ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart50g02 |
|---|---|
| Clone Library Name | barley_pub |
>MTRB_MYCTU (Q50496) Sensor histidine kinase mtrB (EC 2.7.13.3)| Length = 567 Score = 31.6 bits (70), Expect = 0.49 Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 1/66 (1%) Frame = -1 Query: 296 VARGDTAPDGARAVEKTVSMDTQVKSARNTTSQNRRPDMDAAVAGD-TAPLPYLLDGWRT 120 + R T G E+T S+D+ ++ ARNT + P A +AG A L DG R Sbjct: 81 IERARTTVSGIVNGEETRSLDSSLQLARNTLTSKTDPASGAGLAGAFDAVLMVPGDGPRA 140 Query: 119 RSSFGP 102 S+ GP Sbjct: 141 ASTAGP 146
>MTRB_MYCBO (P59963) Sensor histidine kinase mtrB (EC 2.7.13.3)| Length = 567 Score = 31.6 bits (70), Expect = 0.49 Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 1/66 (1%) Frame = -1 Query: 296 VARGDTAPDGARAVEKTVSMDTQVKSARNTTSQNRRPDMDAAVAGD-TAPLPYLLDGWRT 120 + R T G E+T S+D+ ++ ARNT + P A +AG A L DG R Sbjct: 81 IERARTTVSGIVNGEETRSLDSSLQLARNTLTSKTDPASGAGLAGAFDAVLMVPGDGPRA 140 Query: 119 RSSFGP 102 S+ GP Sbjct: 141 ASTAGP 146
>MAAZ4_SCHCO (P37938) Mating-type protein A-alpha Z4| Length = 940 Score = 31.2 bits (69), Expect = 0.64 Identities = 13/31 (41%), Positives = 19/31 (61%) Frame = -1 Query: 281 TAPDGARAVEKTVSMDTQVKSARNTTSQNRR 189 T PD A ++T + T S+R+TTSQ +R Sbjct: 696 TEPDEATTADETTTQSTSASSSRDTTSQQKR 726
>IRS2_HUMAN (Q9Y4H2) Insulin receptor substrate 2 (IRS-2)| Length = 1338 Score = 30.8 bits (68), Expect = 0.83 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 3/35 (8%) Frame = +3 Query: 72 PGVGRDEGNVGAEAAPRPPAV---EQVRQWGGVAG 167 PG G DE G +AP+PP + E ++W AG Sbjct: 53 PGAGGDEATAGGGSAPQPPRLEYYESEKKWRSKAG 87
>ECTB_BORPA (Q7W979) Diaminobutyrate--2-oxoglutarate transaminase (EC 2.6.1.76)| (Diaminobutyrate--2-oxoglutarate aminotransferase) (L-2,4-diaminobutyric acid transaminase) (DABA aminotransferase) Length = 435 Score = 30.4 bits (67), Expect = 1.1 Identities = 26/92 (28%), Positives = 36/92 (39%), Gaps = 17/92 (18%) Frame = -1 Query: 281 TAPDGARAVEKTVSMDTQVKSARN-----------------TTSQNRRPDMDAAVAGDTA 153 T P G AVE + + QVK N T+ + D G+T Sbjct: 107 TGPTGTNAVEAALKLARQVKGRSNIISFTHGFHGVSGGSLAATANAKFRDAAGVSLGNTT 166 Query: 152 PLPYLLDGWRTRSSFGPDIAFISPYPRQLEWP 57 +PY DG+ FGPD+ I+ R L+ P Sbjct: 167 FMPY--DGY-----FGPDVDTIAYIERMLDDP 191
>ECTB_BORBR (Q7WHI8) Diaminobutyrate--2-oxoglutarate transaminase (EC 2.6.1.76)| (Diaminobutyrate--2-oxoglutarate aminotransferase) (L-2,4-diaminobutyric acid transaminase) (DABA aminotransferase) Length = 435 Score = 30.4 bits (67), Expect = 1.1 Identities = 26/92 (28%), Positives = 36/92 (39%), Gaps = 17/92 (18%) Frame = -1 Query: 281 TAPDGARAVEKTVSMDTQVKSARN-----------------TTSQNRRPDMDAAVAGDTA 153 T P G AVE + + QVK N T+ + D G+T Sbjct: 107 TGPTGTNAVEAALKLARQVKGRSNIISFTHGFHGVSGGSLAATANAKFRDAAGVSLGNTT 166 Query: 152 PLPYLLDGWRTRSSFGPDIAFISPYPRQLEWP 57 +PY DG+ FGPD+ I+ R L+ P Sbjct: 167 FMPY--DGY-----FGPDVDTIAYIERMLDDP 191
>MTRB_MYCLE (Q9CCJ1) Sensor histidine kinase mtrB (EC 2.7.13.3)| Length = 562 Score = 30.4 bits (67), Expect = 1.1 Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 1/66 (1%) Frame = -1 Query: 296 VARGDTAPDGARAVEKTVSMDTQVKSARNTTSQNRRPDMDAAVAGD-TAPLPYLLDGWRT 120 + R T G E+T S+D+ ++ ARNT + P A + G A L DG RT Sbjct: 81 IERARTTVTGIVNGEETRSLDSSLQLARNTLTSKTDPTSGAGLVGAFDAVLIVPGDGPRT 140 Query: 119 RSSFGP 102 ++ GP Sbjct: 141 ATTAGP 146
>WRK57_ARATH (Q9C983) Probable WRKY transcription factor 57 (WRKY DNA-binding| protein 57) Length = 287 Score = 29.3 bits (64), Expect = 2.4 Identities = 21/71 (29%), Positives = 31/71 (43%) Frame = -1 Query: 284 DTAPDGARAVEKTVSMDTQVKSARNTTSQNRRPDMDAAVAGDTAPLPYLLDGWRTRSSFG 105 D A + + EKT +T VK + + R+P D + L DG+R R +G Sbjct: 101 DPAENSTASAEKTPPPETPVKEKKKAQKRIRQPRFAFMTKSD---VDNLEDGYRWR-KYG 156 Query: 104 PDIAFISPYPR 72 SP+PR Sbjct: 157 QKAVKNSPFPR 167
>CDON_RAT (O35158) Cell adhesion molecule-related/down-regulated by oncogenes| precursor Length = 1256 Score = 29.3 bits (64), Expect = 2.4 Identities = 20/55 (36%), Positives = 26/55 (47%) Frame = +1 Query: 88 MKAMSGPKLLLVRQPSSKYGNGAVSPATAASMSGRRFWLVVFLALFTCVSMLTVF 252 MK +S P PSS G V PAT+ + S +L+V L V +L VF Sbjct: 933 MKELSTP-------PSSSGNGGNVGPATSPARSSDMLYLIVGCVLGVMVLILLVF 980
>CSPG2_HUMAN (P13611) Versican core protein precursor (Large fibroblast| proteoglycan) (Chondroitin sulfate proteoglycan core protein 2) (PG-M) (Glial hyaluronate-binding protein) (GHAP) Length = 3396 Score = 29.3 bits (64), Expect = 2.4 Identities = 19/52 (36%), Positives = 21/52 (40%) Frame = +3 Query: 9 THINGVTNTGAQELEHRPFQLPGVGRDEGNVGAEAAPRPPAVEQVRQWGGVA 164 T N + N GAQ EH PGV G PR PA + Q G A Sbjct: 1794 TETNTLENLGAQTTEHSSIHQPGV-----QEGLTTLPRSPASVFMEQGSGEA 1840
>PR285_HUMAN (Q9BYK8) Peroxisomal proliferator-activated receptor A-interacting| complex 285 kDa protein (EC 3.6.1.-) (ATP-dependent helicase PRIC285) (PPAR-alpha-interacting complex protein 285) (PPAR-gamma DBD-interacting protein 1) (PDIP1) Length = 2649 Score = 28.9 bits (63), Expect = 3.2 Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 4/64 (6%) Frame = +1 Query: 67 SCLG*GEMKAMS----GPKLLLVRQPSSKYGNGAVSPATAASMSGRRFWLVVFLALFTCV 234 SC G E + + G ++ +RQ + G VS + + GR+F +VV + TC Sbjct: 820 SCWGGREQRCICVVSHGAQVSALRQELRRRDLGQVSVGSFEILPGRQFRVVVLSTVHTCQ 879 Query: 235 SMLT 246 S+L+ Sbjct: 880 SLLS 883
>SC61A_CANAL (Q9P8E3) Protein transport protein SEC61 alpha subunit| Length = 479 Score = 28.1 bits (61), Expect = 5.4 Identities = 14/59 (23%), Positives = 29/59 (49%) Frame = +1 Query: 97 MSGPKLLLVRQPSSKYGNGAVSPATAASMSGRRFWLVVFLALFTCVSMLTVFSTARAPS 273 MSG ++L + +P S + ++P R W ++ L +F +S + ++ A + S Sbjct: 1 MSGFRVLDLVKPFSPFLPEVIAPERKVQFQQRVMWTIITLLIFLVMSEIPLYGIASSDS 59
>CSCR_SHIFL (P62572) Sucrose operon repressor (Csc operon regulatory protein)| Length = 331 Score = 28.1 bits (61), Expect = 5.4 Identities = 13/30 (43%), Positives = 18/30 (60%) Frame = -1 Query: 221 SARNTTSQNRRPDMDAAVAGDTAPLPYLLD 132 SAR +Q R+P A +A DTA P+ +D Sbjct: 50 SARKMRAQGRKPSTLAVLAQDTATTPFSVD 79
>CSCR_ECOLI (P62604) Sucrose operon repressor (Csc operon regulatory protein)| Length = 331 Score = 28.1 bits (61), Expect = 5.4 Identities = 13/30 (43%), Positives = 18/30 (60%) Frame = -1 Query: 221 SARNTTSQNRRPDMDAAVAGDTAPLPYLLD 132 SAR +Q R+P A +A DTA P+ +D Sbjct: 50 SARKMRAQGRKPSTLAVLAQDTATTPFSVD 79
>CDON_MOUSE (Q32MD9) Cell adhesion molecule-related/down-regulated by oncogenes| precursor Length = 1250 Score = 27.7 bits (60), Expect = 7.0 Identities = 16/41 (39%), Positives = 21/41 (51%) Frame = +1 Query: 130 PSSKYGNGAVSPATAASMSGRRFWLVVFLALFTCVSMLTVF 252 PSS G V PAT+ + S +L+V L V +L VF Sbjct: 939 PSSSGNAGNVGPATSPARSSDMLYLIVGCVLGVMVLILMVF 979
>PSD_ARCFU (O28234) Phosphatidylserine decarboxylase proenzyme (EC 4.1.1.65)| [Contains: Phosphatidylserine decarboxylase alpha chain; Phosphatidylserine decarboxylase beta chain] Length = 195 Score = 27.3 bits (59), Expect = 9.2 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 2/38 (5%) Frame = +1 Query: 124 RQPSSKYGNGAVSPATAA--SMSGRRFWLVVFLALFTC 231 R P K G G VSPA + GRR L +F++ F C Sbjct: 43 RDPERKIGEGVVSPADGRIDYLEGRR--LEIFMSPFDC 78
>PGTA_SALTY (P06184) Phosphoglycerate transport system transcriptional| regulatory protein pgtA Length = 415 Score = 27.3 bits (59), Expect = 9.2 Identities = 11/14 (78%), Positives = 12/14 (85%) Frame = +3 Query: 42 QELEHRPFQLPGVG 83 Q LEHRPF+L GVG Sbjct: 239 QSLEHRPFRLVGVG 252 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 34,183,769 Number of Sequences: 219361 Number of extensions: 561561 Number of successful extensions: 2203 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 2094 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2203 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 1402043640 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
