ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart50f10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AL607001.4|OSJN00128 Oryza sativa genomic DNA, chromosome 4,... 46 0.012
2dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.012
3emb|BX932979.1| Gallus gallus finished cDNA, clone ChEST992k22 40 0.75
4emb|BX932198.1| Gallus gallus finished cDNA, clone ChEST360m6 40 0.75
5ref|XM_863695.1| PREDICTED: Canis familiaris hypothetical protei... 38 3.0
6dbj|AB076237.1| Zamia pumila gene for 18S rRNA, ITS1, 5.8S rRNA,... 38 3.0
7dbj|AK031661.1| Mus musculus 13 days embryo male testis cDNA, RI... 38 3.0
8gb|AC116680.21| Mus musculus chromosome 12, clone RP23-476M16, c... 38 3.0
9emb|CT010478.15| Mouse DNA sequence from clone RP23-356E7 on chr... 38 3.0

>emb|AL607001.4|OSJN00128 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0088I22,
             complete sequence
          Length = 164572

 Score = 46.1 bits (23), Expect = 0.012
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 12    ttctcacactccaaaaccctcct 34
             |||||||||||||||||||||||
Sbjct: 72955 ttctcacactccaaaaccctcct 72977



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 46.1 bits (23), Expect = 0.012
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                       
Query: 12       ttctcacactccaaaaccctcct 34
                |||||||||||||||||||||||
Sbjct: 28718003 ttctcacactccaaaaccctcct 28717981



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>emb|BX932979.1| Gallus gallus finished cDNA, clone ChEST992k22
          Length = 1264

 Score = 40.1 bits (20), Expect = 0.75
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 6   gtccatttctcacactccaa 25
           ||||||||||||||||||||
Sbjct: 165 gtccatttctcacactccaa 146



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>emb|BX932198.1| Gallus gallus finished cDNA, clone ChEST360m6
          Length = 528

 Score = 40.1 bits (20), Expect = 0.75
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 6   gtccatttctcacactccaa 25
           ||||||||||||||||||||
Sbjct: 175 gtccatttctcacactccaa 156



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>ref|XM_863695.1| PREDICTED: Canis familiaris hypothetical protein LOC612730
           (LOC612730), mRNA
          Length = 672

 Score = 38.2 bits (19), Expect = 3.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 37  ccggcctcccacgcacacg 55
           |||||||||||||||||||
Sbjct: 578 ccggcctcccacgcacacg 596



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>dbj|AB076237.1| Zamia pumila gene for 18S rRNA, ITS1, 5.8S rRNA, ITS2, 26S rRNA,
            partial and complete sequence
          Length = 1134

 Score = 38.2 bits (19), Expect = 3.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 3    cgcgtccatttctcacact 21
            |||||||||||||||||||
Sbjct: 1035 cgcgtccatttctcacact 1017



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>dbj|AK031661.1| Mus musculus 13 days embryo male testis cDNA, RIKEN full-length
            enriched library, clone:6030474M11
            product:unclassifiable, full insert sequence
          Length = 3774

 Score = 38.2 bits (19), Expect = 3.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 35   agccggcctcccacgcacacgcc 57
            |||| ||||||||||||||||||
Sbjct: 1072 agccagcctcccacgcacacgcc 1050



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>gb|AC116680.21| Mus musculus chromosome 12, clone RP23-476M16, complete sequence
          Length = 215303

 Score = 38.2 bits (19), Expect = 3.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 35     agccggcctcccacgcacacgcc 57
              |||| ||||||||||||||||||
Sbjct: 112484 agccagcctcccacgcacacgcc 112462



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>emb|CT010478.15| Mouse DNA sequence from clone RP23-356E7 on chromosome 12, complete
              sequence
          Length = 190917

 Score = 38.2 bits (19), Expect = 3.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 35     agccggcctcccacgcacacgcc 57
              |||| ||||||||||||||||||
Sbjct: 141129 agccagcctcccacgcacacgcc 141107


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 419,211
Number of Sequences: 3902068
Number of extensions: 419211
Number of successful extensions: 24460
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 24439
Number of HSP's gapped (non-prelim): 21
length of query: 74
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 53
effective length of database: 17,151,101,840
effective search space: 909008397520
effective search space used: 909008397520
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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