ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart50g01 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_469026.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3574 Score = 214 bits (108), Expect = 2e-52 Identities = 180/204 (88%) Strand = Plus / Plus Query: 172 ggcgcgcccgagatgcgccccaacatcgtcacggaggctgggatttcaactaggttgaac 231 |||| |||||||||||| |||||| || ||||||||||||||||||||||||||||||| Sbjct: 213 ggcgagcccgagatgcggcccaacgtcatcacggaggctgggatttcaactaggttgaat 272 Query: 232 cagtggtggagcagcacaccgttcattacttccggcgttaccataatatgtgcggcgata 291 ||||||||| |||||| ||| |||||||| ||||| |||| | | ||||||| ||||| Sbjct: 273 cagtggtggggcagcataccattcattacatccggtgttatcttgatatgtggagcgatt 332 Query: 292 tatctggtgtgcttgttgattggatatgactcctatgccgagatatgcttcttgccttct 351 ||||||||||||||||||| ||| |||||||||| ||||||||||||||||||||||||| Sbjct: 333 tatctggtgtgcttgttgactggctatgactcctttgccgagatatgcttcttgccttct 392 Query: 352 gcagtggcctcacattttcaagtg 375 | ||| || |||| ||||||||| Sbjct: 393 gtagtagcatcacgctttcaagtg 416 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 74 ccccaaaaccctcgagatctc 94 ||||||||||||||||||||| Sbjct: 116 ccccaaaaccctcgagatctc 136
>dbj|AK100923.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023133P16, full insert sequence Length = 3574 Score = 214 bits (108), Expect = 2e-52 Identities = 180/204 (88%) Strand = Plus / Plus Query: 172 ggcgcgcccgagatgcgccccaacatcgtcacggaggctgggatttcaactaggttgaac 231 |||| |||||||||||| |||||| || ||||||||||||||||||||||||||||||| Sbjct: 213 ggcgagcccgagatgcggcccaacgtcatcacggaggctgggatttcaactaggttgaat 272 Query: 232 cagtggtggagcagcacaccgttcattacttccggcgttaccataatatgtgcggcgata 291 ||||||||| |||||| ||| |||||||| ||||| |||| | | ||||||| ||||| Sbjct: 273 cagtggtggggcagcataccattcattacatccggtgttatcttgatatgtggagcgatt 332 Query: 292 tatctggtgtgcttgttgattggatatgactcctatgccgagatatgcttcttgccttct 351 ||||||||||||||||||| ||| |||||||||| ||||||||||||||||||||||||| Sbjct: 333 tatctggtgtgcttgttgactggctatgactcctttgccgagatatgcttcttgccttct 392 Query: 352 gcagtggcctcacattttcaagtg 375 | ||| || |||| ||||||||| Sbjct: 393 gtagtagcatcacgctttcaagtg 416 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 74 ccccaaaaccctcgagatctc 94 ||||||||||||||||||||| Sbjct: 116 ccccaaaaccctcgagatctc 136
>ref|XM_469025.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1508 Score = 198 bits (100), Expect = 9e-48 Identities = 169/192 (88%) Strand = Plus / Plus Query: 184 atgcgccccaacatcgtcacggaggctgggatttcaactaggttgaaccagtggtggagc 243 ||||| |||||| || ||||||||||||||||||||||||||||||| ||||||||| || Sbjct: 1 atgcggcccaacgtcatcacggaggctgggatttcaactaggttgaatcagtggtggggc 60 Query: 244 agcacaccgttcattacttccggcgttaccataatatgtgcggcgatatatctggtgtgc 303 |||| ||| |||||||| ||||| |||| | | ||||||| ||||| |||||||||||| Sbjct: 61 agcataccattcattacatccggtgttatcttgatatgtggagcgatttatctggtgtgc 120 Query: 304 ttgttgattggatatgactcctatgccgagatatgcttcttgccttctgcagtggcctca 363 ||||||| ||| |||||||||| |||||||||||||||||||||||||| ||| || ||| Sbjct: 121 ttgttgactggctatgactcctttgccgagatatgcttcttgccttctgtagtagcatca 180 Query: 364 cattttcaagtg 375 | ||||||||| Sbjct: 181 cgctttcaagtg 192
>gb|AC145381.4| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0024K17 map near S16403, complete sequence Length = 172238 Score = 174 bits (88), Expect = 1e-40 Identities = 148/168 (88%) Strand = Plus / Minus Query: 206 aggctgggatttcaactaggttgaaccagtggtggagcagcacaccgttcattacttccg 265 ||||||||||||||||||||||||| ||||||||| |||||| ||| |||||||| |||| Sbjct: 115666 aggctgggatttcaactaggttgaatcagtggtggggcagcataccattcattacatccg 115607 Query: 266 gcgttaccataatatgtgcggcgatatatctggtgtgcttgttgattggatatgactcct 325 | |||| | | ||||||| ||||| ||||||||||||||||||| ||| |||||||||| Sbjct: 115606 gtgttatcttgatatgtggagcgatttatctggtgtgcttgttgactggctatgactcct 115547 Query: 326 atgccgagatatgcttcttgccttctgcagtggcctcacattttcaag 373 |||||||||||||||||||||||||| ||| || |||| ||||||| Sbjct: 115546 ttgccgagatatgcttcttgccttctgtagtagcatcacgctttcaag 115499 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 74 ccccaaaaccctcgagatctc 94 ||||||||||||||||||||| Sbjct: 116313 ccccaaaaccctcgagatctc 116293 Score = 42.1 bits (21), Expect = 1.3 Identities = 33/37 (89%) Strand = Plus / Minus Query: 172 ggcgcgcccgagatgcgccccaacatcgtcacggagg 208 |||| |||||||||||| |||||| || ||||||||| Sbjct: 116216 ggcgagcccgagatgcggcccaacgtcatcacggagg 116180
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 174 bits (88), Expect = 1e-40 Identities = 148/168 (88%) Strand = Plus / Minus Query: 206 aggctgggatttcaactaggttgaaccagtggtggagcagcacaccgttcattacttccg 265 ||||||||||||||||||||||||| ||||||||| |||||| ||| |||||||| |||| Sbjct: 24999221 aggctgggatttcaactaggttgaatcagtggtggggcagcataccattcattacatccg 24999162 Query: 266 gcgttaccataatatgtgcggcgatatatctggtgtgcttgttgattggatatgactcct 325 | |||| | | ||||||| ||||| ||||||||||||||||||| ||| |||||||||| Sbjct: 24999161 gtgttatcttgatatgtggagcgatttatctggtgtgcttgttgactggctatgactcct 24999102 Query: 326 atgccgagatatgcttcttgccttctgcagtggcctcacattttcaag 373 |||||||||||||||||||||||||| ||| || |||| ||||||| Sbjct: 24999101 ttgccgagatatgcttcttgccttctgtagtagcatcacgctttcaag 24999054 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 74 ccccaaaaccctcgagatctc 94 ||||||||||||||||||||| Sbjct: 24999868 ccccaaaaccctcgagatctc 24999848 Score = 42.1 bits (21), Expect = 1.3 Identities = 33/37 (89%) Strand = Plus / Minus Query: 172 ggcgcgcccgagatgcgccccaacatcgtcacggagg 208 |||| |||||||||||| |||||| || ||||||||| Sbjct: 24999771 ggcgagcccgagatgcggcccaacgtcatcacggagg 24999735
>gb|AC138001.2| Oryza sativa chromosome 3 BAC OSJNBa0093M23 genomic sequence, complete sequence Length = 170020 Score = 174 bits (88), Expect = 1e-40 Identities = 148/168 (88%) Strand = Plus / Minus Query: 206 aggctgggatttcaactaggttgaaccagtggtggagcagcacaccgttcattacttccg 265 ||||||||||||||||||||||||| ||||||||| |||||| ||| |||||||| |||| Sbjct: 31028 aggctgggatttcaactaggttgaatcagtggtggggcagcataccattcattacatccg 30969 Query: 266 gcgttaccataatatgtgcggcgatatatctggtgtgcttgttgattggatatgactcct 325 | |||| | | ||||||| ||||| ||||||||||||||||||| ||| |||||||||| Sbjct: 30968 gtgttatcttgatatgtggagcgatttatctggtgtgcttgttgactggctatgactcct 30909 Query: 326 atgccgagatatgcttcttgccttctgcagtggcctcacattttcaag 373 |||||||||||||||||||||||||| ||| || |||| ||||||| Sbjct: 30908 ttgccgagatatgcttcttgccttctgtagtagcatcacgctttcaag 30861 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 74 ccccaaaaccctcgagatctc 94 ||||||||||||||||||||| Sbjct: 31675 ccccaaaaccctcgagatctc 31655 Score = 42.1 bits (21), Expect = 1.3 Identities = 33/37 (89%) Strand = Plus / Minus Query: 172 ggcgcgcccgagatgcgccccaacatcgtcacggagg 208 |||| |||||||||||| |||||| || ||||||||| Sbjct: 31578 ggcgagcccgagatgcggcccaacgtcatcacggagg 31542
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 174 bits (88), Expect = 1e-40 Identities = 148/168 (88%) Strand = Plus / Minus Query: 206 aggctgggatttcaactaggttgaaccagtggtggagcagcacaccgttcattacttccg 265 ||||||||||||||||||||||||| ||||||||| |||||| ||| |||||||| |||| Sbjct: 25090538 aggctgggatttcaactaggttgaatcagtggtggggcagcataccattcattacatccg 25090479 Query: 266 gcgttaccataatatgtgcggcgatatatctggtgtgcttgttgattggatatgactcct 325 | |||| | | ||||||| ||||| ||||||||||||||||||| ||| |||||||||| Sbjct: 25090478 gtgttatcttgatatgtggagcgatttatctggtgtgcttgttgactggctatgactcct 25090419 Query: 326 atgccgagatatgcttcttgccttctgcagtggcctcacattttcaag 373 |||||||||||||||||||||||||| ||| || |||| ||||||| Sbjct: 25090418 ttgccgagatatgcttcttgccttctgtagtagcatcacgctttcaag 25090371 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 74 ccccaaaaccctcgagatctc 94 ||||||||||||||||||||| Sbjct: 25091185 ccccaaaaccctcgagatctc 25091165 Score = 42.1 bits (21), Expect = 1.3 Identities = 33/37 (89%) Strand = Plus / Minus Query: 172 ggcgcgcccgagatgcgccccaacatcgtcacggagg 208 |||| |||||||||||| |||||| || ||||||||| Sbjct: 25091088 ggcgagcccgagatgcggcccaacgtcatcacggagg 25091052
>ref|XM_469027.1| Oryza sativa (japonica cultivar-group), mRNA Length = 660 Score = 42.1 bits (21), Expect = 1.3 Identities = 33/37 (89%) Strand = Plus / Minus Query: 172 ggcgcgcccgagatgcgccccaacatcgtcacggagg 208 |||| |||||||||||| |||||| || ||||||||| Sbjct: 104 ggcgagcccgagatgcggcccaacgtcatcacggagg 68
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 42.1 bits (21), Expect = 1.3 Identities = 27/29 (93%) Strand = Plus / Plus Query: 149 ccggcggagccaccagcacctgcggcgcg 177 ||||||||||||||| |||| |||||||| Sbjct: 3551446 ccggcggagccaccaccaccggcggcgcg 3551474
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 56 cgaggtcgcggccggcggccc 76 ||||||||||||||||||||| Sbjct: 4742851 cgaggtcgcggccggcggccc 4742831
>emb|AL833796.4| Mouse DNA sequence from clone RP23-361A12 on chromosome X, complete sequence Length = 160626 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 331 gagatatgcttcttgccttct 351 ||||||||||||||||||||| Sbjct: 136306 gagatatgcttcttgccttct 136286
>gb|AC168852.2| Mus musculus BAC clone RP24-191L21 from chromosome 6, complete sequence Length = 171677 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 111 ctccacagataccccaacct 130 |||||||||||||||||||| Sbjct: 138723 ctccacagataccccaacct 138704
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome Length = 3345170 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 158 ccaccagcacctgcggcgcgcccg 181 ||||||||||||||||||| |||| Sbjct: 972219 ccaccagcacctgcggcgcacccg 972196
>ref|XM_652929.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN0417.2), mRNA Length = 753 Score = 40.1 bits (20), Expect = 5.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 154 ggagccaccagcacctgcggcgcg 177 ||||||||||||||| |||||||| Sbjct: 228 ggagccaccagcaccggcggcgcg 205
>gb|AY356314.1| Solanum tuberosum L362 gene, complete sequence Length = 6730 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 336 atgcttcttgccttctgcag 355 |||||||||||||||||||| Sbjct: 6274 atgcttcttgccttctgcag 6255
>gb|BC107546.1| Bos taurus cDNA clone MGC:128624 IMAGE:7986344, complete cds Length = 2172 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 144 ccggcccggcggagccacca 163 |||||||||||||||||||| Sbjct: 1144 ccggcccggcggagccacca 1163
>gb|AC008134.3| Homo sapiens 3q26.2-27 BAC RPCI11-263C16 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 175132 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 36 ggcacatttcttcttcttcc 55 |||||||||||||||||||| Sbjct: 49338 ggcacatttcttcttcttcc 49357
>gb|AC158999.2| Mus musculus BAC clone RP24-201N16 from chromosome 9, complete sequence Length = 169860 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 334 atatgcttcttgccttctgc 353 |||||||||||||||||||| Sbjct: 129459 atatgcttcttgccttctgc 129478
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 5.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 289 atatatctggtgtgcttgttgattggat 316 |||||||| || |||||||||||||||| Sbjct: 26331019 atatatctagtttgcttgttgattggat 26331046
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 5.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 55 ccgaggtcgcggccggcggc 74 |||||||||||||||||||| Sbjct: 1912705 ccgaggtcgcggccggcggc 1912686
>dbj|AP003752.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1332_C12 Length = 67349 Score = 40.1 bits (20), Expect = 5.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 289 atatatctggtgtgcttgttgattggat 316 |||||||| || |||||||||||||||| Sbjct: 50597 atatatctagtttgcttgttgattggat 50624
>dbj|AK121733.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033083C10, full insert sequence Length = 1914 Score = 40.1 bits (20), Expect = 5.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 289 atatatctggtgtgcttgttgattggat 316 |||||||| || |||||||||||||||| Sbjct: 1871 atatatctagtttgcttgttgattggat 1898 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,725,616 Number of Sequences: 3902068 Number of extensions: 3725616 Number of successful extensions: 79886 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 23 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 79446 Number of HSP's gapped (non-prelim): 440 length of query: 375 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 353 effective length of database: 17,147,199,772 effective search space: 6052961519516 effective search space used: 6052961519516 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
