ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart50g02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 70 6e-09
2dbj|AP004871.3| Oryza sativa (japonica cultivar-group) genomic D... 70 6e-09
3dbj|AP004843.2| Oryza sativa (japonica cultivar-group) genomic D... 70 6e-09
4gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete... 50 0.005
5gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence 44 0.32
6gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, com... 44 0.32
7emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromos... 44 0.32
8gb|AF072887.1|AF072887 Burkholderia pseudomallei regulator AmrR ... 44 0.32
9gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, com... 44 0.32
10ref|NM_190715.1| Oryza sativa (japonica cultivar-group), predic... 42 1.3
11gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, compl... 42 1.3
12dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
13gb|AC148867.3| Monodelphis domestica clone VMRC6-379O2, complete... 42 1.3
14dbj|AP003611.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
15dbj|AP003287.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
16dbj|AK059299.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.3
17gb|DP000021.1| Monodelphis domestica target 1 genomic scaffold 42 1.3
18emb|AL928681.5| Mouse DNA sequence from clone RP23-82M15 on chro... 42 1.3
19ref|XM_481433.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.0
20ref|XM_475441.1| Oryza sativa (japonica cultivar-group), predic... 40 5.0
21gb|AY360393.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.0
22gb|AC151913.1| Pan troglodytes chromosome X clone RP43-057B02 ma... 40 5.0
23gb|AC151912.1| Pan troglodytes chromosome X clone PTB-093M21 map... 40 5.0
24gb|CP000069.1| Trypanosoma brucei chromosome 6, complete sequence 40 5.0
25gb|AC009259.8| Trypanosoma brucei chromosome 6 clone RPCI93-4F7,... 40 5.0
26gb|AC133450.6| Oryza sativa chromosome 3 BAC OSJNBa0072F13 genom... 40 5.0
27ref|XM_460808.1| Debaryomyces hansenii CBS767 hypothetical prote... 40 5.0
28gb|AC118289.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.0
29gb|AY331258.1| Sphingomonas paucimobilis ORFA (orfA), ORFB (orfB... 40 5.0
30gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 5.0
31emb|Z97196.1|HS448E20 Human DNA sequence from clone RP3-448E20 o... 40 5.0
32gb|CP000316.1| Polaromonas sp. JS666, complete genome 40 5.0
33gb|AC092781.6| Oryza sativa chromosome 3 BAC OSJNBb0094O03 genom... 40 5.0
34emb|CR382138.1| Debaryomyces hansenii chromosome F of strain CBS... 40 5.0
35gb|CP000142.2| Pelobacter carbinolicus DSM 2380, complete genome 40 5.0
36emb|AL939115.1|SCO939115 Streptomyces coelicolor A3(2) complete ... 40 5.0
37dbj|AB193675.1| Arthroderma gypseum gene for 18S rRNA, ITS1, 5.8... 40 5.0
38dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.0
39dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.0
40dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.0
41dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.0
42dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 5.0
43gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 5.0
44dbj|AP004995.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.0
45dbj|AP004994.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.0
46emb|BX682229.4| Mouse DNA sequence from clone RP24-531M17 on chr... 40 5.0
47dbj|AP004041.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.0
48dbj|AB126048.1| Kitasatospora setae genes for homolog of putativ... 40 5.0
49dbj|AK111182.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.0
50dbj|AK106760.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.0
51tpe|BN000647.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-gr... 40 5.0
52gb|AF145039.1|AF145039 Streptomyces spectabilis aminotransferase... 40 5.0
53gb|AE015451.1| Pseudomonas putida KT2440 complete genome 40 5.0
54gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 40 5.0 
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 50/55 (90%)
 Strand = Plus / Minus

                                                                      
Query: 212     tcctcgcgctcttcacctgcgtgtccatgctcacggtcttctctacggcgcgcgc 266
               ||||||||||  |||||||||||||| ||||||| |||||||| |||||||||||
Sbjct: 3189740 tcctcgcgctgctcacctgcgtgtccctgctcaccgtcttctccacggcgcgcgc 3189686



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                         
Query: 352     gggctgccggcgtacgtgttcgacgc 377
               ||||||||||||||||||||||||||
Sbjct: 3189588 gggctgccggcgtacgtgttcgacgc 3189563



 Score = 44.1 bits (22), Expect = 0.32
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                     
Query: 85      gagatgaaggcaatgtcggggccgaagctgctcctcgt 122
               ||||||||||  ||||| ||||||||||||||| ||||
Sbjct: 3189909 gagatgaaggggatgtccgggccgaagctgctcgtcgt 3189872
to top
>dbj|AP004871.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0419H03
          Length = 129020

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 50/55 (90%)
 Strand = Plus / Minus

                                                                     
Query: 212    tcctcgcgctcttcacctgcgtgtccatgctcacggtcttctctacggcgcgcgc 266
              ||||||||||  |||||||||||||| ||||||| |||||||| |||||||||||
Sbjct: 117894 tcctcgcgctgctcacctgcgtgtccctgctcaccgtcttctccacggcgcgcgc 117840



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                        
Query: 352    gggctgccggcgtacgtgttcgacgc 377
              ||||||||||||||||||||||||||
Sbjct: 117742 gggctgccggcgtacgtgttcgacgc 117717



 Score = 44.1 bits (22), Expect = 0.32
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                    
Query: 85     gagatgaaggcaatgtcggggccgaagctgctcctcgt 122
              ||||||||||  ||||| ||||||||||||||| ||||
Sbjct: 118063 gagatgaaggggatgtccgggccgaagctgctcgtcgt 118026
to top
>dbj|AP004843.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:B1103G11
          Length = 182931

 Score = 69.9 bits (35), Expect = 6e-09
 Identities = 50/55 (90%)
 Strand = Plus / Minus

                                                                    
Query: 212   tcctcgcgctcttcacctgcgtgtccatgctcacggtcttctctacggcgcgcgc 266
             ||||||||||  |||||||||||||| ||||||| |||||||| |||||||||||
Sbjct: 61927 tcctcgcgctgctcacctgcgtgtccctgctcaccgtcttctccacggcgcgcgc 61873



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                       
Query: 352   gggctgccggcgtacgtgttcgacgc 377
             ||||||||||||||||||||||||||
Sbjct: 61775 gggctgccggcgtacgtgttcgacgc 61750



 Score = 44.1 bits (22), Expect = 0.32
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                   
Query: 85    gagatgaaggcaatgtcggggccgaagctgctcctcgt 122
             ||||||||||  ||||| ||||||||||||||| ||||
Sbjct: 62096 gagatgaaggggatgtccgggccgaagctgctcgtcgt 62059
to top
>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome
          Length = 6093698

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                        
Query: 325     gtcgtcggcgcctcggcgggcggcg 349
               |||||||||||||||||||||||||
Sbjct: 2834780 gtcgtcggcgcctcggcgggcggcg 2834804
to top
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence
          Length = 3694126

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 201     gctcgtcgtgttcctcgcgctc 222
               ||||||||||||||||||||||
Sbjct: 1767889 gctcgtcgtgttcctcgcgctc 1767910



 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 161     cgccggcgacggccgcgtcc 180
               ||||||||||||||||||||
Sbjct: 1493268 cgccggcgacggccgcgtcc 1493287
to top
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence
          Length = 4126292

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 201     gctcgtcgtgttcctcgcgctc 222
               ||||||||||||||||||||||
Sbjct: 2226364 gctcgtcgtgttcctcgcgctc 2226385
to top
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence
          Length = 4074542

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 201     gctcgtcgtgttcctcgcgctc 222
               ||||||||||||||||||||||
Sbjct: 2148325 gctcgtcgtgttcctcgcgctc 2148304
to top
>gb|AF072887.1|AF072887 Burkholderia pseudomallei regulator AmrR (amrR), putative membrane
            fusion protein AmrA (amrA), and putative transporter AmrB
            (amrB) genes, complete cds
          Length = 5137

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 201  gctcgtcgtgttcctcgcgctc 222
            ||||||||||||||||||||||
Sbjct: 4577 gctcgtcgtgttcctcgcgctc 4598
to top
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence
          Length = 3809201

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 201     gctcgtcgtgttcctcgcgctc 222
               ||||||||||||||||||||||
Sbjct: 2796647 gctcgtcgtgttcctcgcgctc 2796626
to top
>ref|NM_190715.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 561

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 156 ggtgtcgccggcgacggccgc 176
           |||||||||||||||||||||
Sbjct: 414 ggtgtcgccggcgacggccgc 434
to top
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome
          Length = 3188609

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                            
Query: 284     cgccgcgggccacgttcgcggccagcgcc 312
               ||||||||||||||  |||||||||||||
Sbjct: 2160194 cgccgcgggccacgaccgcggccagcgcc 2160222



 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 334    gcctcggcgggcggcggagg 353
              ||||||||||||||||||||
Sbjct: 504944 gcctcggcgggcggcggagg 504963
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 156      ggtgtcgccggcgacggccgc 176
                |||||||||||||||||||||
Sbjct: 37309242 ggtgtcgccggcgacggccgc 37309262
to top
>gb|AC148867.3| Monodelphis domestica clone VMRC6-379O2, complete sequence
          Length = 162030

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 69    ttgcctggggtagggagagatgaag 93
             ||||||||||| |||||||||||||
Sbjct: 32454 ttgcctggggtggggagagatgaag 32478
to top
>dbj|AP003611.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0423B08
          Length = 151490

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 156   ggtgtcgccggcgacggccgc 176
             |||||||||||||||||||||
Sbjct: 21276 ggtgtcgccggcgacggccgc 21296
to top
>dbj|AP003287.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0679C12
          Length = 153666

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 156    ggtgtcgccggcgacggccgc 176
              |||||||||||||||||||||
Sbjct: 146231 ggtgtcgccggcgacggccgc 146251
to top
>dbj|AK059299.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-025-F01, full
           insert sequence
          Length = 752

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 156 ggtgtcgccggcgacggccgc 176
           |||||||||||||||||||||
Sbjct: 485 ggtgtcgccggcgacggccgc 505
to top
>gb|DP000021.1| Monodelphis domestica target 1 genomic scaffold
          Length = 1833844

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 69     ttgcctggggtagggagagatgaag 93
              ||||||||||| |||||||||||||
Sbjct: 488415 ttgcctggggtggggagagatgaag 488439
to top
>emb|AL928681.5| Mouse DNA sequence from clone RP23-82M15 on chromosome 2, complete
             sequence
          Length = 125926

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 74    tggggtagggagagatgaagg 94
             |||||||||||||||||||||
Sbjct: 57357 tggggtagggagagatgaagg 57377
to top
>ref|XM_481433.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1134

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 327 cgtcggcgcctcggcgggcggcgg 350
           ||||||||||||||| ||||||||
Sbjct: 759 cgtcggcgcctcggccggcggcgg 782
to top
>ref|XM_475441.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1371

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 257 cggcgcgcgcgccgtccggg 276
           ||||||||||||||||||||
Sbjct: 379 cggcgcgcgcgccgtccggg 360
to top
>gb|AY360393.2| Oryza sativa (japonica cultivar-group) chromosome 8 BAC OSJNBa0096K16,
              complete sequence
          Length = 164501

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 327    cgtcggcgcctcggcgggcggcgg 350
              ||||||||||||||| ||||||||
Sbjct: 119141 cgtcggcgcctcggccggcggcgg 119164
to top
>gb|AC151913.1| Pan troglodytes chromosome X clone RP43-057B02 map human ortholog q26.2,
              complete sequence
          Length = 173886

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 76     gggtagggagagatgaaggc 95
              ||||||||||||||||||||
Sbjct: 163659 gggtagggagagatgaaggc 163678
to top
>gb|AC151912.1| Pan troglodytes chromosome X clone PTB-093M21 map human ortholog q26.2,
             complete sequence
          Length = 180904

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 76    gggtagggagagatgaaggc 95
             ||||||||||||||||||||
Sbjct: 50946 gggtagggagagatgaaggc 50965
to top
>gb|CP000069.1| Trypanosoma brucei chromosome 6, complete sequence
          Length = 1618915

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 5       catcacacacataaatggtg 24
               ||||||||||||||||||||
Sbjct: 1172570 catcacacacataaatggtg 1172589
to top
>gb|AC009259.8| Trypanosoma brucei chromosome 6 clone RPCI93-4F7, complete sequence
          Length = 153262

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 5     catcacacacataaatggtg 24
             ||||||||||||||||||||
Sbjct: 40984 catcacacacataaatggtg 40965
to top
>gb|AC133450.6| Oryza sativa chromosome 3 BAC OSJNBa0072F13 genomic sequence,
            complete sequence
          Length = 150743

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 76   gggtagggagagatgaaggcaatg 99
            |||||||||| |||||||||||||
Sbjct: 1788 gggtagggagtgatgaaggcaatg 1811
to top
>ref|XM_460808.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0F11165g)
            partial mRNA
          Length = 2217

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 20   tggtgtaacaaatacaggggcacaagaa 47
            |||||||||||||| ||||||| |||||
Sbjct: 1377 tggtgtaacaaatataggggcagaagaa 1350
to top
>gb|AC118289.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBb0099O15, complete sequence
          Length = 137357

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 257   cggcgcgcgcgccgtccggg 276
             ||||||||||||||||||||
Sbjct: 65554 cggcgcgcgcgccgtccggg 65535
to top
>gb|AY331258.1| Sphingomonas paucimobilis ORFA (orfA), ORFB (orfB), ORFC (orfC), ORFD
            (orfD), ORFE (orfE), ORFF (orfF), ORFG (orfG), ORFH
            (orfH), LinX1 (linX1), LinX2 (linX2), and LinA (linA)
            genes, complete cds; insertion sequence IS6100A, complete
            sequence; ORFJ' (orfJ') and ORFK (orfK) genes, complete
            cds; insertion sequence IS6100B, complete sequence; LinC
            (linC) gene, complete cds; insertion sequence IS6100C,
            complete sequence; and 'ORFN ('orfN), ORFO (orfO), ORFP
            (orfP), ORFQ (orfQ), ORFR (orfR), ORFS (orfS), ORFT
            (orfT), ORFU (orfU), ORFV (orfV), ORFW (orfW), ORFX
            (orfX), and ORFY (orfY) genes, complete cds
          Length = 41034

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 328  gtcggcgcctcggcgggcgg 347
            ||||||||||||||||||||
Sbjct: 6413 gtcggcgcctcggcgggcgg 6432
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 76       gggtagggagagatgaaggcaatg 99
                |||||||||| |||||||||||||
Sbjct: 31678879 gggtagggagtgatgaaggcaatg 31678856
to top
>emb|Z97196.1|HS448E20 Human DNA sequence from clone RP3-448E20 on chromosome Xq25-26.3,
             complete sequence
          Length = 88882

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 76    gggtagggagagatgaaggc 95
             ||||||||||||||||||||
Sbjct: 49720 gggtagggagagatgaaggc 49701
to top
>gb|CP000316.1| Polaromonas sp. JS666, complete genome
          Length = 5200264

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                                   
Query: 257     cggcgcgcgcgccgtccggggcggtgtcgccgcggg 292
               ||||||||||||||||| ||| | ||| ||||||||
Sbjct: 4037605 cggcgcgcgcgccgtcctgggtgctgtagccgcggg 4037570
to top
>gb|AC092781.6| Oryza sativa chromosome 3 BAC OSJNBb0094O03 genomic sequence,
            complete sequence
          Length = 134496

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 76   gggtagggagagatgaaggcaatg 99
            |||||||||| |||||||||||||
Sbjct: 4105 gggtagggagtgatgaaggcaatg 4082
to top
>emb|CR382138.1| Debaryomyces hansenii chromosome F of strain CBS767 of Debaryomyces
              hansenii
          Length = 2336804

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 20     tggtgtaacaaatacaggggcacaagaa 47
              |||||||||||||| ||||||| |||||
Sbjct: 892143 tggtgtaacaaatataggggcagaagaa 892170
to top
>gb|CP000142.2| Pelobacter carbinolicus DSM 2380, complete genome
          Length = 3665893

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 160     tcgccggcgacggccgcgtc 179
               ||||||||||||||||||||
Sbjct: 1000531 tcgccggcgacggccgcgtc 1000512
to top
>emb|AL939115.1|SCO939115 Streptomyces coelicolor A3(2) complete genome; segment 12/29
          Length = 276800

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                  
Query: 269    cgtccggggcggtgtcgccgcgggccacgttcgcgg 304
              ||||||||||| ||||||||  ||||| ||||||||
Sbjct: 259103 cgtccggggcgatgtcgccgaaggccatgttcgcgg 259138
to top
>dbj|AB193675.1| Arthroderma gypseum gene for 18S rRNA, ITS1, 5.8S rRNA, ITS2, 28S
           rRNA, partial and complete sequence, strain: IFM 40728
          Length = 961

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 269 cgtccggggcggtgtcgccg 288
           ||||||||||||||||||||
Sbjct: 64  cgtccggggcggtgtcgccg 83
to top
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 327      cgtcggcgcctcggcgggcggcgg 350
                ||||||||||||||| ||||||||
Sbjct: 12449826 cgtcggcgcctcggccggcggcgg 12449849
to top
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 270     gtccggggcggtgtcgccgc 289
               ||||||||||||||||||||
Sbjct: 7193280 gtccggggcggtgtcgccgc 7193299
to top
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 257      cggcgcgcgcgccgtccggg 276
                ||||||||||||||||||||
Sbjct: 23675549 cggcgcgcgcgccgtccggg 23675530
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 76       gggtagggagagatgaaggcaatg 99
                |||||||||| |||||||||||||
Sbjct: 31769395 gggtagggagtgatgaaggcaatg 31769372
to top
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 266     cgccgtccggggcggtgtcgccgc 289
               ||||||||| ||||||||||||||
Sbjct: 7414795 cgccgtccgcggcggtgtcgccgc 7414772
to top
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 257     cggcgcgcgcgccgtccggg 276
               ||||||||||||||||||||
Sbjct: 2277565 cggcgcgcgcgccgtccggg 2277546
to top
>dbj|AP004995.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0068B06
          Length = 143712

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 270   gtccggggcggtgtcgccgc 289
             ||||||||||||||||||||
Sbjct: 70691 gtccggggcggtgtcgccgc 70710
to top
>dbj|AP004994.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0052G07
          Length = 156207

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 270   gtccggggcggtgtcgccgc 289
             ||||||||||||||||||||
Sbjct: 28284 gtccggggcggtgtcgccgc 28303
to top
>emb|BX682229.4| Mouse DNA sequence from clone RP24-531M17 on chromosome 2, complete
             sequence
          Length = 57881

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 225   cacctgcgtgtccatgctca 244
             ||||||||||||||||||||
Sbjct: 10829 cacctgcgtgtccatgctca 10810
to top
>dbj|AP004041.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1115_A07
          Length = 165126

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 327   cgtcggcgcctcggcgggcggcgg 350
             ||||||||||||||| ||||||||
Sbjct: 53855 cgtcggcgcctcggccggcggcgg 53878
to top
>dbj|AB126048.1| Kitasatospora setae genes for homolog of putative metallopeptidase
            protein, hypothetical protein, ksbA, BarB homolog,
            putative RNA polymerase ECF-family sigma factor protein,
            homolog of methylated-DNA-protein-cysteine
            methyltransferase protein, partial and complete cds
          Length = 6997

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 258  ggcgcgcgcgccgtccgggg 277
            ||||||||||||||||||||
Sbjct: 2363 ggcgcgcgcgccgtccgggg 2344
to top
>dbj|AK111182.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-177-G04, full
           insert sequence
          Length = 1667

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 257 cggcgcgcgcgccgtccggg 276
           ||||||||||||||||||||
Sbjct: 412 cggcgcgcgcgccgtccggg 393
to top
>dbj|AK106760.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-115-D11, full
           insert sequence
          Length = 1505

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 327 cgtcggcgcctcggcgggcggcgg 350
           ||||||||||||||| ||||||||
Sbjct: 825 cgtcggcgcctcggccggcggcgg 848
to top
>tpe|BN000647.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) prx118 gene for
            class III peroxidase 118 precursor, exons 1-4
          Length = 1394

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 327  cgtcggcgcctcggcgggcggcgg 350
            ||||||||||||||| ||||||||
Sbjct: 1019 cgtcggcgcctcggccggcggcgg 1042
to top
>gb|AF145039.1|AF145039 Streptomyces spectabilis aminotransferase spcS1 (spcS1) and
            aminotransferase spcS2 (spcS2) genes, complete cds; and
            unknown genes
          Length = 5635

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 309  cgccggtgcgggcagcgtcg 328
            ||||||||||||||||||||
Sbjct: 4897 cgccggtgcgggcagcgtcg 4878
to top
>gb|AE015451.1| Pseudomonas putida KT2440 complete genome
          Length = 6181863

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 170    cggccgcgtccatgtccggc 189
              ||||||||||||||||||||
Sbjct: 987219 cggccgcgtccatgtccggc 987200
to top
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 330     cggcgcctcggcgggcggcg 349
               ||||||||||||||||||||
Sbjct: 4706300 cggcgcctcggcgggcggcg 4706319


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,522,301
Number of Sequences: 3902068
Number of extensions: 2522301
Number of successful extensions: 62075
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 59379
Number of HSP's gapped (non-prelim): 2696
length of query: 377
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 355
effective length of database: 17,147,199,772
effective search space: 6087255919060
effective search space used: 6087255919060
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top