Clone Name | bart50f08 |
---|---|
Clone Library Name | barley_pub |
>emb|AJ422119.1|TAE422119 Triticum aestivum mRNA for xylanase inhibitor protein I (xipI gene) Length = 915 Score = 83.8 bits (42), Expect = 9e-14 Identities = 78/90 (86%) Strand = Plus / Plus Query: 1 ggcgccgatcccaccctggaggccagcggggctcctacccctcctctccgtcgccgctgc 60 ||||||| || || || |||||||||| | ||||| ||||||||||||||||||| || Sbjct: 3 ggcgccgctcgcagcccggaggccagcctgcctcctggccctcctctccgtcgccgcggc 62 Query: 61 cttattcctaaccccgccggccttggcggc 90 ||||||||| |||||| ||||||||||||| Sbjct: 63 cttattcctgaccccgacggccttggcggc 92
>gb|AC137004.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0615D12, complete sequence Length = 155402 Score = 42.1 bits (21), Expect = 0.29 Identities = 24/25 (96%) Strand = Plus / Minus Query: 39 ccctcctctccgtcgccgctgcctt 63 |||||||||||||| |||||||||| Sbjct: 85617 ccctcctctccgtctccgctgcctt 85593
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 42.1 bits (21), Expect = 0.29 Identities = 24/25 (96%) Strand = Plus / Minus Query: 39 ccctcctctccgtcgccgctgcctt 63 |||||||||||||| |||||||||| Sbjct: 21694441 ccctcctctccgtctccgctgcctt 21694417 Score = 40.1 bits (20), Expect = 1.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 38 cccctcctctccgtcgccgctgcc 61 ||||||| |||||||||||||||| Sbjct: 20913483 cccctccgctccgtcgccgctgcc 20913506
>gb|AC130600.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0048I21, complete sequence Length = 137650 Score = 40.1 bits (20), Expect = 1.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 38 cccctcctctccgtcgccgctgcc 61 ||||||| |||||||||||||||| Sbjct: 40261 cccctccgctccgtcgccgctgcc 40284
>ref|XM_869724.1| PREDICTED: Bos taurus similar to eukaryotic translation elongation factor 1 beta 2 (LOC617459), mRNA Length = 432 Score = 40.1 bits (20), Expect = 1.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 15 cctggaggccagcggggctc 34 |||||||||||||||||||| Sbjct: 40 cctggaggccagcggggctc 21
>gb|AC135429.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0636F09, complete sequence Length = 177374 Score = 40.1 bits (20), Expect = 1.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 38 cccctcctctccgtcgccgctgcc 61 ||||||| |||||||||||||||| Sbjct: 169284 cccctccgctccgtcgccgctgcc 169307
>gb|AC110619.3| Homo sapiens BAC clone RP11-649N20 from 2, complete sequence Length = 161830 Score = 40.1 bits (20), Expect = 1.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 8 atcccaccctggaggccagc 27 |||||||||||||||||||| Sbjct: 76057 atcccaccctggaggccagc 76038
>gb|AC149683.2| Bos taurus BAC CH240-493H15 (Children's Hospital Oakland Research Institute Bovine BAC Library (male)) complete sequence Length = 176832 Score = 38.2 bits (19), Expect = 4.5 Identities = 25/27 (92%) Strand = Plus / Plus Query: 18 ggaggccagcggggctcctacccctcc 44 |||| ||||||||||||| |||||||| Sbjct: 30258 ggagaccagcggggctcccacccctcc 30284
>gb|AC096689.5| Oryza sativa chromosome 3 BAC OSJNBa0027J18 genomic sequence, complete sequence Length = 112892 Score = 38.2 bits (19), Expect = 4.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 39 ccctcctctccgtcgccgc 57 ||||||||||||||||||| Sbjct: 17000 ccctcctctccgtcgccgc 16982
>ref|XM_865020.1| PREDICTED: Bos taurus similar to eukaryotic translation elongation factor 1 beta 2 (LOC613846), mRNA Length = 459 Score = 38.2 bits (19), Expect = 4.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 15 cctggaggccagcggggct 33 ||||||||||||||||||| Sbjct: 40 cctggaggccagcggggct 22
>gb|AC121328.3| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBb0030E22, complete sequence Length = 135468 Score = 38.2 bits (19), Expect = 4.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 39 ccctcctctccgtcgccgc 57 ||||||||||||||||||| Sbjct: 34536 ccctcctctccgtcgccgc 34554
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 38.2 bits (19), Expect = 4.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 39 ccctcctctccgtcgccgc 57 ||||||||||||||||||| Sbjct: 29832461 ccctcctctccgtcgccgc 29832479
>emb|AL939120.1|SCO939120 Streptomyces coelicolor A3(2) complete genome; segment 17/29 Length = 248550 Score = 38.2 bits (19), Expect = 4.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 72 ccccgccggccttggcggc 90 ||||||||||||||||||| Sbjct: 110616 ccccgccggccttggcggc 110634
>gb|BC102548.1| Bos taurus cDNA clone IMAGE:30957872, containing frame-shift errors Length = 776 Score = 38.2 bits (19), Expect = 4.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 15 cctggaggccagcggggct 33 ||||||||||||||||||| Sbjct: 61 cctggaggccagcggggct 43
>gb|AC013356.8|AC013356 Homo sapiens chromosome 15 clone RP11-64K12 map 15q14, complete sequence Length = 176910 Score = 38.2 bits (19), Expect = 4.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 30 ggctcctacccctcctctc 48 ||||||||||||||||||| Sbjct: 44415 ggctcctacccctcctctc 44433
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 38.2 bits (19), Expect = 4.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 39 ccctcctctccgtcgccgc 57 ||||||||||||||||||| Sbjct: 22477391 ccctcctctccgtcgccgc 22477409
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 38.2 bits (19), Expect = 4.5 Identities = 22/23 (95%) Strand = Plus / Plus Query: 39 ccctcctctccgtcgccgctgcc 61 |||||||||| |||||||||||| Sbjct: 12087191 ccctcctctcggtcgccgctgcc 12087213 Score = 38.2 bits (19), Expect = 4.5 Identities = 22/23 (95%) Strand = Plus / Plus Query: 39 ccctcctctccgtcgccgctgcc 61 |||||||||| |||||||||||| Sbjct: 12076418 ccctcctctcggtcgccgctgcc 12076440
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 38.2 bits (19), Expect = 4.5 Identities = 22/23 (95%) Strand = Plus / Minus Query: 39 ccctcctctccgtcgccgctgcc 61 |||||||||||| |||||||||| Sbjct: 16486935 ccctcctctccgccgccgctgcc 16486913
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 38.2 bits (19), Expect = 4.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 38 cccctcctctccgtcgccg 56 ||||||||||||||||||| Sbjct: 7966325 cccctcctctccgtcgccg 7966307
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 38.2 bits (19), Expect = 4.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 39 ccctcctctccgtcgccgc 57 ||||||||||||||||||| Sbjct: 29923883 ccctcctctccgtcgccgc 29923901
>ref|NM_001014936.1| Bos taurus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA Length = 821 Score = 38.2 bits (19), Expect = 4.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 15 cctggaggccagcggggct 33 ||||||||||||||||||| Sbjct: 140 cctggaggccagcggggct 122
>gb|AY911340.1| Bos taurus clone IMAGE:7961479 eukaryotic translation elongation factor 1 beta 2-like mRNA, complete cds Length = 818 Score = 38.2 bits (19), Expect = 4.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 15 cctggaggccagcggggct 33 ||||||||||||||||||| Sbjct: 136 cctggaggccagcggggct 118
>dbj|AP005448.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0404G11 Length = 167623 Score = 38.2 bits (19), Expect = 4.5 Identities = 22/23 (95%) Strand = Plus / Minus Query: 39 ccctcctctccgtcgccgctgcc 61 |||||||||||| |||||||||| Sbjct: 127726 ccctcctctccgccgccgctgcc 127704
>dbj|AP005518.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0046H10 Length = 155544 Score = 38.2 bits (19), Expect = 4.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 38 cccctcctctccgtcgccg 56 ||||||||||||||||||| Sbjct: 73843 cccctcctctccgtcgccg 73825
>dbj|AP005305.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0024C06 Length = 177529 Score = 38.2 bits (19), Expect = 4.5 Identities = 22/23 (95%) Strand = Plus / Plus Query: 39 ccctcctctccgtcgccgctgcc 61 |||||||||| |||||||||||| Sbjct: 138686 ccctcctctcggtcgccgctgcc 138708 Score = 38.2 bits (19), Expect = 4.5 Identities = 22/23 (95%) Strand = Plus / Plus Query: 39 ccctcctctccgtcgccgctgcc 61 |||||||||| |||||||||||| Sbjct: 127913 ccctcctctcggtcgccgctgcc 127935
>dbj|AP005843.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBb0024C16 Length = 137779 Score = 38.2 bits (19), Expect = 4.5 Identities = 22/23 (95%) Strand = Plus / Plus Query: 39 ccctcctctccgtcgccgctgcc 61 |||||||||| |||||||||||| Sbjct: 84325 ccctcctctcggtcgccgctgcc 84347 Score = 38.2 bits (19), Expect = 4.5 Identities = 22/23 (95%) Strand = Plus / Plus Query: 39 ccctcctctccgtcgccgctgcc 61 |||||||||| |||||||||||| Sbjct: 73552 ccctcctctcggtcgccgctgcc 73574
>dbj|AK068575.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013156N24, full insert sequence Length = 2050 Score = 38.2 bits (19), Expect = 4.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 39 ccctcctctccgtcgccgc 57 ||||||||||||||||||| Sbjct: 61 ccctcctctccgtcgccgc 79
>gb|AC016968.24| Homo sapiens 3 BAC RP11-59J16 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 152586 Score = 38.2 bits (19), Expect = 4.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 10 cccaccctggaggccagcg 28 ||||||||||||||||||| Sbjct: 139469 cccaccctggaggccagcg 139487
>gb|BT021037.1| Bos taurus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA, complete cds Length = 821 Score = 38.2 bits (19), Expect = 4.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 15 cctggaggccagcggggct 33 ||||||||||||||||||| Sbjct: 140 cctggaggccagcggggct 122
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 38.2 bits (19), Expect = 4.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 39 ccctcctctccgtcgccgc 57 ||||||||||||||||||| Sbjct: 22787302 ccctcctctccgtcgccgc 22787320 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 643,084 Number of Sequences: 3902068 Number of extensions: 643084 Number of successful extensions: 51044 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 30 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 50729 Number of HSP's gapped (non-prelim): 315 length of query: 102 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 81 effective length of database: 17,151,101,840 effective search space: 1389239249040 effective search space used: 1389239249040 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)