Clone Name
bart50f03
Clone Library Name
barley_pub
>E133_ARATH (Q9ZU91) Putative glucan endo-1,3-beta-glucosidase 3 precursor (EC|
3.2.1.39) ((1->3)-beta-glucan endohydrolase)
((1->3)-beta-glucanase) (Beta-1,3-endoglucanase)
(Beta-1,3-glucanase)
Length = 501
Score = 84.3 bits (207), Expect = 1e-16
Identities = 37/86 (43%), Positives = 53/86 (61%), Gaps = 1/86 (1%)
Frame = +2
Query: 194 YCVCKSDANPVAMQKAIDYACGKG-ADCTQITSNGPCFQPISVVAHCSYACNSYYQKNAG 370
+C+ K + +Q A+D+ACG G DC+ + C++P VVAH +YA N+YYQK
Sbjct: 360 FCIAKEKVDRKMLQAALDWACGPGKVDCSALMQGESCYEPDDVVAHSTYAFNAYYQKMGK 419
Query: 371 MGATCDFMGVATLTGADPSAGSLQYP 448
+CDF GVAT+T DPS G+ +P
Sbjct: 420 ASGSCDFKGVATVTTTDPSRGTCVFP 445
>E131_ARATH (O65399) Putative glucan endo-1,3-beta-glucosidase 1 precursor (EC|
3.2.1.39) ((1->3)-beta-glucan endohydrolase)
((1->3)-beta-glucanase) (Beta-1,3-endoglucanase)
(Beta-1,3-glucanase)
Length = 402
Score = 83.2 bits (204), Expect = 3e-16
Identities = 37/89 (41%), Positives = 53/89 (59%), Gaps = 1/89 (1%)
Frame = +2
Query: 194 YCVCKSDANPVAMQKAIDYACGKG-ADCTQITSNGPCFQPISVVAHCSYACNSYYQKNAG 370
YC+ + +Q A+D+ACG G ++C++I C+QP +V H S+A NSYYQK
Sbjct: 272 YCIAMDGVDAKTLQAALDWACGPGRSNCSEIQPGESCYQPNNVKGHASFAFNSYYQKEGR 331
Query: 371 MGATCDFMGVATLTGADPSAGSLQYPAQR 457
+CDF GVA +T DPS GS +P +
Sbjct: 332 ASGSCDFKGVAMITTTDPSHGSCIFPGSK 360
>E13B_WHEAT (P52409) Glucan endo-1,3-beta-glucosidase precursor (EC 3.2.1.39)|
((1->3)-beta-glucan endohydrolase)
((1->3)-beta-glucanase) (Beta-1,3-endoglucanase)
Length = 461
Score = 82.0 bits (201), Expect = 7e-16
Identities = 39/84 (46%), Positives = 47/84 (55%)
Frame = +2
Query: 194 YCVCKSDANPVAMQKAIDYACGKGADCTQITSNGPCFQPISVVAHCSYACNSYYQKNAGM 373
+CV K AN +Q I+YACG DC I S G CF P S+ AH SY N+YYQ N
Sbjct: 377 WCVAKDGANGTDLQNNINYACGF-VDCKPIQSGGACFSPNSLQAHASYVMNAYYQANGHT 435
Query: 374 GATCDFMGVATLTGADPSAGSLQY 445
CDF G +T +DPS G +Y
Sbjct: 436 DLACDFKGTGIVTSSDPSYGGCKY 459
>E134_ARATH (Q94CD8) Putative glucan endo-1,3-beta-glucosidase 4 precursor (EC|
3.2.1.39) ((1->3)-beta-glucan endohydrolase)
((1->3)-beta-glucanase) (Beta-1,3-endoglucanase)
(Beta-1,3-glucanase)
Length = 505
Score = 77.8 bits (190), Expect = 1e-14
Identities = 37/87 (42%), Positives = 51/87 (58%), Gaps = 1/87 (1%)
Frame = +2
Query: 188 AMYCVCKSDANPVAMQKAIDYACGKG-ADCTQITSNGPCFQPISVVAHCSYACNSYYQKN 364
+M+CV K+DA+ + +++ACG+G A+C I PC+ P V +H S+A N YYQK
Sbjct: 360 SMFCVAKADADDDKLVDGLNWACGQGRANCAAIQPGQPCYLPNDVKSHASFAFNDYYQKM 419
Query: 365 AGMGATCDFMGVATLTGADPSAGSLQY 445
G TCDF G A T DPS + Y
Sbjct: 420 KSAGGTCDFDGTAITTTRDPSYRTCAY 446
>EA6_ARATH (Q06915) Probable glucan endo-1,3-beta-glucosidase A6 precursor (EC|
3.2.1.39) ((1->3)-beta-glucan endohydrolase)
((1->3)-beta-glucanase) (Beta-1,3-endoglucanase)
(Anther-specific protein A6)
Length = 478
Score = 52.8 bits (125), Expect = 4e-07
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Frame = +2
Query: 191 MYCVCKSDANPVAMQKAIDYACGKG-ADCTQITSNGPCFQPISVVAHCSYACNSYYQKNA 367
++CV AN +++ + AC + C + C++P+S+ H SYA NSY+ +
Sbjct: 388 VWCVPVEGANETELEETLRMACAQSNTTCAALAPGRECYEPVSIYWHASYALNSYWAQFR 447
Query: 368 GMGATCDFMGVATLTGADPSAGSLQYPA 451
C F G+A T +P ++P+
Sbjct: 448 NQSIQCFFNGLAHETTTNPGNDRCKFPS 475
>E135_ARATH (Q9M088) Putative glucan endo-1,3-beta-glucosidase 5 precursor (EC|
3.2.1.39) ((1->3)-beta-glucan endohydrolase)
((1->3)-beta-glucanase) (Beta-1,3-endoglucanase)
(Beta-1,3-glucanase)
Length = 484
Score = 50.4 bits (119), Expect = 2e-06
Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
Frame = +2
Query: 194 YCVCKSDANPVAMQ--KAIDYACGKGADCTQITSNGPCFQPISVVAHCSYACNSYYQKNA 367
+C+ +AN Q ++ YAC ADCT + C +++ + SYA NSYYQ +
Sbjct: 365 WCILAPNANLQDPQLGPSVSYACDH-ADCTSLGYGSSCGN-LNLAQNVSYAFNSYYQVSN 422
Query: 368 GMGATCDFMGVATLTGADPSAGSLQY 445
+ + C F G++ ++ DPS GS ++
Sbjct: 423 QLDSACKFPGLSIVSTRDPSVGSCKF 448
>E136_ARATH (Q93Z08) Putative glucan endo-1,3-beta-glucosidase 6 precursor (EC|
3.2.1.39) ((1->3)-beta-glucan endohydrolase)
((1->3)-beta-glucanase) (Beta-1,3-endoglucanase)
(Beta-1,3-glucanase)
Length = 477
Score = 49.3 bits (116), Expect = 5e-06
Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
Frame = +2
Query: 194 YCVCKSDA--NPVAMQKAIDYACGKGADCTQITSNGPCFQPISVVAHCSYACNSYYQKNA 367
+CV K + + + A+ YAC G DCT + C + + SYA NSYYQ
Sbjct: 362 WCVMKPNVRLDDPQVAPAVSYACSLG-DCTSLGVGTSCAN-LDGKQNISYAFNSYYQIQD 419
Query: 368 GMGATCDFMGVATLTGADPSAGSLQYP 448
+ C F ++ +T DPS G+ ++P
Sbjct: 420 QLDTACKFPNISEVTKTDPSTGTCRFP 446
>EPD1_CANMA (P56092) Protein EPD1 precursor (Essential for pseudohyphal|
development 1)
Length = 549
Score = 42.4 bits (98), Expect = 6e-04
Identities = 28/103 (27%), Positives = 43/103 (41%), Gaps = 7/103 (6%)
Frame = +2
Query: 182 SDAMYCVCKSDANPVAMQKAIDYACGKGADCTQITSNGP-----CFQPISVVAHCSYACN 346
S ++ CV + + DY C K DC+ I +N + P S+ N
Sbjct: 373 SSSLKCVVADNVSTDDYSDLFDYVCAK-IDCSGINANATTGDYGAYSPCGAKDKLSFVLN 431
Query: 347 SYYQKNAGMGATCDFMGVATLTGADPSAGSLQY--PAQRSGVG 469
YY++ + CDF G A+L A ++ Y A SG+G
Sbjct: 432 LYYEEQNESKSACDFSGSASLQSASTASSCAAYLSSAGVSGLG 474
>PHR2_CANAL (O13318) pH-responsive protein 2 precursor (pH-regulated protein 2)|
Length = 546
Score = 40.4 bits (93), Expect = 0.002
Identities = 29/103 (28%), Positives = 42/103 (40%), Gaps = 7/103 (6%)
Frame = +2
Query: 182 SDAMYCVCKSDANPVAMQKAIDYACGKGADCTQITSNGP-----CFQPISVVAHCSYACN 346
S ++ CV + Y C K DC I +NG + P S+ N
Sbjct: 375 SASLKCVVDDKVDSDDYSDLFSYICAK-IDCDGINANGTTGEYGAYSPCHSKDKLSFVMN 433
Query: 347 SYYQKNAGMGATCDFMGVATLTGADPSAGSLQY--PAQRSGVG 469
YY++N + CDF G A+L A ++ Y A SG+G
Sbjct: 434 LYYEQNKESKSACDFGGSASLQSAKTASSCSAYLSSAGSSGLG 476
>GAS1_YEAST (P22146) Glycolipid-anchored surface protein 1 precursor|
(Glycoprotein GP115)
Length = 559
Score = 38.9 bits (89), Expect = 0.007
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 5/83 (6%)
Frame = +2
Query: 197 CVCKSDANPVAMQKAIDYACGKGADCTQITSNGPC-----FQPISVVAHCSYACNSYYQK 361
CV D + + ++ C + DC+ I++NG + + S+ N YY+K
Sbjct: 379 CVVSDDVDSDDYETLFNWICNE-VDCSGISANGTAGKYGAYSFCTPKEQLSFVMNLYYEK 437
Query: 362 NAGMGATCDFMGVATLTGADPSA 430
+ G + C F G ATL A A
Sbjct: 438 SGGSKSDCSFSGSATLQTATTQA 460
>PHR1_CANAL (P43076) pH-responsive protein 1 precursor (pH-regulated protein 1)|
Length = 548
Score = 34.7 bits (78), Expect = 0.13
Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 6/91 (6%)
Frame = +2
Query: 182 SDAMYCVCKSDANPVAMQKAIDYACGKGADCTQITSNGPCFQPISVVAHCS------YAC 343
S ++ CV D + CG DC+ I+++G + V + CS Y
Sbjct: 385 SKSLECVVADDVDKEDYGDLFGQVCGY-IDCSAISADGSKGE-YGVASFCSDKDRLSYVL 442
Query: 344 NSYYQKNAGMGATCDFMGVATLTGADPSAGS 436
N YY + CDF G A++ ++GS
Sbjct: 443 NQYYLDQDKKSSACDFKGSASINSKASASGS 473
>YLM2_SCHPO (Q9P378) Hypothetical protein C19B12.02c precursor|
Length = 542
Score = 33.9 bits (76), Expect = 0.22
Identities = 23/86 (26%), Positives = 32/86 (37%), Gaps = 6/86 (6%)
Frame = +2
Query: 197 CVCKSDANPVAMQKAIDYACGKGADCTQITSNGPCFQPISVVAHCS------YACNSYYQ 358
CV D + Y C + C IT+NG ++C Y ++YY
Sbjct: 376 CVINDDVSSDDYSDLFSYVCNE-ISCDGITANGTYPGQYGSYSYCDAKQQLDYVLDAYYS 434
Query: 359 KNAGMGATCDFMGVATLTGADPSAGS 436
CDF G ATL A + G+
Sbjct: 435 AKGD----CDFSGSATLVSASSATGT 456
>KR108_HUMAN (P60410) Keratin-associated protein 10-8 (Keratin-associated|
protein 10.8) (High sulfur keratin-associated protein
10.8) (Keratin-associated protein 18-8)
(Keratin-associated protein 18.8)
Length = 259
Score = 32.7 bits (73), Expect = 0.48
Identities = 18/62 (29%), Positives = 27/62 (43%)
Frame = +2
Query: 200 VCKSDANPVAMQKAIDYACGKGADCTQITSNGPCFQPISVVAHCSYACNSYYQKNAGMGA 379
+C ++P Q + AC + C Q C +PI V CS A + QK++ A
Sbjct: 137 ICSGASSPCCQQSSCQSACCTFSPCQQACCVPICCKPICCVPVCSGASSLCCQKSSCQPA 196
Query: 380 TC 385
C
Sbjct: 197 CC 198
>EPD2_CANMA (O74137) Protein EPD2 precursor (Essential for pseudohyphal|
development 2)
Length = 549
Score = 32.3 bits (72), Expect = 0.63
Identities = 23/81 (28%), Positives = 29/81 (35%), Gaps = 5/81 (6%)
Frame = +2
Query: 182 SDAMYCVCKSDANPVAMQKAIDYACGKGADCTQITSNGPC-----FQPISVVAHCSYACN 346
S + CV D + CG DC I++NG F S SY N
Sbjct: 385 SQSFNCVVADDVDAEDYSTLFGEVCGY-IDCGDISANGNTGEYGGFSFCSDKDRLSYVLN 443
Query: 347 SYYQKNAGMGATCDFMGVATL 409
YY CDF G A++
Sbjct: 444 QYYHDQNERADACDFAGSASI 464
>FRAS1_HUMAN (Q86XX4) Extracellular matrix protein FRAS1 precursor|
Length = 4007
Score = 30.4 bits (67), Expect = 2.4
Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
Frame = +2
Query: 197 CVCKSDANPVAMQKAIDYACGKGADCTQITSNGPCFQP-ISVVAHCSYACNSYYQKNAGM 373
C+C Q + CGKG ++ +G C + +S CSY YQ
Sbjct: 242 CICDRGEVRCHKQACLPLRCGKGQ--SRARRHGQCCEECVSPAGSCSYDGVVRYQDEMWK 299
Query: 374 GATCDF 391
G+ C+F
Sbjct: 300 GSACEF 305
>NPC1_HUMAN (O15118) Niemann-Pick C1 protein precursor|
Length = 1278
Score = 29.6 bits (65), Expect = 4.1
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +2
Query: 182 SDAMYCVCKSDANPVAMQKAIDYACGKGADCTQITS 289
++AMY C+ P + KA+ CGK AD T+
Sbjct: 153 ANAMYNACRDVEAPSSNDKALGLLCGKDADACNATN 188
>DLDH_TRYBB (Q04933) Dihydrolipoyl dehydrogenase (EC 1.8.1.4) (Dihydrolipoamide|
dehydrogenase)
Length = 479
Score = 29.3 bits (64), Expect = 5.3
Identities = 22/78 (28%), Positives = 29/78 (37%), Gaps = 7/78 (8%)
Frame = +1
Query: 10 TPLHSLPRHADXXXXXXXXXATSALTSAAREELELHPAACCNGGSSGPHALARHVRR--- 180
T + PR A AL +E+ + NG ++G AL V +
Sbjct: 210 TVVEFAPRCAPTLDSDVTDALVGALKRNGEDEVPMTGIEGVNGTNNGSIALTLEVEQAGG 269
Query: 181 ----LRCDVLRVQVGREP 222
L CD L V VGR P
Sbjct: 270 QAETLHCDALLVSVGRRP 287
>KR105_HUMAN (P60370) Keratin-associated protein 10-5 (Keratin-associated|
protein 10.5) (High sulfur keratin-associated protein
10.5) (Keratin-associated protein 18-5)
(Keratin-associated protein 18.5)
Length = 271
Score = 29.3 bits (64), Expect = 5.3
Identities = 17/66 (25%), Positives = 26/66 (39%), Gaps = 5/66 (7%)
Frame = +2
Query: 203 CKSDANPVAMQKAIDYACGKGADCTQ-----ITSNGPCFQPISVVAHCSYACNSYYQKNA 367
C D++ + C + C Q + CF+PI V CS A S Q+++
Sbjct: 145 CSEDSSSCCQHSSCQPTCCTSSPCQQSCYVPVCCKPVCFKPICCVPVCSGASTSCCQQSS 204
Query: 368 GMGATC 385
A C
Sbjct: 205 CQPACC 210
>VANG2_MOUSE (Q91ZD4) Vang-like protein 2 (Van Gogh-like protein 2)|
(Loop-tail-associated protein) (Loop-tail protein 1)
Length = 521
Score = 29.3 bits (64), Expect = 5.3
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = -2
Query: 163 QEHEDQRSRHCSKQRDGAR 107
++H D+R RH SK RDG+R
Sbjct: 21 RKHRDRRDRHRSKSRDGSR 39
>KR104_HUMAN (P60372) Keratin-associated protein 10-4 (Keratin-associated|
protein 10.4) (High sulfur keratin-associated protein
10.4) (Keratin-associated protein 18-4)
(Keratin-associated protein 18.4)
Length = 401
Score = 28.9 bits (63), Expect = 6.9
Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 5/67 (7%)
Frame = +2
Query: 200 VCKSDANPVAMQKAIDYACGKGADCTQ-----ITSNGPCFQPISVVAHCSYACNSYYQKN 364
VC D++ Q + AC + C Q + C +P+ V CS A + Q++
Sbjct: 242 VCSEDSSSCCQQSSCQPACCTSSPCQQACCVPVCCKPVCCKPVGSVPICSGASSLCCQQS 301
Query: 365 AGMGATC 385
+ A C
Sbjct: 302 SCQPACC 308
>HXD1_HUMAN (Q9GZZ0) Homeobox protein Hox-D1|
Length = 328
Score = 28.9 bits (63), Expect = 6.9
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = +2
Query: 203 CKSDANPVAMQKAIDYACGKGA--DCTQITSNGPCFQPISVVAHCS 334
C+SDA PVA+Q A G GA C + + P P + A S
Sbjct: 28 CRSDARPVALQPAFPLGNGDGAFVSCLPLAAARPSPSPPAAPARPS 73
>ATM_GIBZE (Q4IB89) Serine/threonine-protein kinase TEL1 (EC 2.7.11.1)|
(DNA-damage checkpoint kinase TEL1) (Telomere length
regulation protein 1) (ATM homolog)
Length = 2813
Score = 28.9 bits (63), Expect = 6.9
Identities = 18/56 (32%), Positives = 31/56 (55%)
Frame = -3
Query: 222 GFASDLHTQYIASEPANMASKSMRTRGAAIAASSGMELELFSRRRGQSTSSWQAKR 55
GF D+ QY+ + A++++ S+ A+ SS +SR G+ST S Q++R
Sbjct: 169 GFFLDV-AQYLLPDEADISTLSLARASPALTRSSPAPGSGYSRSGGRSTPSTQSQR 223
>VANG2_HUMAN (Q9ULK5) Vang-like protein 2 (Van Gogh-like protein 2) (Strabismus|
1) (Loop-tail protein 1 homolog)
Length = 521
Score = 28.9 bits (63), Expect = 6.9
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -2
Query: 163 QEHEDQRSRHCSKQRDGAR 107
++H D+R RH SK RDG R
Sbjct: 21 RKHRDRRDRHRSKSRDGGR 39
Database: uniprot_sprot.fasta
Posted date: May 25, 2006 5:36 PM
Number of letters in database: 80,573,946
Number of sequences in database: 219,361
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,785,429
Number of Sequences: 219361
Number of extensions: 940135
Number of successful extensions: 3724
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 3535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3719
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3072927439
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)