Clone Name | bart50h04 |
---|---|
Clone Library Name | barley_pub |
>RL7A_ORYSA (P35685) 60S ribosomal protein L7a| Length = 258 Score = 133 bits (334), Expect = 1e-31 Identities = 65/85 (76%), Positives = 66/85 (77%) Frame = +2 Query: 149 NPLFEKRPKQFGIGGALPPKKDLHRFVKWPXXXXXXXXXXXXXXXXXXPPALHQFTRTLD 328 NPLFEKRPKQFGIGGALPPKKDLHRFVKWP PPAL+QFTRTLD Sbjct: 22 NPLFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLD 81 Query: 329 KNLATNLFKMLLKYRPEDKVAKKER 403 KNLATNLFKMLLKYRPEDK AKKER Sbjct: 82 KNLATNLFKMLLKYRPEDKAAKKER 106
>RL7A_ARATH (P49692) 60S ribosomal protein L7a| Length = 257 Score = 122 bits (307), Expect = 2e-28 Identities = 58/85 (68%), Positives = 65/85 (76%) Frame = +2 Query: 149 NPLFEKRPKQFGIGGALPPKKDLHRFVKWPXXXXXXXXXXXXXXXXXXPPALHQFTRTLD 328 NPLFE+RPKQFGIGGALPPKKDL R++KWP PPAL+QFT+TLD Sbjct: 21 NPLFERRPKQFGIGGALPPKKDLSRYIKWPKSIRLQRQKRILKQRLKVPPALNQFTKTLD 80 Query: 329 KNLATNLFKMLLKYRPEDKVAKKER 403 KNLAT+LFK+LLKYRPEDK AKKER Sbjct: 81 KNLATSLFKVLLKYRPEDKAAKKER 105
>RL7A_FUGRU (O57592) 60S ribosomal protein L7a (Surfeit locus protein 3)| Length = 265 Score = 92.8 bits (229), Expect = 2e-19 Identities = 45/85 (52%), Positives = 53/85 (62%) Frame = +2 Query: 149 NPLFEKRPKQFGIGGALPPKKDLHRFVKWPXXXXXXXXXXXXXXXXXXPPALHQFTRTLD 328 NPLFEKRPK FGIG + PK+DL RFVKWP PPA++QFT+ LD Sbjct: 28 NPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYIRLQRQRSILYKRLKVPPAINQFTQALD 87 Query: 329 KNLATNLFKMLLKYRPEDKVAKKER 403 + AT LFK+ KYRPE K KK+R Sbjct: 88 RQTATQLFKLAHKYRPETKQEKKKR 112
>RL7A_RAT (P62425) 60S ribosomal protein L7a| Length = 265 Score = 90.9 bits (224), Expect = 7e-19 Identities = 44/85 (51%), Positives = 52/85 (61%) Frame = +2 Query: 149 NPLFEKRPKQFGIGGALPPKKDLHRFVKWPXXXXXXXXXXXXXXXXXXPPALHQFTRTLD 328 NPLFEKRPK FGIG + PK+DL RFVKWP PPA++QFT+ LD Sbjct: 28 NPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYIRLQRQRAILYKRLKVPPAINQFTQALD 87 Query: 329 KNLATNLFKMLLKYRPEDKVAKKER 403 + AT L K+ KYRPE K KK+R Sbjct: 88 RQTATQLLKLAHKYRPETKQEKKQR 112
>RL7A_MOUSE (P12970) 60S ribosomal protein L7a (Surfeit locus protein 3)| Length = 265 Score = 90.9 bits (224), Expect = 7e-19 Identities = 44/85 (51%), Positives = 52/85 (61%) Frame = +2 Query: 149 NPLFEKRPKQFGIGGALPPKKDLHRFVKWPXXXXXXXXXXXXXXXXXXPPALHQFTRTLD 328 NPLFEKRPK FGIG + PK+DL RFVKWP PPA++QFT+ LD Sbjct: 28 NPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYIRLQRQRAILYKRLKVPPAINQFTQALD 87 Query: 329 KNLATNLFKMLLKYRPEDKVAKKER 403 + AT L K+ KYRPE K KK+R Sbjct: 88 RQTATQLLKLAHKYRPETKQEKKQR 112
>RL7A_HUMAN (P62424) 60S ribosomal protein L7a (Surfeit locus protein 3) (PLA-X| polypeptide) Length = 265 Score = 90.9 bits (224), Expect = 7e-19 Identities = 44/85 (51%), Positives = 52/85 (61%) Frame = +2 Query: 149 NPLFEKRPKQFGIGGALPPKKDLHRFVKWPXXXXXXXXXXXXXXXXXXPPALHQFTRTLD 328 NPLFEKRPK FGIG + PK+DL RFVKWP PPA++QFT+ LD Sbjct: 28 NPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYIRLQRQRAILYKRLKVPPAINQFTQALD 87 Query: 329 KNLATNLFKMLLKYRPEDKVAKKER 403 + AT L K+ KYRPE K KK+R Sbjct: 88 RQTATQLLKLAHKYRPETKQEKKQR 112
>RL7A_DROME (P46223) 60S ribosomal protein L7a| Length = 271 Score = 90.5 bits (223), Expect = 9e-19 Identities = 44/85 (51%), Positives = 52/85 (61%) Frame = +2 Query: 149 NPLFEKRPKQFGIGGALPPKKDLHRFVKWPXXXXXXXXXXXXXXXXXXPPALHQFTRTLD 328 N LFEKRPK FGIG + PK+DL RFV+WP PP +HQF++TLD Sbjct: 34 NQLFEKRPKNFGIGQNVQPKRDLSRFVRWPKYIRVQRQKAVLQKRLKVPPPIHQFSQTLD 93 Query: 329 KNLATNLFKMLLKYRPEDKVAKKER 403 K A LFK+L KYRPE +AKK R Sbjct: 94 KTTAVKLFKLLEKYRPESPLAKKLR 118
>RL7A_ICTPU (Q90YW2) 60S ribosomal protein L7a| Length = 265 Score = 90.5 bits (223), Expect = 9e-19 Identities = 44/85 (51%), Positives = 51/85 (60%) Frame = +2 Query: 149 NPLFEKRPKQFGIGGALPPKKDLHRFVKWPXXXXXXXXXXXXXXXXXXPPALHQFTRTLD 328 NPLFEKRPK FGIG + PK+DL RFVKWP PPA++QF + LD Sbjct: 28 NPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYVRLQRHGSILYKRLKVPPAINQFNQALD 87 Query: 329 KNLATNLFKMLLKYRPEDKVAKKER 403 + AT LFK+ KYRPE K KK R Sbjct: 88 RQTATQLFKLAHKYRPETKQEKKRR 112
>RL7A_CHICK (P32429) 60S ribosomal protein L7a| Length = 265 Score = 89.4 bits (220), Expect = 2e-18 Identities = 43/85 (50%), Positives = 52/85 (61%) Frame = +2 Query: 149 NPLFEKRPKQFGIGGALPPKKDLHRFVKWPXXXXXXXXXXXXXXXXXXPPALHQFTRTLD 328 NPLFEKRPK FGIG + PK+DL RFVKWP PPA++QF++ LD Sbjct: 28 NPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRYIRLQRQRSILYKRLKVPPAINQFSQALD 87 Query: 329 KNLATNLFKMLLKYRPEDKVAKKER 403 + AT L K+ KYRPE K KK+R Sbjct: 88 RQTATQLLKLAHKYRPETKQEKKQR 112
>RL8_SCHPO (O13672) 60S ribosomal protein L8 (L7A) (L4)| Length = 258 Score = 89.0 bits (219), Expect = 2e-18 Identities = 43/85 (50%), Positives = 51/85 (60%) Frame = +2 Query: 149 NPLFEKRPKQFGIGGALPPKKDLHRFVKWPXXXXXXXXXXXXXXXXXXPPALHQFTRTLD 328 NPLF RP+ FGIG + PK+DL RFVKWP PPA+ QF +TLD Sbjct: 23 NPLFVSRPRSFGIGQDIQPKRDLSRFVKWPEYIRLQRRRKILNLRLKVPPAIAQFQKTLD 82 Query: 329 KNLATNLFKMLLKYRPEDKVAKKER 403 KN AT +FK+L KYRPE KK+R Sbjct: 83 KNTATQVFKLLNKYRPETAAEKKQR 107
>RL7A_ANOGA (O76732) 60S ribosomal protein L7a| Length = 271 Score = 80.5 bits (197), Expect = 9e-16 Identities = 39/85 (45%), Positives = 50/85 (58%) Frame = +2 Query: 149 NPLFEKRPKQFGIGGALPPKKDLHRFVKWPXXXXXXXXXXXXXXXXXXPPALHQFTRTLD 328 NPLFEKR K +GIG + PK+DL RFVKWP PP ++QFT+TLD Sbjct: 35 NPLFEKRVKNYGIGQNVQPKRDLSRFVKWPKYIRIQRHRAILQKRLKIPPPINQFTQTLD 94 Query: 329 KNLATNLFKMLLKYRPEDKVAKKER 403 K A + K KYRPE+ +A+ +R Sbjct: 95 KPTAQQVMKCWKKYRPENPIARVQR 119
>RL7A_CAEEL (Q966C6) 60S ribosomal protein L7a| Length = 264 Score = 77.8 bits (190), Expect = 6e-15 Identities = 39/85 (45%), Positives = 45/85 (52%) Frame = +2 Query: 149 NPLFEKRPKQFGIGGALPPKKDLHRFVKWPXXXXXXXXXXXXXXXXXXPPALHQFTRTLD 328 NPLFEKR + F IG + PKKD+ RFVKWP PP ++QF LD Sbjct: 29 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 88 Query: 329 KNLATNLFKMLLKYRPEDKVAKKER 403 A FK+L KYRPE AKK R Sbjct: 89 SQSARQAFKLLDKYRPESTEAKKNR 113
>RL8B_YEAST (P29453) 60S ribosomal protein L8-B (L7A-1) (L4-1) (YL5) (RP6)| Length = 255 Score = 77.4 bits (189), Expect = 8e-15 Identities = 38/85 (44%), Positives = 45/85 (52%) Frame = +2 Query: 149 NPLFEKRPKQFGIGGALPPKKDLHRFVKWPXXXXXXXXXXXXXXXXXXPPALHQFTRTLD 328 NPL PK FGIG A+ PK++L R+VKWP PP + QF TLD Sbjct: 23 NPLTHSTPKNFGIGQAVQPKRNLSRYVKWPEYVRLQRQKKILSIRLKVPPTIAQFQYTLD 82 Query: 329 KNLATNLFKMLLKYRPEDKVAKKER 403 +N A FK+ KYRPE KKER Sbjct: 83 RNTAAETFKLFNKYRPETAAEKKER 107
>RL8A_YEAST (P17076) 60S ribosomal protein L8-A (L7A-2) (L4-2) (YL5) (RP6)| (Maintenance of killer protein 7) Length = 255 Score = 77.4 bits (189), Expect = 8e-15 Identities = 38/85 (44%), Positives = 45/85 (52%) Frame = +2 Query: 149 NPLFEKRPKQFGIGGALPPKKDLHRFVKWPXXXXXXXXXXXXXXXXXXPPALHQFTRTLD 328 NPL PK FGIG A+ PK++L R+VKWP PP + QF TLD Sbjct: 23 NPLTHSTPKNFGIGQAVQPKRNLSRYVKWPEYVRVQRQKKILSIRLKVPPTIAQFQYTLD 82 Query: 329 KNLATNLFKMLLKYRPEDKVAKKER 403 +N A FK+ KYRPE KKER Sbjct: 83 RNTAAETFKLFNKYRPETAAEKKER 107
>RL7A_PIG (Q29375) 60S ribosomal protein L7a (Fragment)| Length = 132 Score = 28.5 bits (62), Expect = 4.0 Identities = 13/22 (59%), Positives = 15/22 (68%) Frame = +2 Query: 338 ATNLFKMLLKYRPEDKVAKKER 403 AT L K+ KYRPE K KK+R Sbjct: 3 ATQLLKVAHKYRPETKQEKKQR 24
>KCNKA_HUMAN (P57789) Potassium channel subfamily K member 10 (Outward| rectifying potassium channel protein TREK-2) (TREK-2 K(+) channel subunit) Length = 538 Score = 28.5 bits (62), Expect = 4.0 Identities = 14/33 (42%), Positives = 19/33 (57%) Frame = -2 Query: 162 SNSGFTTLSAAFFFAGTGALPPRFGAISPAAGG 64 +NS L +AFFFAGT +G I+P+ G Sbjct: 147 NNSSHWDLGSAFFFAGTVITTIGYGNIAPSTEG 179
>MAGC2_HUMAN (Q9UBF1) Melanoma-associated antigen C2 (MAGE-C2 antigen) (MAGE-E1| antigen) (Hepatocellular carcinoma-associated antigen 587) (Cancer-testis antigen 10) (CT10) Length = 373 Score = 27.7 bits (60), Expect = 6.8 Identities = 14/36 (38%), Positives = 21/36 (58%) Frame = +2 Query: 293 PPALHQFTRTLDKNLATNLFKMLLKYRPEDKVAKKE 400 P + FT TLD+ +A + +LLKY E+ V + E Sbjct: 131 PDSESSFTYTLDEKVAELVEFLLLKYEAEEPVTEAE 166 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.302 0.123 0.349 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 30,813,944 Number of Sequences: 219361 Number of extensions: 352809 Number of successful extensions: 603 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 584 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 589 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 1359926328 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 17 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 43 (21.8 bits)