ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bart50f02 |
|---|---|
| Clone Library Name | barley_pub |
>CO410_WHEAT (P46524) Dehydrin COR410 (Cold-induced COR410 protein)| Length = 262 Score = 65.1 bits (157), Expect = 4e-11 Identities = 42/92 (45%), Positives = 43/92 (46%), Gaps = 5/92 (5%) Frame = +1 Query: 100 MEDERSTQSYQGAEA-DQVEVTDRXXXXXXXXXXXXXXXXXXXXXXVTGMXXXXXXX--- 267 MEDERSTQSYQG EA +QVEVTDR VTGM Sbjct: 1 MEDERSTQSYQGGEAAEQVEVTDRGLLGNLLGKKKAEEDKEKEEELVTGMEKVSVEEPEV 60 Query: 268 -XXXXXDGEKKETLFSKLHRXXXXXXXXXDEE 360 DGEKKETLFSKLHR DEE Sbjct: 61 KKEEHEDGEKKETLFSKLHRSSSSSSSSSDEE 92
>DIAP2_MOUSE (O70566) Protein diaphanous homolog 2 (Diaphanous-related formin-2)| (DRF2) (mDia3) Length = 1098 Score = 31.2 bits (69), Expect = 0.65 Identities = 12/24 (50%), Positives = 13/24 (54%) Frame = -1 Query: 172 GPCPSPPPDRPQLPGMTGCSSHPP 101 GPCP PPP P P + G PP Sbjct: 556 GPCPPPPPPPPPPPPLPGVVPPPP 579
>DIAP1_HUMAN (O60610) Protein diaphanous homolog 1 (Diaphanous-related formin-1)| (DRF1) Length = 1248 Score = 30.4 bits (67), Expect = 1.1 Identities = 13/23 (56%), Positives = 13/23 (56%) Frame = -1 Query: 169 PCPSPPPDRPQLPGMTGCSSHPP 101 P P PPP P LPG T S PP Sbjct: 601 PPPPPPPPPPPLPGGTAISPPPP 623
>APG_ARATH (P40602) Anter-specific proline-rich protein APG precursor| Length = 534 Score = 28.9 bits (63), Expect = 3.2 Identities = 13/27 (48%), Positives = 14/27 (51%), Gaps = 4/27 (14%) Frame = -1 Query: 169 PCPSPPPD----RPQLPGMTGCSSHPP 101 PCPSPPP P P + C S PP Sbjct: 87 PCPSPPPKPQPKPPPAPSPSPCPSPPP 113
>RDRP_IBDVA (P12918) RNA-directed RNA polymerase (EC 2.7.7.48) (RDRP) (Protein| VP1) Length = 878 Score = 28.9 bits (63), Expect = 3.2 Identities = 12/24 (50%), Positives = 18/24 (75%), Gaps = 2/24 (8%) Frame = -2 Query: 72 TRGS*RKQRIS--KDYWFLACGFL 7 T+GS +K+ +S DYW+L+CG L Sbjct: 294 TKGSNKKKLLSMLSDYWYLSCGLL 317
>RDRP_IBDV (Q9Q6Q5) RNA-directed RNA polymerase (EC 2.7.7.48) (RDRP) (Protein| VP1) Length = 881 Score = 28.9 bits (63), Expect = 3.2 Identities = 12/24 (50%), Positives = 18/24 (75%), Gaps = 2/24 (8%) Frame = -2 Query: 72 TRGS*RKQRIS--KDYWFLACGFL 7 T+GS +K+ +S DYW+L+CG L Sbjct: 295 TKGSNKKKLLSMLSDYWYLSCGLL 318
>YP85_CAEEL (Q09442) Putative RNA-binding protein C08B11.5| Length = 388 Score = 28.5 bits (62), Expect = 4.2 Identities = 15/27 (55%), Positives = 15/27 (55%), Gaps = 1/27 (3%) Frame = -1 Query: 169 PCPSPPPDR-PQLPGMTGCSSHPP*SR 92 P P PPP R P PGM G PP SR Sbjct: 298 PPPPPPPGRTPGPPGMPGMPPPPPPSR 324
>WT1_RAT (P49952) Wilms' tumor protein homolog| Length = 448 Score = 28.1 bits (61), Expect = 5.5 Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 9/51 (17%) Frame = -1 Query: 187 GGCRVGPCPSPPPDR---------PQLPGMTGCSSHPP*SRSVGAATDSWE 62 G CR GP PPP + P P + C P R+ G +T +++ Sbjct: 104 GACRYGPFGPPPPSQASSGQARMFPNAPYLPSCLESQPSIRNQGYSTVTFD 154
>MP2K1_RABIT (P29678) Dual specificity mitogen-activated protein kinase kinase 1| (EC 2.7.12.2) (MAP kinase kinase 1) (MAPKK 1) (ERK activator kinase 1) (MAPK/ERK kinase 1) (MEK1) Length = 392 Score = 28.1 bits (61), Expect = 5.5 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 6/46 (13%) Frame = -1 Query: 175 VGPCPSPPPDRPQLPGMTGC------SSHPP*SRSVGAATDSWELE 56 VG P PPPD +L M GC + PP R+ G S+ ++ Sbjct: 257 VGRYPIPPPDAKELELMFGCQVEGDAAETPPRPRTPGRPLSSYGMD 302
>MP2K1_HUMAN (Q02750) Dual specificity mitogen-activated protein kinase kinase 1| (EC 2.7.12.2) (MAP kinase kinase 1) (MAPKK 1) (ERK activator kinase 1) (MAPK/ERK kinase 1) (MEK1) Length = 392 Score = 28.1 bits (61), Expect = 5.5 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 6/46 (13%) Frame = -1 Query: 175 VGPCPSPPPDRPQLPGMTGC------SSHPP*SRSVGAATDSWELE 56 VG P PPPD +L M GC + PP R+ G S+ ++ Sbjct: 257 VGRYPIPPPDAKELELMFGCQVEGDAAETPPRPRTPGRPLSSYGMD 302
>KLF13_MOUSE (Q9JJZ6) Krueppel-like factor 13 (Transcription factor BTEB3)| (Basic transcription element-binding protein 3) (BTE-binding protein 3) (RANTES factor of late activated T-lymphocytes 1) (RFLAT-1) (Erythroid transcription factor FKLF-2) Length = 289 Score = 28.1 bits (61), Expect = 5.5 Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 2/29 (6%) Frame = -1 Query: 181 CRVGPCPSPPPDRPQ--LPGMTGCSSHPP 101 CR+ P P PP P+ PG G + PP Sbjct: 95 CRLPPAPPAPPPGPEPASPGQAGAPAAPP 123
>WT1_MOUSE (P22561) Wilms' tumor protein homolog| Length = 449 Score = 28.1 bits (61), Expect = 5.5 Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 9/51 (17%) Frame = -1 Query: 187 GGCRVGPCPSPPPDR---------PQLPGMTGCSSHPP*SRSVGAATDSWE 62 G CR GP PPP + P P + C P R+ G +T +++ Sbjct: 105 GACRYGPFGPPPPSQASSGQARMFPNAPYLPSCLESQPTIRNQGYSTVTFD 155
>WT1_HUMAN (P19544) Wilms' tumor protein (WT33)| Length = 449 Score = 28.1 bits (61), Expect = 5.5 Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 9/51 (17%) Frame = -1 Query: 187 GGCRVGPCPSPPPDR---------PQLPGMTGCSSHPP*SRSVGAATDSWE 62 G CR GP PPP + P P + C P R+ G +T +++ Sbjct: 105 GACRYGPFGPPPPSQASSGQARMFPNAPYLPSCLESQPAIRNQGYSTVTFD 155
>SEPA_EMENI (P78621) Cytokinesis protein sepA (FH1/2 protein) (Forced expression| inhibition of growth A) Length = 1790 Score = 28.1 bits (61), Expect = 5.5 Identities = 10/21 (47%), Positives = 13/21 (61%) Frame = -1 Query: 163 PSPPPDRPQLPGMTGCSSHPP 101 P PPP P PG++G + PP Sbjct: 1017 PPPPPPPPAHPGLSGAAPPPP 1037
>SODE_MOUSE (O09164) Extracellular superoxide dismutase [Cu-Zn] precursor (EC| 1.15.1.1) (EC-SOD) Length = 251 Score = 28.1 bits (61), Expect = 5.5 Identities = 10/19 (52%), Positives = 14/19 (73%) Frame = -1 Query: 181 CRVGPCPSPPPDRPQLPGM 125 CRV P + PPD+PQ+ G+ Sbjct: 77 CRVQPSATLPPDQPQITGL 95
>FOXGB_RAT (Q00939) Forkhead box protein G1B (Forkhead-related protein FKHL1)| (Transcription factor BF-1) (Brain factor 1) (BF1) Length = 480 Score = 27.7 bits (60), Expect = 7.2 Identities = 13/33 (39%), Positives = 15/33 (45%) Frame = -1 Query: 169 PCPSPPPDRPQLPGMTGCSSHPP*SRSVGAATD 71 P P PPP PQ + PP +R AA D Sbjct: 60 PAPQPPPPPPQQQQQPPPAPQPPQARGAPAADD 92
>ATN1_RAT (P54258) Atrophin-1 (Dentatorubral-pallidoluysian atrophy protein)| Length = 1183 Score = 27.7 bits (60), Expect = 7.2 Identities = 18/38 (47%), Positives = 18/38 (47%), Gaps = 3/38 (7%) Frame = -1 Query: 172 GPCPSPPPDRPQL-PGMT--GCSSHPP*SRSVGAATDS 68 GP P PP PQL PG G S PP GAA S Sbjct: 207 GPPPGAPPPHPQLYPGSAGGGVLSGPPMGPKGGAAASS 244
>MARH4_HUMAN (Q9P2E8) Membrane-associated RING finger protein 4| (Membrane-associated RING-CH protein IV) (MARCH-IV) (RING finger protein 174) Length = 410 Score = 27.7 bits (60), Expect = 7.2 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 6/54 (11%) Frame = -1 Query: 175 VGPCPSPPPDRPQLPGMT------GCSSHPP*SRSVGAATDSWELEKTADQQRL 32 VG P P P P LP + G ++ PP S A++D + EKT D+ L Sbjct: 97 VGREPPPVPPPPPLPPSSVEDDWGGPATEPPASLLSSASSDDFCKEKTEDRYSL 150
>C1QA_PIG (Q69DL0) Complement C1q subcomponent subunit A precursor| Length = 247 Score = 27.7 bits (60), Expect = 7.2 Identities = 11/22 (50%), Positives = 13/22 (59%) Frame = -1 Query: 169 PCPSPPPDRPQLPGMTGCSSHP 104 P PS PP P LPG+ G +P Sbjct: 87 PGPSGPPGLPGLPGLKGIKGNP 108
>GSCR1_HUMAN (Q9NZM4) Glioma tumor suppressor candidate region gene 1 protein| Length = 1509 Score = 27.3 bits (59), Expect = 9.4 Identities = 11/23 (47%), Positives = 11/23 (47%) Frame = -1 Query: 169 PCPSPPPDRPQLPGMTGCSSHPP 101 P P PPP P M G HPP Sbjct: 1294 PPPRPPPPPPPTGQMNGTVDHPP 1316
>ZCHC8_XENLA (Q6DD45) Zinc finger CCHC domain-containing protein 8| Length = 743 Score = 27.3 bits (59), Expect = 9.4 Identities = 17/47 (36%), Positives = 22/47 (46%) Frame = -1 Query: 169 PCPSPPPDRPQLPGMTGCSSHPP*SRSVGAATDSWELEKTADQQRLL 29 P P+PPP P T P V D+W LE+ ++QRLL Sbjct: 488 PTPTPPPLPKGTPPPTPNRDSPKVPPQV-LDEDTWTLEELEEKQRLL 533
>ENA_DROME (Q8T4F7) Protein enabled| Length = 834 Score = 27.3 bits (59), Expect = 9.4 Identities = 12/29 (41%), Positives = 13/29 (44%) Frame = -1 Query: 187 GGCRVGPCPSPPPDRPQLPGMTGCSSHPP 101 GG P P+PPP P G G PP Sbjct: 548 GGPGGPPAPAPPPPPPSFGGAAGGGPPPP 576
>TAMO_DROME (Q9W1A4) Protein tamozhennic| Length = 797 Score = 27.3 bits (59), Expect = 9.4 Identities = 9/14 (64%), Positives = 11/14 (78%) Frame = -1 Query: 169 PCPSPPPDRPQLPG 128 P P+PPP +P LPG Sbjct: 272 PYPAPPPQQPHLPG 285
>RDRP_BSNV (Q8AZL8) RNA-directed RNA polymerase (EC 2.7.7.48) (RDRP) (Protein| VP1) Length = 867 Score = 27.3 bits (59), Expect = 9.4 Identities = 8/15 (53%), Positives = 13/15 (86%) Frame = -2 Query: 51 QRISKDYWFLACGFL 7 Q++ +DYW+L+CG L Sbjct: 292 QKLLQDYWYLSCGLL 306
>MED28_RAT (P68943) Mediator of RNA polymerase II transcription subunit 28| (Mediator complex subunit 28) (Med23 homolog) Length = 178 Score = 27.3 bits (59), Expect = 9.4 Identities = 16/46 (34%), Positives = 19/46 (41%) Frame = -1 Query: 187 GGCRVGPCPSPPPDRPQLPGMTGCSSHPP*SRSVGAATDSWELEKT 50 GG G P PPP P LPG P + +T ELE + Sbjct: 6 GGMFAGQPPGPPPPPPGLPGQASLLQAAPGAPRPSNSTLVDELESS 51
>MED28_MOUSE (Q920D3) Mediator of RNA polymerase II transcription subunit 28| (Mediator complex subunit 28) Length = 178 Score = 27.3 bits (59), Expect = 9.4 Identities = 16/46 (34%), Positives = 19/46 (41%) Frame = -1 Query: 187 GGCRVGPCPSPPPDRPQLPGMTGCSSHPP*SRSVGAATDSWELEKT 50 GG G P PPP P LPG P + +T ELE + Sbjct: 6 GGMFTGQPPGPPPPPPGLPGQASLLQAAPGAPRPSNSTLVDELESS 51
>SODE_RAT (Q08420) Extracellular superoxide dismutase [Cu-Zn] precursor (EC| 1.15.1.1) (EC-SOD) (Superoxide dismutase B) Length = 244 Score = 27.3 bits (59), Expect = 9.4 Identities = 10/19 (52%), Positives = 13/19 (68%) Frame = -1 Query: 181 CRVGPCPSPPPDRPQLPGM 125 CRV P PPD+PQ+ G+ Sbjct: 70 CRVQPSAMLPPDQPQITGL 88
>DIAP2_HUMAN (O60879) Protein diaphanous homolog 2 (Diaphanous-related formin-2)| (DRF2) Length = 1101 Score = 27.3 bits (59), Expect = 9.4 Identities = 13/24 (54%), Positives = 13/24 (54%) Frame = -1 Query: 172 GPCPSPPPDRPQLPGMTGCSSHPP 101 G P PPP P LPGM G PP Sbjct: 573 GGAPLPPPP-PPLPGMMGIPPPPP 595 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 34,470,875 Number of Sequences: 219361 Number of extensions: 504607 Number of successful extensions: 2913 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 2251 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2835 length of database: 80,573,946 effective HSP length: 95 effective length of database: 59,734,651 effective search space used: 1433631624 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
