ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart50f08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AJ422119.1|TAE422119 Triticum aestivum mRNA for xylanase inh... 84 9e-14
2gb|AC137004.2| Oryza sativa (japonica cultivar-group) chromosome... 42 0.29
3dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.29
4gb|AC130600.3| Oryza sativa (japonica cultivar-group) chromosome... 40 1.1
5ref|XM_869724.1| PREDICTED: Bos taurus similar to eukaryotic tra... 40 1.1
6gb|AC135429.2| Oryza sativa (japonica cultivar-group) chromosome... 40 1.1
7gb|AC110619.3| Homo sapiens BAC clone RP11-649N20 from 2, comple... 40 1.1
8gb|AC149683.2| Bos taurus BAC CH240-493H15 (Children's Hospital... 38 4.5
9gb|AC096689.5| Oryza sativa chromosome 3 BAC OSJNBa0027J18 genom... 38 4.5
10ref|XM_865020.1| PREDICTED: Bos taurus similar to eukaryotic tra... 38 4.5
11gb|AC121328.3| Oryza sativa (japonica cultivar-group) chromosome... 38 4.5
12gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 38 4.5
13emb|AL939120.1|SCO939120 Streptomyces coelicolor A3(2) complete ... 38 4.5
14gb|BC102548.1| Bos taurus cDNA clone IMAGE:30957872, containing ... 38 4.5
15gb|AC013356.8|AC013356 Homo sapiens chromosome 15 clone RP11-64K... 38 4.5
16dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 38 4.5
17dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 38 4.5
18dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 38 4.5
19dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 38 4.5
20dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 38 4.5
21ref|NM_001014936.1| Bos taurus eukaryotic translation elongation... 38 4.5
22gb|AY911340.1| Bos taurus clone IMAGE:7961479 eukaryotic transla... 38 4.5
23dbj|AP005448.5| Oryza sativa (japonica cultivar-group) genomic D... 38 4.5
24dbj|AP005518.3| Oryza sativa (japonica cultivar-group) genomic D... 38 4.5
25dbj|AP005305.3| Oryza sativa (japonica cultivar-group) genomic D... 38 4.5
26dbj|AP005843.2| Oryza sativa (japonica cultivar-group) genomic D... 38 4.5
27dbj|AK068575.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 4.5
28gb|AC016968.24| Homo sapiens 3 BAC RP11-59J16 (Roswell Park Canc... 38 4.5
29gb|BT021037.1| Bos taurus eukaryotic translation elongation fact... 38 4.5
30gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 38 4.5

>emb|AJ422119.1|TAE422119 Triticum aestivum mRNA for xylanase inhibitor protein I (xipI
          gene)
          Length = 915

 Score = 83.8 bits (42), Expect = 9e-14
 Identities = 78/90 (86%)
 Strand = Plus / Plus

                                                                      
Query: 1  ggcgccgatcccaccctggaggccagcggggctcctacccctcctctccgtcgccgctgc 60
          ||||||| || || || ||||||||||  | |||||  ||||||||||||||||||| ||
Sbjct: 3  ggcgccgctcgcagcccggaggccagcctgcctcctggccctcctctccgtcgccgcggc 62

                                        
Query: 61 cttattcctaaccccgccggccttggcggc 90
          ||||||||| |||||| |||||||||||||
Sbjct: 63 cttattcctgaccccgacggccttggcggc 92



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>gb|AC137004.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0615D12,
             complete sequence
          Length = 155402

 Score = 42.1 bits (21), Expect = 0.29
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 39    ccctcctctccgtcgccgctgcctt 63
             |||||||||||||| ||||||||||
Sbjct: 85617 ccctcctctccgtctccgctgcctt 85593



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 42.1 bits (21), Expect = 0.29
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 39       ccctcctctccgtcgccgctgcctt 63
                |||||||||||||| ||||||||||
Sbjct: 21694441 ccctcctctccgtctccgctgcctt 21694417



 Score = 40.1 bits (20), Expect = 1.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 38       cccctcctctccgtcgccgctgcc 61
                ||||||| ||||||||||||||||
Sbjct: 20913483 cccctccgctccgtcgccgctgcc 20913506



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>gb|AC130600.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBb0048I21, complete sequence
          Length = 137650

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 38    cccctcctctccgtcgccgctgcc 61
             ||||||| ||||||||||||||||
Sbjct: 40261 cccctccgctccgtcgccgctgcc 40284



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>ref|XM_869724.1| PREDICTED: Bos taurus similar to eukaryotic translation
          elongation factor 1 beta 2 (LOC617459), mRNA
          Length = 432

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                              
Query: 15 cctggaggccagcggggctc 34
          ||||||||||||||||||||
Sbjct: 40 cctggaggccagcggggctc 21



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>gb|AC135429.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0636F09,
              complete sequence
          Length = 177374

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 38     cccctcctctccgtcgccgctgcc 61
              ||||||| ||||||||||||||||
Sbjct: 169284 cccctccgctccgtcgccgctgcc 169307



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>gb|AC110619.3| Homo sapiens BAC clone RP11-649N20 from 2, complete sequence
          Length = 161830

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 8     atcccaccctggaggccagc 27
             ||||||||||||||||||||
Sbjct: 76057 atcccaccctggaggccagc 76038



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>gb|AC149683.2| Bos taurus  BAC CH240-493H15 (Children's Hospital Oakland Research
             Institute Bovine BAC Library (male)) complete sequence
          Length = 176832

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                        
Query: 18    ggaggccagcggggctcctacccctcc 44
             |||| ||||||||||||| ||||||||
Sbjct: 30258 ggagaccagcggggctcccacccctcc 30284



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>gb|AC096689.5| Oryza sativa chromosome 3 BAC OSJNBa0027J18 genomic sequence, complete
             sequence
          Length = 112892

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 39    ccctcctctccgtcgccgc 57
             |||||||||||||||||||
Sbjct: 17000 ccctcctctccgtcgccgc 16982



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>ref|XM_865020.1| PREDICTED: Bos taurus similar to eukaryotic translation
          elongation factor 1 beta 2 (LOC613846), mRNA
          Length = 459

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                             
Query: 15 cctggaggccagcggggct 33
          |||||||||||||||||||
Sbjct: 40 cctggaggccagcggggct 22



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>gb|AC121328.3| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBb0030E22, complete sequence
          Length = 135468

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 39    ccctcctctccgtcgccgc 57
             |||||||||||||||||||
Sbjct: 34536 ccctcctctccgtcgccgc 34554



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 39       ccctcctctccgtcgccgc 57
                |||||||||||||||||||
Sbjct: 29832461 ccctcctctccgtcgccgc 29832479



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>emb|AL939120.1|SCO939120 Streptomyces coelicolor A3(2) complete genome; segment 17/29
          Length = 248550

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 72     ccccgccggccttggcggc 90
              |||||||||||||||||||
Sbjct: 110616 ccccgccggccttggcggc 110634



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>gb|BC102548.1| Bos taurus cDNA clone IMAGE:30957872, containing frame-shift
          errors
          Length = 776

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                             
Query: 15 cctggaggccagcggggct 33
          |||||||||||||||||||
Sbjct: 61 cctggaggccagcggggct 43



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>gb|AC013356.8|AC013356 Homo sapiens chromosome 15 clone RP11-64K12 map 15q14, complete
             sequence
          Length = 176910

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 30    ggctcctacccctcctctc 48
             |||||||||||||||||||
Sbjct: 44415 ggctcctacccctcctctc 44433



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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 39       ccctcctctccgtcgccgc 57
                |||||||||||||||||||
Sbjct: 22477391 ccctcctctccgtcgccgc 22477409



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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                       
Query: 39       ccctcctctccgtcgccgctgcc 61
                |||||||||| ||||||||||||
Sbjct: 12087191 ccctcctctcggtcgccgctgcc 12087213



 Score = 38.2 bits (19), Expect = 4.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                       
Query: 39       ccctcctctccgtcgccgctgcc 61
                |||||||||| ||||||||||||
Sbjct: 12076418 ccctcctctcggtcgccgctgcc 12076440



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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                       
Query: 39       ccctcctctccgtcgccgctgcc 61
                |||||||||||| ||||||||||
Sbjct: 16486935 ccctcctctccgccgccgctgcc 16486913



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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 38      cccctcctctccgtcgccg 56
               |||||||||||||||||||
Sbjct: 7966325 cccctcctctccgtcgccg 7966307



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 39       ccctcctctccgtcgccgc 57
                |||||||||||||||||||
Sbjct: 29923883 ccctcctctccgtcgccgc 29923901



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>ref|NM_001014936.1| Bos taurus eukaryotic translation elongation factor 1 beta 2
           (EEF1B2), mRNA
          Length = 821

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 15  cctggaggccagcggggct 33
           |||||||||||||||||||
Sbjct: 140 cctggaggccagcggggct 122



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>gb|AY911340.1| Bos taurus clone IMAGE:7961479 eukaryotic translation elongation
           factor 1 beta 2-like mRNA, complete cds
          Length = 818

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 15  cctggaggccagcggggct 33
           |||||||||||||||||||
Sbjct: 136 cctggaggccagcggggct 118



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>dbj|AP005448.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0404G11
          Length = 167623

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 39     ccctcctctccgtcgccgctgcc 61
              |||||||||||| ||||||||||
Sbjct: 127726 ccctcctctccgccgccgctgcc 127704



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>dbj|AP005518.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0046H10
          Length = 155544

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 38    cccctcctctccgtcgccg 56
             |||||||||||||||||||
Sbjct: 73843 cccctcctctccgtcgccg 73825



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>dbj|AP005305.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0024C06
          Length = 177529

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 39     ccctcctctccgtcgccgctgcc 61
              |||||||||| ||||||||||||
Sbjct: 138686 ccctcctctcggtcgccgctgcc 138708



 Score = 38.2 bits (19), Expect = 4.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 39     ccctcctctccgtcgccgctgcc 61
              |||||||||| ||||||||||||
Sbjct: 127913 ccctcctctcggtcgccgctgcc 127935



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>dbj|AP005843.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBb0024C16
          Length = 137779

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 39    ccctcctctccgtcgccgctgcc 61
             |||||||||| ||||||||||||
Sbjct: 84325 ccctcctctcggtcgccgctgcc 84347



 Score = 38.2 bits (19), Expect = 4.5
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 39    ccctcctctccgtcgccgctgcc 61
             |||||||||| ||||||||||||
Sbjct: 73552 ccctcctctcggtcgccgctgcc 73574



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>dbj|AK068575.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013156N24,
          full insert sequence
          Length = 2050

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 39 ccctcctctccgtcgccgc 57
          |||||||||||||||||||
Sbjct: 61 ccctcctctccgtcgccgc 79



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>gb|AC016968.24| Homo sapiens 3 BAC RP11-59J16 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 152586

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 10     cccaccctggaggccagcg 28
              |||||||||||||||||||
Sbjct: 139469 cccaccctggaggccagcg 139487



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>gb|BT021037.1| Bos taurus eukaryotic translation elongation factor 1 beta 2
           (EEF1B2), mRNA, complete cds
          Length = 821

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 15  cctggaggccagcggggct 33
           |||||||||||||||||||
Sbjct: 140 cctggaggccagcggggct 122



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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 38.2 bits (19), Expect = 4.5
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 39       ccctcctctccgtcgccgc 57
                |||||||||||||||||||
Sbjct: 22787302 ccctcctctccgtcgccgc 22787320


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 643,084
Number of Sequences: 3902068
Number of extensions: 643084
Number of successful extensions: 51044
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 50729
Number of HSP's gapped (non-prelim): 315
length of query: 102
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 81
effective length of database: 17,151,101,840
effective search space: 1389239249040
effective search space used: 1389239249040
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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