ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart50g07 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AF000939.1|AF000939 Hordeum vulgare aleurone ribonuclease mRNA, partial cds Length = 739 Score = 775 bits (391), Expect = 0.0 Identities = 394/395 (99%) Strand = Plus / Plus Query: 13 acaggccaagatgaagctcgtcgtgctctcggccctgctcctgctttctctcgtcgccgt 72 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 10 acaggccaagatgaagctcgtcgtgctctcggccctgctcctgctttctctcgtcgccgt 69 Query: 73 ctcctcggcggaggaattcgatttcttctaccttgtgcagcaatggccagggtccttctg 132 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 70 ctcctcggcggaggaattcgatttcttctaccttgtgcagcaatggccagggtccttctg 129 Query: 133 tgacacgaagaaggggtgctgcttcccggacaccggcaagccggcgacggacttcggcat 192 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 130 tgacacgaagaaggggtgctgcttcccggacaccggcaagccggcgacggacttcggcat 189 Query: 193 ccacgggctctggcccaactacgccgagtgcaagacccgcggcgagctcgacggcgcctt 252 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 190 ccacgggctctggcccaactacgccgagtgcaagacccgcggcgagctcgacggtgcctt 249 Query: 253 ggagatggtgaccaggcggaggaagaagtgctggccggagtcctgcaacagcgagcgcct 312 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 250 ggagatggtgaccaggcggaggaagaagtgctggccggagtcctgcaacagcgagcgcct 309 Query: 313 caagctctgggaaatcagggacctggtgacggagctggacgccaactggccgacgctggc 372 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 310 caagctctgggaaatcagggacctggtgacggagctggacgccaactggccgacgctggc 369 Query: 373 gtgcaagggcgggaagagcttcgagttctggaccc 407 ||||||||||||||||||||||||||||||||||| Sbjct: 370 gtgcaagggcgggaagagcttcgagttctggaccc 404
>ref|NM_193078.2| Oryza sativa (japonica cultivar-group), mRNA Length = 1085 Score = 139 bits (70), Expect = 8e-30 Identities = 121/138 (87%) Strand = Plus / Plus Query: 86 gaattcgatttcttctaccttgtgcagcaatggccagggtccttctgtgacacgaagaag 145 |||||||| ||||||||||| || ||||| ||||| || || ||||| |||||| || Sbjct: 120 gaattcgacttcttctacctcgtccagcagtggcctggctcgttctgcgacacgcaggct 179 Query: 146 gggtgctgcttcccggacaccggcaagccggcgacggacttcggcatccacgggctctgg 205 ||||||||||||||||||||||||||||||||| |||| |||||||||||||| || ||| Sbjct: 180 gggtgctgcttcccggacaccggcaagccggcggcggagttcggcatccacggcctgtgg 239 Query: 206 cccaactacgccgagtgc 223 |||||||||||| ||||| Sbjct: 240 cccaactacgccaagtgc 257 Score = 97.6 bits (49), Expect = 3e-17 Identities = 76/85 (89%) Strand = Plus / Plus Query: 320 tgggaaatcagggacctggtgacggagctggacgccaactggccgacgctggcgtgcaag 379 ||||| |||| |||||| ||| ||||||| || || ||||||||||||||| |||||||| Sbjct: 402 tgggagatcaaggacctcgtggcggagctcgatgcgaactggccgacgctgtcgtgcaag 461 Query: 380 ggcgggaagagcttcgagttctgga 404 ||||| ||||||||||||||||||| Sbjct: 462 ggcggcaagagcttcgagttctgga 486 Score = 40.1 bits (20), Expect = 5.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 267 ggcggaggaagaagtgctggccggagtcctgc 298 ||||| || |||||||||||||||||| |||| Sbjct: 346 ggcggcggcagaagtgctggccggagtactgc 377
>ref|XM_506490.1| PREDICTED Oryza sativa (japonica cultivar-group), P0011H09.133 mRNA Length = 1097 Score = 139 bits (70), Expect = 8e-30 Identities = 121/138 (87%) Strand = Plus / Plus Query: 86 gaattcgatttcttctaccttgtgcagcaatggccagggtccttctgtgacacgaagaag 145 |||||||| ||||||||||| || ||||| ||||| || || ||||| |||||| || Sbjct: 122 gaattcgacttcttctacctcgtccagcagtggcctggctcgttctgcgacacgcaggct 181 Query: 146 gggtgctgcttcccggacaccggcaagccggcgacggacttcggcatccacgggctctgg 205 ||||||||||||||||||||||||||||||||| |||| |||||||||||||| || ||| Sbjct: 182 gggtgctgcttcccggacaccggcaagccggcggcggagttcggcatccacggcctgtgg 241 Query: 206 cccaactacgccgagtgc 223 |||||||||||| ||||| Sbjct: 242 cccaactacgccaagtgc 259 Score = 97.6 bits (49), Expect = 3e-17 Identities = 76/85 (89%) Strand = Plus / Plus Query: 320 tgggaaatcagggacctggtgacggagctggacgccaactggccgacgctggcgtgcaag 379 ||||| |||| |||||| ||| ||||||| || || ||||||||||||||| |||||||| Sbjct: 404 tgggagatcaaggacctcgtggcggagctcgatgcgaactggccgacgctgtcgtgcaag 463 Query: 380 ggcgggaagagcttcgagttctgga 404 ||||| ||||||||||||||||||| Sbjct: 464 ggcggcaagagcttcgagttctgga 488 Score = 40.1 bits (20), Expect = 5.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 267 ggcggaggaagaagtgctggccggagtcctgc 298 ||||| || |||||||||||||||||| |||| Sbjct: 348 ggcggcggcagaagtgctggccggagtactgc 379
>dbj|AK104512.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-302-H11, full insert sequence Length = 1085 Score = 139 bits (70), Expect = 8e-30 Identities = 121/138 (87%) Strand = Plus / Plus Query: 86 gaattcgatttcttctaccttgtgcagcaatggccagggtccttctgtgacacgaagaag 145 |||||||| ||||||||||| || ||||| ||||| || || ||||| |||||| || Sbjct: 120 gaattcgacttcttctacctcgtccagcagtggcctggctcgttctgcgacacgcaggct 179 Query: 146 gggtgctgcttcccggacaccggcaagccggcgacggacttcggcatccacgggctctgg 205 ||||||||||||||||||||||||||||||||| |||| |||||||||||||| || ||| Sbjct: 180 gggtgctgcttcccggacaccggcaagccggcggcggagttcggcatccacggcctgtgg 239 Query: 206 cccaactacgccgagtgc 223 |||||||||||| ||||| Sbjct: 240 cccaactacgccaagtgc 257 Score = 97.6 bits (49), Expect = 3e-17 Identities = 76/85 (89%) Strand = Plus / Plus Query: 320 tgggaaatcagggacctggtgacggagctggacgccaactggccgacgctggcgtgcaag 379 ||||| |||| |||||| ||| ||||||| || || ||||||||||||||| |||||||| Sbjct: 402 tgggagatcaaggacctcgtggcggagctcgatgcgaactggccgacgctgtcgtgcaag 461 Query: 380 ggcgggaagagcttcgagttctgga 404 ||||| ||||||||||||||||||| Sbjct: 462 ggcggcaagagcttcgagttctgga 486 Score = 40.1 bits (20), Expect = 5.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 267 ggcggaggaagaagtgctggccggagtcctgc 298 ||||| || |||||||||||||||||| |||| Sbjct: 346 ggcggcggcagaagtgctggccggagtactgc 377
>dbj|AK060320.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-007-F07, full insert sequence Length = 1097 Score = 139 bits (70), Expect = 8e-30 Identities = 121/138 (87%) Strand = Plus / Plus Query: 86 gaattcgatttcttctaccttgtgcagcaatggccagggtccttctgtgacacgaagaag 145 |||||||| ||||||||||| || ||||| ||||| || || ||||| |||||| || Sbjct: 122 gaattcgacttcttctacctcgtccagcagtggcctggctcgttctgcgacacgcaggct 181 Query: 146 gggtgctgcttcccggacaccggcaagccggcgacggacttcggcatccacgggctctgg 205 ||||||||||||||||||||||||||||||||| |||| |||||||||||||| || ||| Sbjct: 182 gggtgctgcttcccggacaccggcaagccggcggcggagttcggcatccacggcctgtgg 241 Query: 206 cccaactacgccgagtgc 223 |||||||||||| ||||| Sbjct: 242 cccaactacgccaagtgc 259 Score = 97.6 bits (49), Expect = 3e-17 Identities = 76/85 (89%) Strand = Plus / Plus Query: 320 tgggaaatcagggacctggtgacggagctggacgccaactggccgacgctggcgtgcaag 379 ||||| |||| |||||| ||| ||||||| || || ||||||||||||||| |||||||| Sbjct: 404 tgggagatcaaggacctcgtggcggagctcgatgcgaactggccgacgctgtcgtgcaag 463 Query: 380 ggcgggaagagcttcgagttctgga 404 ||||| ||||||||||||||||||| Sbjct: 464 ggcggcaagagcttcgagttctgga 488 Score = 40.1 bits (20), Expect = 5.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 267 ggcggaggaagaagtgctggccggagtcctgc 298 ||||| || |||||||||||||||||| |||| Sbjct: 348 ggcggcggcagaagtgctggccggagtactgc 379
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 115 bits (58), Expect = 1e-22 Identities = 73/78 (93%) Strand = Plus / Plus Query: 146 gggtgctgcttcccggacaccggcaagccggcgacggacttcggcatccacgggctctgg 205 ||||||||||||||||||||||||||||||||| |||| |||||||||||||| || ||| Sbjct: 26088426 gggtgctgcttcccggacaccggcaagccggcggcggagttcggcatccacggcctgtgg 26088485 Query: 206 cccaactacgccgagtgc 223 |||||||||||| ||||| Sbjct: 26088486 cccaactacgccaagtgc 26088503 Score = 97.6 bits (49), Expect = 3e-17 Identities = 76/85 (89%) Strand = Plus / Plus Query: 320 tgggaaatcagggacctggtgacggagctggacgccaactggccgacgctggcgtgcaag 379 ||||| |||| |||||| ||| ||||||| || || ||||||||||||||| |||||||| Sbjct: 26088648 tgggagatcaaggacctcgtggcggagctcgatgcgaactggccgacgctgtcgtgcaag 26088707 Query: 380 ggcgggaagagcttcgagttctgga 404 ||||| ||||||||||||||||||| Sbjct: 26088708 ggcggcaagagcttcgagttctgga 26088732 Score = 40.1 bits (20), Expect = 5.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 267 ggcggaggaagaagtgctggccggagtcctgc 298 ||||| || |||||||||||||||||| |||| Sbjct: 26088592 ggcggcggcagaagtgctggccggagtactgc 26088623
>dbj|AP004260.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0011H09 Length = 147992 Score = 115 bits (58), Expect = 1e-22 Identities = 73/78 (93%) Strand = Plus / Plus Query: 146 gggtgctgcttcccggacaccggcaagccggcgacggacttcggcatccacgggctctgg 205 ||||||||||||||||||||||||||||||||| |||| |||||||||||||| || ||| Sbjct: 121988 gggtgctgcttcccggacaccggcaagccggcggcggagttcggcatccacggcctgtgg 122047 Query: 206 cccaactacgccgagtgc 223 |||||||||||| ||||| Sbjct: 122048 cccaactacgccaagtgc 122065 Score = 97.6 bits (49), Expect = 3e-17 Identities = 76/85 (89%) Strand = Plus / Plus Query: 320 tgggaaatcagggacctggtgacggagctggacgccaactggccgacgctggcgtgcaag 379 ||||| |||| |||||| ||| ||||||| || || ||||||||||||||| |||||||| Sbjct: 122210 tgggagatcaaggacctcgtggcggagctcgatgcgaactggccgacgctgtcgtgcaag 122269 Query: 380 ggcgggaagagcttcgagttctgga 404 ||||| ||||||||||||||||||| Sbjct: 122270 ggcggcaagagcttcgagttctgga 122294 Score = 40.1 bits (20), Expect = 5.4 Identities = 29/32 (90%) Strand = Plus / Plus Query: 267 ggcggaggaagaagtgctggccggagtcctgc 298 ||||| || |||||||||||||||||| |||| Sbjct: 122154 ggcggcggcagaagtgctggccggagtactgc 122185
>ref|XM_482552.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1021 Score = 89.7 bits (45), Expect = 7e-15 Identities = 99/117 (84%) Strand = Plus / Plus Query: 95 ttcttctaccttgtgcagcaatggccagggtccttctgtgacacgaagaaggggtgctgc 154 ||||||| ||| |||| ||| ||||| ||||| | ||| ||||||||| || | |||||| Sbjct: 171 ttcttcttcctggtgctgcagtggcccgggtcgtactgcgacacgaagcagagctgctgc 230 Query: 155 ttcccggacaccggcaagccggcgacggacttcggcatccacgggctctggcccaac 211 | |||| | |||||||||||||| | ||||||||||||||||| |||||||||||| Sbjct: 231 tacccgcgctccggcaagccggcggccgacttcggcatccacggcctctggcccaac 287
>ref|XM_507238.1| PREDICTED Oryza sativa (japonica cultivar-group), P0431A03.26 mRNA Length = 1178 Score = 89.7 bits (45), Expect = 7e-15 Identities = 99/117 (84%) Strand = Plus / Plus Query: 95 ttcttctaccttgtgcagcaatggccagggtccttctgtgacacgaagaaggggtgctgc 154 ||||||| ||| |||| ||| ||||| ||||| | ||| ||||||||| || | |||||| Sbjct: 172 ttcttcttcctggtgctgcagtggcccgggtcgtactgcgacacgaagcagagctgctgc 231 Query: 155 ttcccggacaccggcaagccggcgacggacttcggcatccacgggctctggcccaac 211 | |||| | |||||||||||||| | ||||||||||||||||| |||||||||||| Sbjct: 232 tacccgcgctccggcaagccggcggccgacttcggcatccacggcctctggcccaac 288
>gb|AY528721.1| Triticum aestivum S-like RNase (WRN3) mRNA, partial cds Length = 799 Score = 89.7 bits (45), Expect = 7e-15 Identities = 102/121 (84%) Strand = Plus / Plus Query: 91 cgatttcttctaccttgtgcagcaatggccagggtccttctgtgacacgaagaaggggtg 150 ||||||||||||||| |||| ||| ||||| ||||| | ||| ||||||||| || | || Sbjct: 86 cgatttcttctacctcgtgctgcagtggccggggtcgtactgcgacacgaagcagagctg 145 Query: 151 ctgcttcccggacaccggcaagccggcgacggacttcggcatccacgggctctggcccaa 210 ||||| |||| ||||||| |||||| |||||||||| ||||||||||| |||||||| Sbjct: 146 ctgctacccgcggtccggcaaaccggcggcggacttcgggatccacgggctgtggcccaa 205 Query: 211 c 211 | Sbjct: 206 c 206
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 89.7 bits (45), Expect = 7e-15 Identities = 99/117 (84%) Strand = Plus / Plus Query: 95 ttcttctaccttgtgcagcaatggccagggtccttctgtgacacgaagaaggggtgctgc 154 ||||||| ||| |||| ||| ||||| ||||| | ||| ||||||||| || | |||||| Sbjct: 21043637 ttcttcttcctggtgctgcagtggcccgggtcgtactgcgacacgaagcagagctgctgc 21043696 Query: 155 ttcccggacaccggcaagccggcgacggacttcggcatccacgggctctggcccaac 211 | |||| | |||||||||||||| | ||||||||||||||||| |||||||||||| Sbjct: 21043697 tacccgcgctccggcaagccggcggccgacttcggcatccacggcctctggcccaac 21043753
>dbj|AP004666.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0431A03 Length = 149500 Score = 89.7 bits (45), Expect = 7e-15 Identities = 99/117 (84%) Strand = Plus / Plus Query: 95 ttcttctaccttgtgcagcaatggccagggtccttctgtgacacgaagaaggggtgctgc 154 ||||||| ||| |||| ||| ||||| ||||| | ||| ||||||||| || | |||||| Sbjct: 109812 ttcttcttcctggtgctgcagtggcccgggtcgtactgcgacacgaagcagagctgctgc 109871 Query: 155 ttcccggacaccggcaagccggcgacggacttcggcatccacgggctctggcccaac 211 | |||| | |||||||||||||| | ||||||||||||||||| |||||||||||| Sbjct: 109872 tacccgcgctccggcaagccggcggccgacttcggcatccacggcctctggcccaac 109928
>dbj|AP005757.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0413H11 Length = 147655 Score = 89.7 bits (45), Expect = 7e-15 Identities = 99/117 (84%) Strand = Plus / Plus Query: 95 ttcttctaccttgtgcagcaatggccagggtccttctgtgacacgaagaaggggtgctgc 154 ||||||| ||| |||| ||| ||||| ||||| | ||| ||||||||| || | |||||| Sbjct: 14847 ttcttcttcctggtgctgcagtggcccgggtcgtactgcgacacgaagcagagctgctgc 14906 Query: 155 ttcccggacaccggcaagccggcgacggacttcggcatccacgggctctggcccaac 211 | |||| | |||||||||||||| | ||||||||||||||||| |||||||||||| Sbjct: 14907 tacccgcgctccggcaagccggcggccgacttcggcatccacggcctctggcccaac 14963
>dbj|AK059802.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-204-G01, full insert sequence Length = 1021 Score = 89.7 bits (45), Expect = 7e-15 Identities = 99/117 (84%) Strand = Plus / Plus Query: 95 ttcttctaccttgtgcagcaatggccagggtccttctgtgacacgaagaaggggtgctgc 154 ||||||| ||| |||| ||| ||||| ||||| | ||| ||||||||| || | |||||| Sbjct: 171 ttcttcttcctggtgctgcagtggcccgggtcgtactgcgacacgaagcagagctgctgc 230 Query: 155 ttcccggacaccggcaagccggcgacggacttcggcatccacgggctctggcccaac 211 | |||| | |||||||||||||| | ||||||||||||||||| |||||||||||| Sbjct: 231 tacccgcgctccggcaagccggcggccgacttcggcatccacggcctctggcccaac 287
>dbj|AB052842.1| Oryza sativa mRNA for ribonuclease, complete cds Length = 1154 Score = 89.7 bits (45), Expect = 7e-15 Identities = 99/117 (84%) Strand = Plus / Plus Query: 95 ttcttctaccttgtgcagcaatggccagggtccttctgtgacacgaagaaggggtgctgc 154 ||||||| ||| |||| ||| ||||| ||||| | ||| ||||||||| || | |||||| Sbjct: 152 ttcttcttcctggtgctgcagtggcccgggtcgtactgcgacacgaagcagagctgctgc 211 Query: 155 ttcccggacaccggcaagccggcgacggacttcggcatccacgggctctggcccaac 211 | |||| | |||||||||||||| | ||||||||||||||||| |||||||||||| Sbjct: 212 tacccgcgctccggcaagccggcggccgacttcggcatccacggcctctggcccaac 268
>dbj|AB052844.1| Oryza sativa (japonica cultivar-group) mRNA for ribonuclease, partial cds, clone:E11124 Length = 739 Score = 89.7 bits (45), Expect = 7e-15 Identities = 99/117 (84%) Strand = Plus / Plus Query: 95 ttcttctaccttgtgcagcaatggccagggtccttctgtgacacgaagaaggggtgctgc 154 ||||||| ||| |||| ||| ||||| ||||| | ||| ||||||||| || | |||||| Sbjct: 170 ttcttcttcctggtgctgcagtggcccgggtcgtactgcgacacgaagcagagctgctgc 229 Query: 155 ttcccggacaccggcaagccggcgacggacttcggcatccacgggctctggcccaac 211 | |||| | |||||||||||||| | ||||||||||||||||| |||||||||||| Sbjct: 230 tacccgcgctccggcaagccggcggccgacttcggcatccacggcctctggcccaac 286
>dbj|AB052843.1| Oryza sativa (japonica cultivar-group) mRNA for ribonuclease, complete cds, clone:C30227 Length = 1005 Score = 89.7 bits (45), Expect = 7e-15 Identities = 99/117 (84%) Strand = Plus / Plus Query: 95 ttcttctaccttgtgcagcaatggccagggtccttctgtgacacgaagaaggggtgctgc 154 ||||||| ||| |||| ||| ||||| ||||| | ||| ||||||||| || | |||||| Sbjct: 144 ttcttcttcctggtgctgcagtggcccgggtcgtactgcgacacgaagcagagctgctgc 203 Query: 155 ttcccggacaccggcaagccggcgacggacttcggcatccacgggctctggcccaac 211 | |||| | |||||||||||||| | ||||||||||||||||| |||||||||||| Sbjct: 204 tacccgcgctccggcaagccggcggccgacttcggcatccacggcctctggcccaac 260
>gb|AY107950.1| Zea mays PCO076023 mRNA sequence Length = 1046 Score = 83.8 bits (42), Expect = 4e-13 Identities = 111/134 (82%) Strand = Plus / Plus Query: 78 cggcggaggaattcgatttcttctaccttgtgcagcaatggccagggtccttctgtgaca 137 ||||| |||| | ||| ||||||||||| |||| ||| ||||| ||| ||| ||| |||| Sbjct: 267 cggcgcaggactacgacttcttctacctcgtgctgcagtggccgggggcctactgcgaca 326 Query: 138 cgaagaaggggtgctgcttcccggacaccggcaagccggcgacggacttcggcatccacg 197 | ||| || | ||||||| ||| | |||||||||||||| |||||||||| ||||||| Sbjct: 327 ccaagcagagctgctgctaccccaagtccggcaagccggcggcggacttcgggatccacg 386 Query: 198 ggctctggcccaac 211 | |||||||||||| Sbjct: 387 gcctctggcccaac 400 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 352 cgccaactggccgacgctggcgtgc 376 |||||| |||||||||||||||||| Sbjct: 487 cgccaagtggccgacgctggcgtgc 511
>dbj|AK058502.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-016-F07, full insert sequence Length = 1178 Score = 81.8 bits (41), Expect = 2e-12 Identities = 98/117 (83%) Strand = Plus / Plus Query: 95 ttcttctaccttgtgcagcaatggccagggtccttctgtgacacgaagaaggggtgctgc 154 ||||||| ||| |||| ||| ||||| ||||| | ||| ||||||||| || | |||||| Sbjct: 172 ttcttcttcctggtgctgcagtggcccgggtcgtactgcgacacgaagcagagctgctgc 231 Query: 155 ttcccggacaccggcaagccggcgacggacttcggcatccacgggctctggcccaac 211 | |||| | |||||||||||||| | ||||||||||||||||| ||| |||||||| Sbjct: 232 tacccgcgctccggcaagccggcggccgacttcggcatccacggcctccggcccaac 288
>gb|AF000940.1|AF000940 Hordeum vulgare ribonuclease gene, complete cds Length = 1583 Score = 79.8 bits (40), Expect = 6e-12 Identities = 82/96 (85%) Strand = Plus / Plus Query: 116 tggccagggtccttctgtgacacgaagaaggggtgctgcttcccggacaccggcaagccg 175 ||||| ||||| | ||| |||||||||||| | ||||||| |||| || || |||||| Sbjct: 528 tggccggggtcgtactgcgacacgaagaagagctgctgctacccgcggacggggaagccg 587 Query: 176 gcgacggacttcggcatccacgggctctggcccaac 211 ||| |||||||||| ||||||||||||||||||||| Sbjct: 588 gcggcggacttcgggatccacgggctctggcccaac 623
>gb|BT019161.1| Zea mays clone Contig826.F mRNA sequence Length = 946 Score = 75.8 bits (38), Expect = 1e-10 Identities = 110/134 (82%) Strand = Plus / Minus Query: 78 cggcggaggaattcgatttcttctaccttgtgcagcaatggccagggtccttctgtgaca 137 ||||| |||| | ||| ||||||||||| |||| ||| ||||| ||| ||| ||| |||| Sbjct: 782 cggcgcaggactacgacttcttctacctcgtgctgcagtggccgggggcctactgcgaca 723 Query: 138 cgaagaaggggtgctgcttcccggacaccggcaagccggcgacggacttcggcatccacg 197 | ||| || | ||||||| ||| | |||||||||||||| |||||||| | ||||||| Sbjct: 722 ccaagcagagctgctgctaccccaagtccggcaagccggcggcggacttcaggatccacg 663 Query: 198 ggctctggcccaac 211 | |||||||||||| Sbjct: 662 gcctctggcccaac 649 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 352 cgccaactggccgacgctggcgtgc 376 |||||| |||||||||||||||||| Sbjct: 562 cgccaagtggccgacgctggcgtgc 538
>gb|AY517470.1| Triticum aestivum S-like RNase (WRN2) mRNA, complete cds Length = 850 Score = 73.8 bits (37), Expect = 4e-10 Identities = 97/117 (82%) Strand = Plus / Plus Query: 95 ttcttctaccttgtgcagcaatggccagggtccttctgtgacacgaagaaggggtgctgc 154 ||||||||||| |||| ||| ||||| ||||| | ||| ||||||||| || | |||||| Sbjct: 110 ttcttctacctcgtgctgcagtggccggggtcgtactgcgacacgaagcagagctgctgc 169 Query: 155 ttcccggacaccggcaagccggcgacggacttcggcatccacgggctctggcccaac 211 | |||| | || ||||||||| |||||||||| |||||||| |||||||||||| Sbjct: 170 tacccgcggtcggggaagccggcggcggacttcgggatccacggcctctggcccaac 226
>gb|AF202030.1|AF202030 Prunus dulcis RNase PD2 (Pd2) mRNA, complete cds Length = 790 Score = 58.0 bits (29), Expect = 2e-05 Identities = 47/53 (88%) Strand = Plus / Plus Query: 92 gatttcttctaccttgtgcagcaatggccagggtccttctgtgacacgaagaa 144 |||||||||||| |||| ||||| ||||||||||| | ||||||||| ||||| Sbjct: 79 gatttcttctactttgtccagcagtggccagggtcatactgtgacacaaagaa 131
>gb|U19924.1|ZEU19924 Zinnia elegans wounding-induced ribonuclease mRNA, complete cds Length = 802 Score = 50.1 bits (25), Expect = 0.006 Identities = 46/53 (86%) Strand = Plus / Plus Query: 89 ttcgatttcttctaccttgtgcagcaatggccagggtccttctgtgacacgaa 141 |||||||| ||||||||||| || |||||||| || || | |||||||||||| Sbjct: 108 ttcgattttttctaccttgttcaacaatggccgggatcatactgtgacacgaa 160
>gb|U19923.1|ZEU19923 Zinnia elegans ribonuclease mRNA, complete cds Length = 817 Score = 48.1 bits (24), Expect = 0.022 Identities = 42/48 (87%) Strand = Plus / Plus Query: 89 ttcgatttcttctaccttgtgcagcaatggccagggtccttctgtgac 136 ||||||||||||||| |||| || || ||||||||||| | ||||||| Sbjct: 106 ttcgatttcttctactttgttcaacagtggccagggtcatactgtgac 153
>gb|AE017283.1| Propionibacterium acnes KPA171202, complete genome Length = 2560265 Score = 46.1 bits (23), Expect = 0.088 Identities = 23/23 (100%) Strand = Plus / Plus Query: 166 cggcaagccggcgacggacttcg 188 ||||||||||||||||||||||| Sbjct: 379773 cggcaagccggcgacggacttcg 379795
>gb|AC167971.3| Mus musculus BAC clone RP24-439I22 from chromosome 7, complete sequence Length = 198057 Score = 44.1 bits (22), Expect = 0.35 Identities = 25/26 (96%) Strand = Plus / Plus Query: 84 aggaattcgatttcttctaccttgtg 109 ||||||| |||||||||||||||||| Sbjct: 184934 aggaattggatttcttctaccttgtg 184959
>gb|AC138657.1| Homo sapiens BAC clone RP11-141I1 from 4, complete sequence Length = 119794 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Plus Query: 95 ttcttctaccttgtgcagcaat 116 |||||||||||||||||||||| Sbjct: 116907 ttcttctaccttgtgcagcaat 116928
>gb|AE017221.1| Thermus thermophilus HB27, complete genome Length = 1894877 Score = 44.1 bits (22), Expect = 0.35 Identities = 22/22 (100%) Strand = Plus / Minus Query: 126 ccttctgtgacacgaagaaggg 147 |||||||||||||||||||||| Sbjct: 649278 ccttctgtgacacgaagaaggg 649257
>gb|AC130532.3| Mus musculus BAC clone RP23-189G24 from 7, complete sequence Length = 207333 Score = 44.1 bits (22), Expect = 0.35 Identities = 25/26 (96%) Strand = Plus / Plus Query: 84 aggaattcgatttcttctaccttgtg 109 ||||||| |||||||||||||||||| Sbjct: 49360 aggaattggatttcttctaccttgtg 49385
>gb|AC167973.4| Mus musculus BAC clone RP23-453B4 from chromosome 9, complete sequence Length = 182190 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 327 tcagggacctggtgacggagctgga 351 ||||||||||||||| ||||||||| Sbjct: 117144 tcagggacctggtgagggagctgga 117168
>gb|AC102652.9| Mus musculus chromosome 6, clone RP23-20L3, complete sequence Length = 229752 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 142 gaaggggtgctgcttcccggacacc 166 ||||||||||||||||| ||||||| Sbjct: 48312 gaaggggtgctgcttcctggacacc 48288
>gb|BC027353.1| Mus musculus tripartite motif protein 29, mRNA (cDNA clone MGC:28195 IMAGE:3988926), complete cds Length = 2763 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 327 tcagggacctggtgacggagctgga 351 ||||||||||||||| ||||||||| Sbjct: 969 tcagggacctggtgagggagctgga 993
>gb|BC006699.1| Mus musculus tripartite motif protein 29, mRNA (cDNA clone IMAGE:3498575), partial cds Length = 2582 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 327 tcagggacctggtgacggagctgga 351 ||||||||||||||| ||||||||| Sbjct: 785 tcagggacctggtgagggagctgga 809
>gb|AC163342.2| Mus musculus BAC clone RP24-115M13 from chromosome 9, complete sequence Length = 204620 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 327 tcagggacctggtgacggagctgga 351 ||||||||||||||| ||||||||| Sbjct: 10500 tcagggacctggtgagggagctgga 10524
>gb|DQ378284.1| Drosophila virilis strain Tucson 15010-1001.10 chromosome 4 fosmids 23A13 and 15G13, complete sequence Length = 54154 Score = 42.1 bits (21), Expect = 1.4 Identities = 27/29 (93%) Strand = Plus / Minus Query: 301 cagcgagcgcctcaagctctgggaaatca 329 |||||||||||| |||| ||||||||||| Sbjct: 5683 cagcgagcgcctaaagccctgggaaatca 5655
>gb|AC074325.7| Homo sapiens chromosome 10 clone RP11-542E6, complete sequence Length = 158587 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 253 ggagatggtgaccaggcggag 273 ||||||||||||||||||||| Sbjct: 46024 ggagatggtgaccaggcggag 46044
>dbj|AK013219.1| Mus musculus 10, 11 days embryo whole body cDNA, RIKEN full-length enriched library, clone:2810431N19 product:ATAXIA-TELANGIECTASIA GROUP D-ASSOCIATED PROTEIN (TRIPARTITE MOTIF PROTEIN TRIM29 ALPHA) homolog [Homo sapiens], full insert sequence Length = 1870 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 327 tcagggacctggtgacggagctgga 351 ||||||||||||||| ||||||||| Sbjct: 105 tcagggacctggtgagggagctgga 129
>dbj|AK028448.1| Mus musculus 0 day neonate skin cDNA, RIKEN full-length enriched library, clone:4631408J18 product:tripartite motif protein 29, full insert sequence Length = 2063 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 327 tcagggacctggtgacggagctgga 351 ||||||||||||||| ||||||||| Sbjct: 287 tcagggacctggtgagggagctgga 311
>ref|XM_310475.2| Anopheles gambiae str. PEST ENSANGP00000019220 (ENSANGG00000016731), mRNA Length = 720 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 267 ggcggaggaagaagtgctggc 287 ||||||||||||||||||||| Sbjct: 458 ggcggaggaagaagtgctggc 478
>ref|NM_023655.1| Mus musculus tripartite motif protein 29 (Trim29), mRNA Length = 2063 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Plus Query: 327 tcagggacctggtgacggagctgga 351 ||||||||||||||| ||||||||| Sbjct: 287 tcagggacctggtgagggagctgga 311
>gb|BC072194.1| Xenopus laevis hypothetical protein MGC81051, mRNA (cDNA clone MGC:81051 IMAGE:6316269), complete cds Length = 2431 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 80 gcggaggaattcgatttctt 99 |||||||||||||||||||| Sbjct: 1365 gcggaggaattcgatttctt 1346
>gb|AY658564.1| Synthetic construct Peudomonas aeruginosa clone FLH035264.01F PA3483 gene, partial cds Length = 801 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 294 cctgcaacagcgagcgcctc 313 |||||||||||||||||||| Sbjct: 203 cctgcaacagcgagcgcctc 222
>gb|AC121997.3| Mus musculus BAC clone RP24-312G4 from chromosome 14, complete sequence Length = 143266 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 94 tttcttctaccttgtgcagc 113 |||||||||||||||||||| Sbjct: 12202 tttcttctaccttgtgcagc 12183
>emb|AL451042.10| Human DNA sequence from clone RP11-276H7 on chromosome 1 Contains the EPHA2 gene for EphA2, two novel genes and two CpG islands, complete sequence Length = 88098 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 263 accaggcggaggaagaagtg 282 |||||||||||||||||||| Sbjct: 10846 accaggcggaggaagaagtg 10827
>emb|AL445222.9| Human DNA sequence from clone RP11-356B19 on chromosome 9 Contains the 3' end of the gene for a novel protein (DKFZp761J1523), the SLC2A8 gene for solute carrier family 2, (facilitated glucose transporter) member 8 (glucose transporter X1)(GLUT8, GLUTX1), the ZNF79 gene for zinc finger protein 79 (pT7), the RPL12 gene for ribosomal protein L12 (60S ribosomal protein L12), the gene for a novel protein, the gene for a novel protein (DKFZP434H0820)(FLJ13518, FLJ22151, FLJ22298) and four Cpg islands, complete sequence Length = 225370 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 309 gcctcaagctctgggaaatcaggg 332 |||||||||||||||||| ||||| Sbjct: 110619 gcctcaagctctgggaaagcaggg 110642
>gb|AE008830.1| Salmonella typhimurium LT2, section 134 of 220 of the complete genome Length = 20890 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 351 acgccaactggccgacgctg 370 |||||||||||||||||||| Sbjct: 4069 acgccaactggccgacgctg 4050
>emb|BX511059.10| Zebrafish DNA sequence from clone CH211-253P10 in linkage group 14, complete sequence Length = 107605 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 93 atttcttctaccttgtgcagcaat 116 ||||||||||||||||| |||||| Sbjct: 92572 atttcttctaccttgtggagcaat 92595
>gb|AE014178.1| Mus musculus piebald deletion region section 6 of 11 of the complete sequence Length = 400029 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 94 tttcttctaccttgtgcagc 113 |||||||||||||||||||| Sbjct: 169861 tttcttctaccttgtgcagc 169842
>gb|AY466441.1| Saccharopolyspora spinosa NRLL 18395 obscurin polyketide synthase gene locus, complete sequence Length = 108584 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 229 ccgcggcgagctcgacggcgcctt 252 |||||||||| ||||||||||||| Sbjct: 85899 ccgcggcgaggtcgacggcgcctt 85876
>gb|AE004769.1| Pseudomonas aeruginosa PAO1, section 330 of 529 of the complete genome Length = 13017 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 294 cctgcaacagcgagcgcctc 313 |||||||||||||||||||| Sbjct: 4404 cctgcaacagcgagcgcctc 4423
>gb|CP000026.1| Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150 Length = 4585229 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 351 acgccaactggccgacgctg 370 |||||||||||||||||||| Sbjct: 2809518 acgccaactggccgacgctg 2809499
>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence Length = 2094509 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 355 caactggccgacgctggcgt 374 |||||||||||||||||||| Sbjct: 1563965 caactggccgacgctggcgt 1563984
>emb|AL117692.5|CNS01DRP Human chromosome 14 DNA sequence BAC R-58E21 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 168874 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 266 aggcggaggaagaagtgctg 285 |||||||||||||||||||| Sbjct: 95923 aggcggaggaagaagtgctg 95904
>gb|DQ289495.1| Synthetic construct EpoE (epoE) gene, complete cds Length = 11460 Score = 40.1 bits (20), Expect = 5.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 165 ccggcaagccggcgacggacttcggcat 192 |||||||||||||||| |||| |||||| Sbjct: 10142 ccggcaagccggcgaccgactgcggcat 10169 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,878,674 Number of Sequences: 3902068 Number of extensions: 2878674 Number of successful extensions: 62154 Number of sequences better than 10.0: 55 Number of HSP's better than 10.0 without gapping: 55 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 61887 Number of HSP's gapped (non-prelim): 265 length of query: 407 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 385 effective length of database: 17,147,199,772 effective search space: 6601671912220 effective search space used: 6601671912220 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
