Plus / Minus Query: 286 ggcgacatcgccgtgtccgtcctctggtacggcaactttaagccggcgcagaaggcggtg 345 ||||||||| | |||||| |||||||||||||||| || | |||| |||||| | || | Sbjct: 4511 ggcgacatcccggtgtccatcctctggtacggcaaattcacgccgacgcagatgtcgatc 4452 Query: 346 atcctcgacttcctcctctcgctcaccg 373 ||| ||||||| || |||||||||||| Sbjct: 4451 atcgccgacttcgtcgtctcgctcaccg 4424
>dbj|AP005012.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0627E03 Length = 159861 Score = 141 bits (71), Expect = 2e-30 Identities = 152/179 (84%) Strand = Plus / Minus Query: 191 cggcacaggtttgcatgggcgcgaggcggcgcatggagctgtaccggccggacccggccg 250 |||| ||||| | |||||| || ||||||||||||||||||||| ||| |||||||| | Sbjct: 150479 cggctcaggtatccatgggtgcaaggcggcgcatggagctgtacaagccagacccggctg 150420 Query: 251 acatgctctcctaccacaatggcgccgtgctccacggcgacatcgccgtgtccgtcctct 310 |||||||||||||||||| |||||||||||||| ||| ||||| | |||||| || || Sbjct: 150419 acatgctctcctaccacagcggcgccgtgctccagggcaacatcccggtgtccatctact 150360 Query: 311 ggtacggcaactttaagccggcgcagaaggcggtgatcctcgacttcctcctctcgctc 369 |||||||||| || | ||||||||||||| || | || ||||||||||||| |||||| Sbjct: 150359 ggtacggcaagttcacgccggcgcagaagtcgatactcttcgacttcctcctgtcgctc 150301 Score = 71.9 bits (36), Expect = 1e-09 Identities = 75/88 (85%) Strand = Plus / Minus Query: 286 ggcgacatcgccgtgtccgtcctctggtacggcaactttaagccggcgcagaaggcggtg 345 ||||||||| ||||||| ||| ||||||||||| ||| | ||||||||||||||| || Sbjct: 155808 ggcgacatccccgtgtcggtcgtctggtacggccgcttcacgccggcgcagaaggccgtc 155749 Query: 346 atcctcgacttcctcctctcgctcaccg 373 || |||||||||||||| |||||||| Sbjct: 155748 gtctccgacttcctcctcttgctcaccg 155721 Score = 56.0 bits (28), Expect = 9e-05 Identities = 73/88 (82%) Strand = Plus / Minus Query: 286 ggcgacatcgccgtgtccgtcctctggtacggcaactttaagccggcgcagaaggcggtg 345 ||||||||| | |||||| |||||||||||||||| || | |||| |||||| | || | Sbjct: 139308 ggcgacatcccggtgtccatcctctggtacggcaaattcacgccgacgcagatgtcgatc 139249 Query: 346 atcctcgacttcctcctctcgctcaccg 373 ||| ||||||| || |||||||||||| Sbjct: 139248 atcgccgacttcgtcgtctcgctcaccg 139221
>dbj|AK062900.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-108-F03, full insert sequence Length = 1193 Score = 141 bits (71), Expect = 2e-30 Identities = 152/179 (84%) Strand = Plus / Plus Query: 191 cggcacaggtttgcatgggcgcgaggcggcgcatggagctgtaccggccggacccggccg 250 |||| ||||| | |||||| || ||||||||||||||||||||| ||| |||||||| | Sbjct: 166 cggctcaggtatccatgggtgcaaggcggcgcatggagctgtacaagccagacccggctg 225 Query: 251 acatgctctcctaccacaatggcgccgtgctccacggcgacatcgccgtgtccgtcctct 310 |||||||||||||||||| |||||||||||||| ||| ||||| | |||||| || || Sbjct: 226 acatgctctcctaccacagcggcgccgtgctccagggcaacatcccggtgtccatctact 285 Query: 311 ggtacggcaactttaagccggcgcagaaggcggtgatcctcgacttcctcctctcgctc 369 |||||||||| || | ||||||||||||| || | || ||||||||||||| |||||| Sbjct: 286 ggtacggcaagttcacgccggcgcagaagtcgatactcttcgacttcctcctgtcgctc 344
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 81.8 bits (41), Expect = 2e-12 Identities = 95/113 (84%) Strand = Plus / Minus Query: 262 taccacaatggcgccgtgctccacggcgacatcgccgtgtccgtcctctggtacggcaac 321 |||||||||||||||||||| |||||||||| ||||||| |||||||||||||| Sbjct: 6192116 taccacaatggcgccgtgctgagcggcgacatccccgtgtcgatcctctggtacggccgg 6192057 Query: 322 tttaagccggcgcagaaggcggtgatcctcgacttcctcctctcgctcaccgc 374 || | ||||||||||||||| || || ||||||| ||||||||||| |||| Sbjct: 6192056 ttcacgccggcgcagaaggccgtcgtcaccgacttcgtcctctcgctcgccgc 6192004 Score = 61.9 bits (31), Expect = 1e-06 Identities = 94/115 (81%) Strand = Plus / Plus Query: 257 tctcctaccacaatggcgccgtgctccacggcgacatcgccgtgtccgtcctctggtacg 316 ||||||||||| |||||||||||| ||||||||| |||| || || | ||||||| Sbjct: 6210462 tctcctaccacggcggcgccgtgctcggcggcgacattcccgtcaccctcgtgtggtacg 6210521 Query: 317 gcaactttaagccggcgcagaaggcggtgatcctcgacttcctcctctcgctcac 371 | || || ||||||||||||||||| | || |||||||||||||||| ||||| Sbjct: 6210522 ggaagttcaagccggcgcagaaggccatcgtcgtcgacttcctcctctccctcac 6210576
>dbj|AP003488.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0436F11 Length = 165550 Score = 81.8 bits (41), Expect = 2e-12 Identities = 95/113 (84%) Strand = Plus / Minus Query: 262 taccacaatggcgccgtgctccacggcgacatcgccgtgtccgtcctctggtacggcaac 321 |||||||||||||||||||| |||||||||| ||||||| |||||||||||||| Sbjct: 105935 taccacaatggcgccgtgctgagcggcgacatccccgtgtcgatcctctggtacggccgg 105876 Query: 322 tttaagccggcgcagaaggcggtgatcctcgacttcctcctctcgctcaccgc 374 || | ||||||||||||||| || || ||||||| ||||||||||| |||| Sbjct: 105875 ttcacgccggcgcagaaggccgtcgtcaccgacttcgtcctctcgctcgccgc 105823 Score = 61.9 bits (31), Expect = 1e-06 Identities = 94/115 (81%) Strand = Plus / Plus Query: 257 tctcctaccacaatggcgccgtgctccacggcgacatcgccgtgtccgtcctctggtacg 316 ||||||||||| |||||||||||| ||||||||| |||| || || | ||||||| Sbjct: 124281 tctcctaccacggcggcgccgtgctcggcggcgacattcccgtcaccctcgtgtggtacg 124340 Query: 317 gcaactttaagccggcgcagaaggcggtgatcctcgacttcctcctctcgctcac 371 | || || ||||||||||||||||| | || |||||||||||||||| ||||| Sbjct: 124341 ggaagttcaagccggcgcagaaggccatcgtcgtcgacttcctcctctccctcac 124395
>gb|AY570727.1| Oryza sativa (japonica cultivar-group) putative phi-1-like phosphate-induced protein mRNA, partial cds Length = 874 Score = 81.8 bits (41), Expect = 2e-12 Identities = 95/113 (84%) Strand = Plus / Plus Query: 262 taccacaatggcgccgtgctccacggcgacatcgccgtgtccgtcctctggtacggcaac 321 |||||||||||||||||||| |||||||||| ||||||| |||||||||||||| Sbjct: 183 taccacaatggcgccgtgctgagcggcgacatccccgtgtcgatcctctggtacggccgg 242 Query: 322 tttaagccggcgcagaaggcggtgatcctcgacttcctcctctcgctcaccgc 374 || | ||||||||||||||| || || ||||||| ||||||||||| |||| Sbjct: 243 ttcacgccggcgcagaaggccgtcgtcaccgacttcgtcctctcgctcgccgc 295
>dbj|AK099621.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013053E02, full insert sequence Length = 837 Score = 79.8 bits (40), Expect = 6e-12 Identities = 91/108 (84%) Strand = Plus / Minus Query: 262 taccacaatggcgccgtgctccacggcgacatcgccgtgtccgtcctctggtacggcaac 321 |||||||||||||||||||| |||||||||| ||||||| |||||||||||||| Sbjct: 539 taccacaatggcgccgtgctgagcggcgacatccccgtgtcgatcctctggtacggccgg 480 Query: 322 tttaagccggcgcagaaggcggtgatcctcgacttcctcctctcgctc 369 || | ||||||||||||||| || || ||||||| ||||||||||| Sbjct: 479 ttcacgccggcgcagaaggccgtcgtcaccgacttcgtcctctcgctc 432
>dbj|AK061401.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-305-G10, full insert sequence Length = 962 Score = 75.8 bits (38), Expect = 9e-11 Identities = 92/110 (83%) Strand = Plus / Plus Query: 265 cacaatggcgccgtgctccacggcgacatcgccgtgtccgtcctctggtacggcaacttt 324 ||||||||||||||||| |||||||||| ||||||| |||||||||||||| || Sbjct: 1 cacaatggcgccgtgctgagcggcgacatccccgtgtcgatcctctggtacggccggttc 60 Query: 325 aagccggcgcagaaggcggtgatcctcgacttcctcctctcgctcaccgc 374 | ||||||||||||||| || || ||||||| ||||||||||| |||| Sbjct: 61 acgccggcgcagaaggccgtcgtcaccgacttcgtcctctcgctcgccgc 110
>ref|XM_467877.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1222 Score = 71.9 bits (36), Expect = 1e-09 Identities = 75/88 (85%) Strand = Plus / Plus Query: 286 ggcgacatcgccgtgtccgtcctctggtacggcaactttaagccggcgcagaaggcggtg 345 ||||||||| ||||||| ||| ||||||||||| ||| | ||||||||||||||| || Sbjct: 252 ggcgacatccccgtgtcggtcgtctggtacggccgcttcacgccggcgcagaaggccgtc 311 Query: 346 atcctcgacttcctcctctcgctcaccg 373 || |||||||||||||| |||||||| Sbjct: 312 gtctccgacttcctcctcttgctcaccg 339
>dbj|AK063605.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-118-C09, full insert sequence Length = 1222 Score = 71.9 bits (36), Expect = 1e-09 Identities = 75/88 (85%) Strand = Plus / Plus Query: 286 ggcgacatcgccgtgtccgtcctctggtacggcaactttaagccggcgcagaaggcggtg 345 ||||||||| ||||||| ||| ||||||||||| ||| | ||||||||||||||| || Sbjct: 252 ggcgacatccccgtgtcggtcgtctggtacggccgcttcacgccggcgcagaaggccgtc 311 Query: 346 atcctcgacttcctcctctcgctcaccg 373 || |||||||||||||| |||||||| Sbjct: 312 gtctccgacttcctcctcttgctcaccg 339
>dbj|AP004727.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0516A04 Length = 145107 Score = 61.9 bits (31), Expect = 1e-06 Identities = 94/115 (81%) Strand = Plus / Plus Query: 257 tctcctaccacaatggcgccgtgctccacggcgacatcgccgtgtccgtcctctggtacg 316 ||||||||||| |||||||||||| ||||||||| |||| || || | ||||||| Sbjct: 4538 tctcctaccacggcggcgccgtgctcggcggcgacattcccgtcaccctcgtgtggtacg 4597 Query: 317 gcaactttaagccggcgcagaaggcggtgatcctcgacttcctcctctcgctcac 371 | || || ||||||||||||||||| | || |||||||||||||||| ||||| Sbjct: 4598 ggaagttcaagccggcgcagaaggccatcgtcgtcgacttcctcctctccctcac 4652
>ref|XM_506983.1| PREDICTED Oryza sativa (japonica cultivar-group), P0627E03.37-2 mRNA Length = 1129 Score = 56.0 bits (28), Expect = 9e-05 Identities = 73/88 (82%) Strand = Plus / Plus Query: 286 ggcgacatcgccgtgtccgtcctctggtacggcaactttaagccggcgcagaaggcggtg 345 ||||||||| | |||||| |||||||||||||||| || | |||| |||||| | || | Sbjct: 246 ggcgacatcccggtgtccatcctctggtacggcaaattcacgccgacgcagatgtcgatc 305 Query: 346 atcctcgacttcctcctctcgctcaccg 373 ||| ||||||| || |||||||||||| Sbjct: 306 atcgccgacttcgtcgtctcgctcaccg 333
>ref|XM_467873.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1127 Score = 56.0 bits (28), Expect = 9e-05 Identities = 73/88 (82%) Strand = Plus / Plus Query: 286 ggcgacatcgccgtgtccgtcctctggtacggcaactttaagccggcgcagaaggcggtg 345 ||||||||| | |||||| |||||||||||||||| || | |||| |||||| | || | Sbjct: 244 ggcgacatcccggtgtccatcctctggtacggcaaattcacgccgacgcagatgtcgatc 303 Query: 346 atcctcgacttcctcctctcgctcaccg 373 ||| ||||||| || |||||||||||| Sbjct: 304 atcgccgacttcgtcgtctcgctcaccg 331
>ref|XM_467872.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1110 Score = 56.0 bits (28), Expect = 9e-05 Identities = 73/88 (82%) Strand = Plus / Plus Query: 286 ggcgacatcgccgtgtccgtcctctggtacggcaactttaagccggcgcagaaggcggtg 345 ||||||||| | |||||| |||||||||||||||| || | |||| |||||| | || | Sbjct: 245 ggcgacatcccggtgtccatcctctggtacggcaaattcacgccgacgcagatgtcgatc 304 Query: 346 atcctcgacttcctcctctcgctcaccg 373 ||| ||||||| || |||||||||||| Sbjct: 305 atcgccgacttcgtcgtctcgctcaccg 332
>dbj|AK119695.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-157-C06, full insert sequence Length = 1110 Score = 56.0 bits (28), Expect = 9e-05 Identities = 73/88 (82%) Strand = Plus / Plus Query: 286 ggcgacatcgccgtgtccgtcctctggtacggcaactttaagccggcgcagaaggcggtg 345 ||||||||| | |||||| |||||||||||||||| || | |||| |||||| | || | Sbjct: 245 ggcgacatcccggtgtccatcctctggtacggcaaattcacgccgacgcagatgtcgatc 304 Query: 346 atcctcgacttcctcctctcgctcaccg 373 ||| ||||||| || |||||||||||| Sbjct: 305 atcgccgacttcgtcgtctcgctcaccg 332
>dbj|AK101655.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033057F02, full insert sequence Length = 1128 Score = 56.0 bits (28), Expect = 9e-05 Identities = 73/88 (82%) Strand = Plus / Plus Query: 286 ggcgacatcgccgtgtccgtcctctggtacggcaactttaagccggcgcagaaggcggtg 345 ||||||||| | |||||| |||||||||||||||| || | |||| |||||| | || | Sbjct: 246 ggcgacatcccggtgtccatcctctggtacggcaaattcacgccgacgcagatgtcgatc 305 Query: 346 atcctcgacttcctcctctcgctcaccg 373 ||| ||||||| || |||||||||||| Sbjct: 306 atcgccgacttcgtcgtctcgctcaccg 333
>dbj|AK063454.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-115-G05, full insert sequence Length = 1127 Score = 56.0 bits (28), Expect = 9e-05 Identities = 73/88 (82%) Strand = Plus / Plus Query: 286 ggcgacatcgccgtgtccgtcctctggtacggcaactttaagccggcgcagaaggcggtg 345 ||||||||| | |||||| |||||||||||||||| || | |||| |||||| | || | Sbjct: 244 ggcgacatcccggtgtccatcctctggtacggcaaattcacgccgacgcagatgtcgatc 303 Query: 346 atcctcgacttcctcctctcgctcaccg 373 ||| ||||||| || |||||||||||| Sbjct: 304 atcgccgacttcgtcgtctcgctcaccg 331
>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence Length = 2726152 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 264 ccacaatggcgccgtgctcca 284 ||||||||||||||||||||| Sbjct: 382173 ccacaatggcgccgtgctcca 382193
>emb|AL391744.1|SPAC17D4 S.pombe chromosome I cosmid c17D4 Length = 7856 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 350 tcgacttcctcctctcgctca 370 ||||||||||||||||||||| Sbjct: 2045 tcgacttcctcctctcgctca 2025
>ref|NM_001020121.1| Schizosaccharomyces pombe 972h- hypothetical protein (SPAC17D4.02), partial mRNA Length = 1917 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 350 tcgacttcctcctctcgctca 370 ||||||||||||||||||||| Sbjct: 506 tcgacttcctcctctcgctca 486
>dbj|AB001739.1| Schizosaccharomyces pombe DNA for SNA41, partial cds Length = 4350 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 350 tcgacttcctcctctcgctca 370 ||||||||||||||||||||| Sbjct: 1398 tcgacttcctcctctcgctca 1378
>gb|AE017344.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 4, complete sequence Length = 1783081 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 350 tcgacttcctcctctcgctc 369 |||||||||||||||||||| Sbjct: 1422294 tcgacttcctcctctcgctc 1422275
>gb|AE017343.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 3, complete sequence Length = 2105742 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 277 gtgctccacggcgacatcgc 296 |||||||||||||||||||| Sbjct: 448222 gtgctccacggcgacatcgc 448241
>ref|XM_569506.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein (CNC01620) partial mRNA Length = 4007 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 277 gtgctccacggcgacatcgc 296 |||||||||||||||||||| Sbjct: 1804 gtgctccacggcgacatcgc 1785
>ref|XM_570056.1| Cryptococcus neoformans var. neoformans JEC21 guanine nucleotide exchange factor (CND05200) partial mRNA Length = 4731 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 350 tcgacttcctcctctcgctc 369 |||||||||||||||||||| Sbjct: 25 tcgacttcctcctctcgctc 44
>ref|XM_570057.1| Cryptococcus neoformans var. neoformans JEC21 guanine nucleotide exchange factor (CND05200) partial mRNA Length = 4617 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 350 tcgacttcctcctctcgctc 369 |||||||||||||||||||| Sbjct: 25 tcgacttcctcctctcgctc 44
>emb|AL732578.5| Human DNA sequence from clone RP11-421K1 on chromosome X Contains the 5' end of the GPR64 gene for G protein-coupled receptor 64 and a CpG island, complete sequence Length = 191318 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 142 ttcgtttgtgcaaaggcagt 161 |||||||||||||||||||| Sbjct: 143991 ttcgtttgtgcaaaggcagt 143972
>gb|AC125787.2| Homo sapiens chromosome 5 clone CTD-2137I20, complete sequence Length = 117180 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 112 ccacagcccacaaagtgctc 131 |||||||||||||||||||| Sbjct: 27307 ccacagcccacaaagtgctc 27326
>emb|BX640441.1| Bordetella bronchiseptica strain RB50, complete genome; segment 5/16 Length = 348624 Score = 40.1 bits (20), Expect = 5.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 269 atggcgccgtgctccacggcgacatcgc 296 ||||||||||||| |||||||| ||||| Sbjct: 110266 atggcgccgtgctgcacggcgaaatcgc 110239
>emb|BX640426.1| Bordetella parapertussis strain 12822, complete genome; segment 4/14 Length = 348866 Score = 40.1 bits (20), Expect = 5.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 269 atggcgccgtgctccacggcgacatcgc 296 ||||||||||||| |||||||| ||||| Sbjct: 223259 atggcgccgtgctgcacggcgaaatcgc 223232
>emb|BX640415.1| Bordetella pertussis strain Tohama I, complete genome; segment 5/12 Length = 347071 Score = 40.1 bits (20), Expect = 5.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 269 atggcgccgtgctccacggcgacatcgc 296 ||||||||||||| |||||||| ||||| Sbjct: 206511 atggcgccgtgctgcacggcgaaatcgc 206484
>emb|AL939126.1|SCO939126 Streptomyces coelicolor A3(2) complete genome; segment 23/29 Length = 295150 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 233 accggccggacccggccgac 252 |||||||||||||||||||| Sbjct: 43688 accggccggacccggccgac 43707
>emb|AL591429.9| Mouse DNA sequence from clone RP23-307I20 on chromosome 11 Contains a novel gene, complete sequence Length = 149879 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 56 tctcatcagtctctgtggtc 75 |||||||||||||||||||| Sbjct: 106085 tctcatcagtctctgtggtc 106066
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 329 cggcgcagaaggcggtgatcctcg 352 ||||||||||| |||||||||||| Sbjct: 752066 cggcgcagaagacggtgatcctcg 752043 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,367,283 Number of Sequences: 3902068 Number of extensions: 2367283 Number of successful extensions: 51284 Number of sequences better than 10.0: 36 Number of HSP's better than 10.0 without gapping: 36 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 51020 Number of HSP's gapped (non-prelim): 253 length of query: 392 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 370 effective length of database: 17,147,199,772 effective search space: 6344463915640 effective search space used: 6344463915640 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)