ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart50g04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC136842.2| Oryza sativa (japonica cultivar-group) chromosome... 198 1e-47
2gb|AC118347.2| Oryza sativa (japonica cultivar-group) chromosome... 198 1e-47
3dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 198 1e-47
4dbj|AK100744.1| Oryza sativa (japonica cultivar-group) cDNA clon... 198 1e-47
5gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 198 1e-47
6dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 58 2e-05
7dbj|AP005004.3| Oryza sativa (japonica cultivar-group) genomic D... 58 2e-05
8dbj|AK105563.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 2e-05
9ref|XM_874921.1| PREDICTED: Bos taurus similar to Nuclear factor... 46 0.095
10ref|XM_874841.1| PREDICTED: Bos taurus similar to Nuclear factor... 46 0.095
11ref|XM_874751.1| PREDICTED: Bos taurus similar to Nuclear factor... 46 0.095
12ref|XM_874668.1| PREDICTED: Bos taurus similar to Nuclear factor... 46 0.095
13ref|XM_580562.2| PREDICTED: Bos taurus similar to Nuclear factor... 46 0.095
14ref|XM_874257.1| PREDICTED: Bos taurus similar to Nuclear factor... 46 0.095
15ref|XM_874171.1| PREDICTED: Bos taurus similar to Nuclear factor... 46 0.095
16ref|XM_864731.1| PREDICTED: Bos taurus similar to Nuclear factor... 46 0.095
17gb|CP000142.2| Pelobacter carbinolicus DSM 2380, complete genome 46 0.095
18dbj|AP005613.2| Oryza sativa (japonica cultivar-group) genomic D... 46 0.095
19gb|AC097112.2| Oryza sativa (japonica cultivar-group) chromosome... 44 0.37
20gb|AC097111.2| Oryza sativa (japonica cultivar-group) chromosome... 44 0.37
21gb|CP000316.1| Polaromonas sp. JS666, complete genome 44 0.37
22gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, compl... 44 0.37
23dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.37
24gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete... 44 0.37
25emb|AL607070.19| Mouse DNA sequence from clone RP23-31C9 on chro... 44 0.37
26gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome 42 1.5
27gb|AY659095.1| Synthetic construct Peudomonas aeruginosa clone F... 42 1.5
28ref|XM_531936.2| PREDICTED: Canis familiaris similar to Nuclear ... 42 1.5
29emb|BX284700.13| Zebrafish DNA sequence from clone CH211-269O12 ... 42 1.5
30emb|CR788252.4| Zebrafish DNA sequence from clone DKEY-45J10 in ... 42 1.5
31gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome 42 1.5
32gb|AF165882.1|AF165882 Pseudomonas aeruginosa biosynthetic alani... 42 1.5
33gb|AE004906.1| Pseudomonas aeruginosa PAO1, section 467 of 529 o... 42 1.5
34gb|AE005018.1| Halobacterium sp. NRC-1 section 49 of 170 of the ... 42 1.5
35gb|AE017283.1| Propionibacterium acnes KPA171202, complete genome 40 5.8
36gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, com... 40 5.8
37ref|XM_655550.1| Aspergillus nidulans FGSC A4 hypothetical prote... 40 5.8
38gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome 40 5.8
39gb|DQ002406.1| Zea mays copia retrotransposon ji and helitron Mo... 40 5.8
40emb|AL136366.24| Human DNA sequence from clone RP11-413C16 on ch... 40 5.8
41emb|BX640444.1| Bordetella bronchiseptica strain RB50, complete ... 40 5.8
42emb|BX640427.1| Bordetella parapertussis strain 12822, complete ... 40 5.8
43emb|BX640417.1| Bordetella pertussis strain Tohama I, complete g... 40 5.8
44gb|CP000249.1| Frankia sp. CcI3, complete genome 40 5.8
45gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete g... 40 5.8
46dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
47gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome 40 5.8
48dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 5.8
49gb|AE004855.1| Pseudomonas aeruginosa PAO1, section 416 of 529 o... 40 5.8
50gb|AE004806.1| Pseudomonas aeruginosa PAO1, section 367 of 529 o... 40 5.8
51ref|XM_223412.3| PREDICTED: Rattus norvegicus similar to WD repe... 40 5.8
52gb|AC169379.4| Sorghum bicolor clone SB_BBc0088B22, complete seq... 40 5.8
53dbj|AP002093.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.8
54emb|BX648845.1|HSM808996 Homo sapiens mRNA; cDNA DKFZp686M02153 ... 40 5.8
55dbj|AK120918.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.8
56dbj|AK119445.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.8
57gb|AY104453.1| Zea mays PCO071460 mRNA sequence 40 5.8
58gb|AF082985.1|AF082985 Pseudomonas aeruginosa permease for AmpC ... 40 5.8
59gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 40 5.8
60gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 40 5.8
61dbj|AB010827.1| Pseudomonas aeruginosa gene for NhaP, complete cds 40 5.8 
>gb|AC136842.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
              OSJNBa0085C16, complete sequence
          Length = 156069

 Score =  198 bits (100), Expect = 1e-47
 Identities = 211/248 (85%)
 Strand = Plus / Minus

                                                                          
Query: 124    gcacgtggcgatgctgtcgacgcccgggatgggccacctgatcccgctggccgagctggc 183
              ||||||||||||||||  |||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 111794 gcacgtggcgatgctggtgacgccggggatggggcacctgatcccgctggccgagctggc 111735

                                                                          
Query: 184    gaagcgcctggccgcgcggcacggcgccacggccacgctcatcaccttcgcctccacggc 243
              |||||| ||||| ||| |||||||||  ||| | |||||  |||| ||||||||||||||
Sbjct: 111734 gaagcggctggcggcgaggcacggcgtgacgtcgacgctgctcacgttcgcctccacggc 111675

                                                                          
Query: 244    gtccgccacgcagcggggcttcctcgcctccctcccgccgcccatctcctcgctctccct 303
              ||| || ||||||||||  ||||| || || || |||||| | |||   ||| | || ||
Sbjct: 111674 gtcggcgacgcagcgggagttcctggcgtcgctgccgccggcgatcgagtcggtgtcgct 111615

                                                                          
Query: 304    cccgcccgtcgacctctccgacctgccgcccgacgcctccatcgagacgctcatgtccga 363
               || |||||||||||||||||||| ||  |||||||| ||||||||||||||||||| ||
Sbjct: 111614 gccccccgtcgacctctccgacctccccgccgacgccgccatcgagacgctcatgtcgga 111555

                      
Query: 364    ggagtgcg 371
              ||||||||
Sbjct: 111554 ggagtgcg 111547
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>gb|AC118347.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
              OSJNBa0043E10, complete sequence
          Length = 124591

 Score =  198 bits (100), Expect = 1e-47
 Identities = 211/248 (85%)
 Strand = Plus / Plus

                                                                          
Query: 124    gcacgtggcgatgctgtcgacgcccgggatgggccacctgatcccgctggccgagctggc 183
              ||||||||||||||||  |||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 120869 gcacgtggcgatgctggtgacgccggggatggggcacctgatcccgctggccgagctggc 120928

                                                                          
Query: 184    gaagcgcctggccgcgcggcacggcgccacggccacgctcatcaccttcgcctccacggc 243
              |||||| ||||| ||| |||||||||  ||| | |||||  |||| ||||||||||||||
Sbjct: 120929 gaagcggctggcggcgaggcacggcgtgacgtcgacgctgctcacgttcgcctccacggc 120988

                                                                          
Query: 244    gtccgccacgcagcggggcttcctcgcctccctcccgccgcccatctcctcgctctccct 303
              ||| || ||||||||||  ||||| || || || |||||| | |||   ||| | || ||
Sbjct: 120989 gtcggcgacgcagcgggagttcctggcgtcgctgccgccggcgatcgagtcggtgtcgct 121048

                                                                          
Query: 304    cccgcccgtcgacctctccgacctgccgcccgacgcctccatcgagacgctcatgtccga 363
               || |||||||||||||||||||| ||  |||||||| ||||||||||||||||||| ||
Sbjct: 121049 gccccccgtcgacctctccgacctccccgccgacgccgccatcgagacgctcatgtcgga 121108

                      
Query: 364    ggagtgcg 371
              ||||||||
Sbjct: 121109 ggagtgcg 121116
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score =  198 bits (100), Expect = 1e-47
 Identities = 211/248 (85%)
 Strand = Plus / Minus

                                                                            
Query: 124      gcacgtggcgatgctgtcgacgcccgggatgggccacctgatcccgctggccgagctggc 183
                ||||||||||||||||  |||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 22073798 gcacgtggcgatgctggtgacgccggggatggggcacctgatcccgctggccgagctggc 22073739

                                                                            
Query: 184      gaagcgcctggccgcgcggcacggcgccacggccacgctcatcaccttcgcctccacggc 243
                |||||| ||||| ||| |||||||||  ||| | |||||  |||| ||||||||||||||
Sbjct: 22073738 gaagcggctggcggcgaggcacggcgtgacgtcgacgctgctcacgttcgcctccacggc 22073679

                                                                            
Query: 244      gtccgccacgcagcggggcttcctcgcctccctcccgccgcccatctcctcgctctccct 303
                ||| || ||||||||||  ||||| || || || |||||| | |||   ||| | || ||
Sbjct: 22073678 gtcggcgacgcagcgggagttcctggcgtcgctgccgccggcgatcgagtcggtgtcgct 22073619

                                                                            
Query: 304      cccgcccgtcgacctctccgacctgccgcccgacgcctccatcgagacgctcatgtccga 363
                 || |||||||||||||||||||| ||  |||||||| ||||||||||||||||||| ||
Sbjct: 22073618 gccccccgtcgacctctccgacctccccgccgacgccgccatcgagacgctcatgtcgga 22073559

                        
Query: 364      ggagtgcg 371
                ||||||||
Sbjct: 22073558 ggagtgcg 22073551
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>dbj|AK100744.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023118G04, full
           insert sequence
          Length = 1862

 Score =  198 bits (100), Expect = 1e-47
 Identities = 211/248 (85%)
 Strand = Plus / Plus

                                                                       
Query: 124 gcacgtggcgatgctgtcgacgcccgggatgggccacctgatcccgctggccgagctggc 183
           ||||||||||||||||  |||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 204 gcacgtggcgatgctggtgacgccggggatggggcacctgatcccgctggccgagctggc 263

                                                                       
Query: 184 gaagcgcctggccgcgcggcacggcgccacggccacgctcatcaccttcgcctccacggc 243
           |||||| ||||| ||| |||||||||  ||| | |||||  |||| ||||||||||||||
Sbjct: 264 gaagcggctggcggcgaggcacggcgtgacgtcgacgctgctcacgttcgcctccacggc 323

                                                                       
Query: 244 gtccgccacgcagcggggcttcctcgcctccctcccgccgcccatctcctcgctctccct 303
           ||| || ||||||||||  ||||| || || || |||||| | |||   ||| | || ||
Sbjct: 324 gtcggcgacgcagcgggagttcctggcgtcgctgccgccggcgatcgagtcggtgtcgct 383

                                                                       
Query: 304 cccgcccgtcgacctctccgacctgccgcccgacgcctccatcgagacgctcatgtccga 363
            || |||||||||||||||||||| ||  |||||||| ||||||||||||||||||| ||
Sbjct: 384 gccccccgtcgacctctccgacctccccgccgacgccgccatcgagacgctcatgtcgga 443

                   
Query: 364 ggagtgcg 371
           ||||||||
Sbjct: 444 ggagtgcg 451
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  198 bits (100), Expect = 1e-47
 Identities = 211/248 (85%)
 Strand = Plus / Minus

                                                                            
Query: 124      gcacgtggcgatgctgtcgacgcccgggatgggccacctgatcccgctggccgagctggc 183
                ||||||||||||||||  |||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 22383709 gcacgtggcgatgctggtgacgccggggatggggcacctgatcccgctggccgagctggc 22383650

                                                                            
Query: 184      gaagcgcctggccgcgcggcacggcgccacggccacgctcatcaccttcgcctccacggc 243
                |||||| ||||| ||| |||||||||  ||| | |||||  |||| ||||||||||||||
Sbjct: 22383649 gaagcggctggcggcgaggcacggcgtgacgtcgacgctgctcacgttcgcctccacggc 22383590

                                                                            
Query: 244      gtccgccacgcagcggggcttcctcgcctccctcccgccgcccatctcctcgctctccct 303
                ||| || ||||||||||  ||||| || || || |||||| | |||   ||| | || ||
Sbjct: 22383589 gtcggcgacgcagcgggagttcctggcgtcgctgccgccggcgatcgagtcggtgtcgct 22383530

                                                                            
Query: 304      cccgcccgtcgacctctccgacctgccgcccgacgcctccatcgagacgctcatgtccga 363
                 || |||||||||||||||||||| ||  |||||||| ||||||||||||||||||| ||
Sbjct: 22383529 gccccccgtcgacctctccgacctccccgccgacgccgccatcgagacgctcatgtcgga 22383470

                        
Query: 364      ggagtgcg 371
                ||||||||
Sbjct: 22383469 ggagtgcg 22383462
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 68/81 (83%)
 Strand = Plus / Minus

                                                                           
Query: 155     ggccacctgatcccgctggccgagctggcgaagcgcctggccgcgcggcacggcgccacg 214
               |||||||| |||||||||||||||||||||  ||| || ||||  |  ||||||| | ||
Sbjct: 8092795 ggccacctcatcccgctggccgagctggcgcggcggctcgccgaccaccacggcgtcgcg 8092736

                                    
Query: 215     gccacgctcatcaccttcgcc 235
                |||||||| |||||||||||
Sbjct: 8092735 cccacgctcgtcaccttcgcc 8092715



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 29/30 (96%)
 Strand = Plus / Minus

                                             
Query: 155     ggccacctgatcccgctggccgagctggcg 184
               |||||||| |||||||||||||||||||||
Sbjct: 8076485 ggccacctcatcccgctggccgagctggcg 8076456



 Score = 46.1 bits (23), Expect = 0.095
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                              
Query: 155     ggccacctgatcccgctggccgagctggcga 185
               |||||||| ||||||||||||||| ||||||
Sbjct: 8034468 ggccacctcatcccgctggccgagttggcga 8034438



 Score = 44.1 bits (22), Expect = 0.37
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                             
Query: 155     ggccacctgatcccgctggccgagctggcg 184
               |||||||| |||||| ||||||||||||||
Sbjct: 8018642 ggccacctcatcccgatggccgagctggcg 8018613
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>dbj|AP005004.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0503B05
          Length = 156814

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 68/81 (83%)
 Strand = Plus / Minus

                                                                         
Query: 155   ggccacctgatcccgctggccgagctggcgaagcgcctggccgcgcggcacggcgccacg 214
             |||||||| |||||||||||||||||||||  ||| || ||||  |  ||||||| | ||
Sbjct: 80988 ggccacctcatcccgctggccgagctggcgcggcggctcgccgaccaccacggcgtcgcg 80929

                                  
Query: 215   gccacgctcatcaccttcgcc 235
              |||||||| |||||||||||
Sbjct: 80928 cccacgctcgtcaccttcgcc 80908



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 29/30 (96%)
 Strand = Plus / Minus

                                           
Query: 155   ggccacctgatcccgctggccgagctggcg 184
             |||||||| |||||||||||||||||||||
Sbjct: 64678 ggccacctcatcccgctggccgagctggcg 64649



 Score = 46.1 bits (23), Expect = 0.095
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                            
Query: 155   ggccacctgatcccgctggccgagctggcga 185
             |||||||| ||||||||||||||| ||||||
Sbjct: 22661 ggccacctcatcccgctggccgagttggcga 22631



 Score = 44.1 bits (22), Expect = 0.37
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 155  ggccacctgatcccgctggccgagctggcg 184
            |||||||| |||||| ||||||||||||||
Sbjct: 6835 ggccacctcatcccgatggccgagctggcg 6806
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>dbj|AK105563.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-128-B11, full
           insert sequence
          Length = 1694

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 68/81 (83%)
 Strand = Plus / Plus

                                                                       
Query: 155 ggccacctgatcccgctggccgagctggcgaagcgcctggccgcgcggcacggcgccacg 214
           |||||||| |||||||||||||||||||||  ||| || ||||  |  ||||||| | ||
Sbjct: 150 ggccacctcatcccgctggccgagctggcgcggcggctcgccgaccaccacggcgtcgcg 209

                                
Query: 215 gccacgctcatcaccttcgcc 235
            |||||||| |||||||||||
Sbjct: 210 cccacgctcgtcaccttcgcc 230
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>ref|XM_874921.1| PREDICTED: Bos taurus similar to Nuclear factor 1 B-type (Nuclear
           factor 1/B) (NF1-B) (NFI-B) (NF-I/B) (CCAAT-box binding
           transcription factor) (CTF) (TGGCA-binding protein),
           transcript variant 11 (LOC538474), mRNA
          Length = 4499

 Score = 46.1 bits (23), Expect = 0.095
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 288 tctcctcgctctccctcccgccc 310
           |||||||||||||||||||||||
Sbjct: 72  tctcctcgctctccctcccgccc 94
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>ref|XM_874841.1| PREDICTED: Bos taurus similar to Nuclear factor 1 B-type (Nuclear
           factor 1/B) (NF1-B) (NFI-B) (NF-I/B) (CCAAT-box binding
           transcription factor) (CTF) (TGGCA-binding protein),
           transcript variant 10 (LOC538474), mRNA
          Length = 4383

 Score = 46.1 bits (23), Expect = 0.095
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 288 tctcctcgctctccctcccgccc 310
           |||||||||||||||||||||||
Sbjct: 72  tctcctcgctctccctcccgccc 94
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>ref|XM_874751.1| PREDICTED: Bos taurus similar to Nuclear factor 1 B-type (Nuclear
           factor 1/B) (NF1-B) (NFI-B) (NF-I/B) (CCAAT-box binding
           transcription factor) (CTF) (TGGCA-binding protein),
           transcript variant 9 (LOC538474), mRNA
          Length = 4410

 Score = 46.1 bits (23), Expect = 0.095
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 288 tctcctcgctctccctcccgccc 310
           |||||||||||||||||||||||
Sbjct: 72  tctcctcgctctccctcccgccc 94
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>ref|XM_874668.1| PREDICTED: Bos taurus similar to Nuclear factor 1 B-type (Nuclear
           factor 1/B) (NF1-B) (NFI-B) (NF-I/B) (CCAAT-box binding
           transcription factor) (CTF) (TGGCA-binding protein),
           transcript variant 8 (LOC538474), mRNA
          Length = 4250

 Score = 46.1 bits (23), Expect = 0.095
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 288 tctcctcgctctccctcccgccc 310
           |||||||||||||||||||||||
Sbjct: 72  tctcctcgctctccctcccgccc 94
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>ref|XM_580562.2| PREDICTED: Bos taurus similar to Nuclear factor 1 B-type (Nuclear
           factor 1/B) (NF1-B) (NFI-B) (NF-I/B) (CCAAT-box binding
           transcription factor) (CTF) (TGGCA-binding protein),
           transcript variant 1 (LOC538474), mRNA
          Length = 1373

 Score = 46.1 bits (23), Expect = 0.095
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 288 tctcctcgctctccctcccgccc 310
           |||||||||||||||||||||||
Sbjct: 72  tctcctcgctctccctcccgccc 94
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>ref|XM_874257.1| PREDICTED: Bos taurus similar to Nuclear factor 1 B-type (Nuclear
           factor 1/B) (NF1-B) (NFI-B) (NF-I/B) (CCAAT-box binding
           transcription factor) (CTF) (TGGCA-binding protein),
           transcript variant 4 (LOC538474), mRNA
          Length = 4161

 Score = 46.1 bits (23), Expect = 0.095
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 288 tctcctcgctctccctcccgccc 310
           |||||||||||||||||||||||
Sbjct: 72  tctcctcgctctccctcccgccc 94
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>ref|XM_874171.1| PREDICTED: Bos taurus similar to Nuclear factor 1 B-type (Nuclear
           factor 1/B) (NF1-B) (NFI-B) (NF-I/B) (CCAAT-box binding
           transcription factor) (CTF) (TGGCA-binding protein),
           transcript variant 3 (LOC538474), mRNA
          Length = 4327

 Score = 46.1 bits (23), Expect = 0.095
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 288 tctcctcgctctccctcccgccc 310
           |||||||||||||||||||||||
Sbjct: 72  tctcctcgctctccctcccgccc 94
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>ref|XM_864731.1| PREDICTED: Bos taurus similar to Nuclear factor 1 B-type (Nuclear
           factor 1/B) (NF1-B) (NFI-B) (NF-I/B) (CCAAT-box binding
           transcription factor) (CTF) (TGGCA-binding protein),
           transcript variant 2 (LOC538474), mRNA
          Length = 4472

 Score = 46.1 bits (23), Expect = 0.095
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 288 tctcctcgctctccctcccgccc 310
           |||||||||||||||||||||||
Sbjct: 72  tctcctcgctctccctcccgccc 94
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>gb|CP000142.2| Pelobacter carbinolicus DSM 2380, complete genome
          Length = 3665893

 Score = 46.1 bits (23), Expect = 0.095
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                      
Query: 84      gcggcatctccggcggcacggcg 106
               |||||||||||||||||||||||
Sbjct: 2875563 gcggcatctccggcggcacggcg 2875585
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>dbj|AP005613.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0082C09
          Length = 160665

 Score = 46.1 bits (23), Expect = 0.095
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                             
Query: 155    ggccacctgatcccgctggccgagctggcga 185
              |||||||| ||||||||||||||| ||||||
Sbjct: 157883 ggccacctcatcccgctggccgagttggcga 157853



 Score = 44.1 bits (22), Expect = 0.37
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                            
Query: 155    ggccacctgatcccgctggccgagctggcg 184
              |||||||| |||||| ||||||||||||||
Sbjct: 142057 ggccacctcatcccgatggccgagctggcg 142028
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>gb|AC097112.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1741_B01,
             complete sequence
          Length = 147704

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 214   ggccacgctcatcaccttcgcc 235
             ||||||||||||||||||||||
Sbjct: 26622 ggccacgctcatcaccttcgcc 26601
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>gb|AC097111.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1014_C08,
             complete sequence
          Length = 95638

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 214   ggccacgctcatcaccttcgcc 235
             ||||||||||||||||||||||
Sbjct: 79283 ggccacgctcatcaccttcgcc 79262
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>gb|CP000316.1| Polaromonas sp. JS666, complete genome
          Length = 5200264

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 187     gcgcctggccgcgcggcacggc 208
               ||||||||||||||||||||||
Sbjct: 4008586 gcgcctggccgcgcggcacggc 4008607
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>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence
          Length = 4895836

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 188     cgcctggccgcgcggcacggcg 209
               ||||||||||||||||||||||
Sbjct: 2237193 cgcctggccgcgcggcacggcg 2237172
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 214      ggccacgctcatcaccttcgcc 235
                ||||||||||||||||||||||
Sbjct: 26381931 ggccacgctcatcaccttcgcc 26381910
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>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence
          Length = 2648638

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 313  cgacctctccgacctgccgccc 334
            ||||||||||||||||||||||
Sbjct: 5905 cgacctctccgacctgccgccc 5926
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>emb|AL607070.19| Mouse DNA sequence from clone RP23-31C9 on chromosome 4, complete
              sequence
          Length = 215106

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 268    cgcctccctcccgccgcccatctcct 293
              ||||||||||||||| ||||||||||
Sbjct: 163041 cgcctccctcccgcctcccatctcct 163066
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>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome
          Length = 6438405

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 380     gtgccggcgctgaccgaggtc 400
               |||||||||||||||||||||
Sbjct: 5915112 gtgccggcgctgaccgaggtc 5915092
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>gb|AY659095.1| Synthetic construct Peudomonas aeruginosa clone FLH037460.01F
           PA4930 gene, partial cds
          Length = 1077

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 311 gtcgacctctccgacctgccg 331
           |||||||||||||||||||||
Sbjct: 919 gtcgacctctccgacctgccg 939
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>ref|XM_531936.2| PREDICTED: Canis familiaris similar to Nuclear factor 1 B-type
           (Nuclear factor 1/B) (NF1-B) (NFI-B) (NF-I/B) (CCAAT-box
           binding transcription factor) (CTF) (TGGCA-binding
           protein), transcript variant 1 (LOC474709), mRNA
          Length = 4384

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 288 tctcctcgctctccctcccgc 308
           |||||||||||||||||||||
Sbjct: 33  tctcctcgctctccctcccgc 53
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>emb|BX284700.13| Zebrafish DNA sequence from clone CH211-269O12 in linkage group 13,
              complete sequence
          Length = 183756

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 271    ctccctcccgccgcccatctc 291
              |||||||||||||||||||||
Sbjct: 117599 ctccctcccgccgcccatctc 117579
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>emb|CR788252.4| Zebrafish DNA sequence from clone DKEY-45J10 in linkage group 13,
            complete sequence
          Length = 73390

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 271  ctccctcccgccgcccatctc 291
            |||||||||||||||||||||
Sbjct: 4906 ctccctcccgccgcccatctc 4886
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>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome
          Length = 7074893

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 380     gtgccggcgctgaccgaggtc 400
               |||||||||||||||||||||
Sbjct: 6583504 gtgccggcgctgaccgaggtc 6583484



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 376     gtcggtgccggcgctgaccg 395
               ||||||||||||||||||||
Sbjct: 2833785 gtcggtgccggcgctgaccg 2833766
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>gb|AF165882.1|AF165882 Pseudomonas aeruginosa biosynthetic alanine racemase (alr) gene,
           complete cds
          Length = 1104

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 311 gtcgacctctccgacctgccg 331
           |||||||||||||||||||||
Sbjct: 919 gtcgacctctccgacctgccg 939
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>gb|AE004906.1| Pseudomonas aeruginosa PAO1, section 467 of 529 of the complete
            genome
          Length = 13045

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 311  gtcgacctctccgacctgccg 331
            |||||||||||||||||||||
Sbjct: 4678 gtcgacctctccgacctgccg 4658
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>gb|AE005018.1| Halobacterium sp. NRC-1 section 49 of 170 of the complete genome
          Length = 10413

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 360  ccgaggagtgcgcgcggtcggtgcc 384
            ||||||| |||||||||||||||||
Sbjct: 1461 ccgaggactgcgcgcggtcggtgcc 1485
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>gb|AE017283.1| Propionibacterium acnes KPA171202, complete genome
          Length = 2560265

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 177    agctggcgaagcgcctggcc 196
              ||||||||||||||||||||
Sbjct: 642995 agctggcgaagcgcctggcc 642976
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>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence
          Length = 4126292

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 193    ggccgcgcggcacggcgccacggc 216
              ||||||||||||||||| ||||||
Sbjct: 509988 ggccgcgcggcacggcggcacggc 510011
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>ref|XM_655550.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN3038.2), mRNA
          Length = 1650

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 193  ggccgcgcggcacggcgccacggccacg 220
            ||||||||||  ||||||||||||||||
Sbjct: 1498 ggccgcgcggaccggcgccacggccacg 1471
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>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome
          Length = 3402093

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 84      gcggcatctccggcggcacg 103
               ||||||||||||||||||||
Sbjct: 2133090 gcggcatctccggcggcacg 2133071
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>gb|DQ002406.1| Zea mays copia retrotransposon ji and helitron Mo17_14577, complete
             sequence
          Length = 92777

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 10    ggagaaagagaaggagcatc 29
             ||||||||||||||||||||
Sbjct: 33306 ggagaaagagaaggagcatc 33325
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>emb|AL136366.24| Human DNA sequence from clone RP11-413C16 on chromosome 9p22.3-23
             Contains the 5' end of the NFIB gene for nuclear factor
             I/B (NFIB2, NRFIB3, NFI-RED), the 5' end of a novel gene
             and 2 CpG islands, complete sequence
          Length = 120282

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 288   tctcctcgctctccctcccgcccg 311
             ||||| ||||||||||||||||||
Sbjct: 91073 tctccccgctctccctcccgcccg 91050
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>emb|BX640444.1| Bordetella bronchiseptica strain RB50, complete genome; segment 8/16
          Length = 349008

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 190    cctggccgcgcggcacggcgccac 213
              ||||||||||| ||||||||||||
Sbjct: 216565 cctggccgcgctgcacggcgccac 216542
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>emb|BX640427.1| Bordetella parapertussis strain 12822, complete genome; segment 5/14
          Length = 348997

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 190    cctggccgcgcggcacggcgccac 213
              ||||||||||| ||||||||||||
Sbjct: 129079 cctggccgcgctgcacggcgccac 129056
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>emb|BX640417.1| Bordetella pertussis strain Tohama I, complete genome; segment 7/12
          Length = 348934

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 190    cctggccgcgcggcacggcgccac 213
              ||||||||||| ||||||||||||
Sbjct: 149162 cctggccgcgctgcacggcgccac 149185
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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 189     gcctggccgcgcggcacggc 208
               ||||||||||||||||||||
Sbjct: 1582156 gcctggccgcgcggcacggc 1582175
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>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome
          Length = 2909809

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 377     tcggtgccggcgctgaccgaggtc 400
               |||||| |||||||||||||||||
Sbjct: 1278527 tcggtgtcggcgctgaccgaggtc 1278550
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 202     gcacggcgccacggccacgc 221
               ||||||||||||||||||||
Sbjct: 5971624 gcacggcgccacggccacgc 5971605
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>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome
          Length = 3304561

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 190     cctggccgcgcggcacggcgccacggcc 217
               ||||||||||| || |||||||||||||
Sbjct: 2489638 cctggccgcgctgctcggcgccacggcc 2489611
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 230     ttcgcctccacggcgtccgc 249
               ||||||||||||||||||||
Sbjct: 2265926 ttcgcctccacggcgtccgc 2265907



 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 323    gacctgccgcccgacgcctc 342
              ||||||||||||||||||||
Sbjct: 714136 gacctgccgcccgacgcctc 714117
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>gb|AE004855.1| Pseudomonas aeruginosa PAO1, section 416 of 529 of the complete
            genome
          Length = 11578

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 187  gcgcctggccgcgcggcacg 206
            ||||||||||||||||||||
Sbjct: 2514 gcgcctggccgcgcggcacg 2533
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>gb|AE004806.1| Pseudomonas aeruginosa PAO1, section 367 of 529 of the complete
            genome
          Length = 10506

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 310  cgtcgacctctccgacctgc 329
            ||||||||||||||||||||
Sbjct: 1218 cgtcgacctctccgacctgc 1199
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>ref|XM_223412.3| PREDICTED: Rattus norvegicus similar to WD repeat membrane protein
            (predicted) (LOC305349), mRNA
          Length = 4367

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 177  agctggcgaagcgcctggcc 196
            ||||||||||||||||||||
Sbjct: 2332 agctggcgaagcgcctggcc 2351
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>gb|AC169379.4| Sorghum bicolor clone SB_BBc0088B22, complete sequence
          Length = 105215

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 102   cggcggaggccggccggcca 121
             ||||||||||||||||||||
Sbjct: 95035 cggcggaggccggccggcca 95054
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>dbj|AP002093.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0466B10
          Length = 151806

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 202   gcacggcgccacggccacgc 221
             ||||||||||||||||||||
Sbjct: 39512 gcacggcgccacggccacgc 39493
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>emb|BX648845.1|HSM808996 Homo sapiens mRNA; cDNA DKFZp686M02153 (from clone DKFZp686M02153)
          Length = 2740

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 288 tctcctcgctctccctcccgcccg 311
           ||||| ||||||||||||||||||
Sbjct: 39  tctccccgctctccctcccgcccg 62
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>dbj|AK120918.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023034N15, full
           insert sequence
          Length = 1612

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 219 cgctcatcaccttcgcctcc 238
           ||||||||||||||||||||
Sbjct: 31  cgctcatcaccttcgcctcc 50
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>dbj|AK119445.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-133-C12, full
           insert sequence
          Length = 991

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 219 cgctcatcaccttcgcctcc 238
           ||||||||||||||||||||
Sbjct: 30  cgctcatcaccttcgcctcc 49
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>gb|AY104453.1| Zea mays PCO071460 mRNA sequence
          Length = 1528

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 70 agcaatggaggcgagcggca 89
          ||||||||||||||||||||
Sbjct: 29 agcaatggaggcgagcggca 48
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>gb|AF082985.1|AF082985 Pseudomonas aeruginosa permease for AmpC beta-lactamase expression
            AmpG (ampG) gene, complete cds; and unknown gene
          Length = 2960

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 187  gcgcctggccgcgcggcacg 206
            ||||||||||||||||||||
Sbjct: 1605 gcgcctggccgcgcggcacg 1624
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>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 376     gtcggtgccggcgctgaccg 395
               ||||||||||||||||||||
Sbjct: 4138981 gtcggtgccggcgctgaccg 4139000
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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 163     gatcccgctggccgagctgg 182
               ||||||||||||||||||||
Sbjct: 1980622 gatcccgctggccgagctgg 1980603
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>dbj|AB010827.1| Pseudomonas aeruginosa gene for NhaP, complete cds
          Length = 1809

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 310 cgtcgacctctccgacctgc 329
           ||||||||||||||||||||
Sbjct: 609 cgtcgacctctccgacctgc 628


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,661,728
Number of Sequences: 3902068
Number of extensions: 2661728
Number of successful extensions: 70933
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 68702
Number of HSP's gapped (non-prelim): 2228
length of query: 434
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 412
effective length of database: 17,147,199,772
effective search space: 7064646306064
effective search space used: 7064646306064
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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