ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bart50f01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SBP_ARATH (O23264) Putative selenium-binding protein 145 4e-35
2SBP2_MOUSE (Q63836) Selenium-binding protein 2 (56 kDa acetamino... 128 6e-30
3SBP1_MOUSE (P17563) Selenium-binding protein 1 (56 kDa selenium-... 128 6e-30
4SBP1_HUMAN (Q13228) Selenium-binding protein 1 123 3e-28
5SBP_CAEEL (Q21950) Putative selenium-binding protein 40 0.002
6MDR11_ARATH (Q9LJX0) Multidrug resistance protein 11 (P-glycopro... 30 3.9
7SM34_LYTPI (Q05904) 34 kDa spicule matrix protein precursor (LSM34) 30 3.9
8CO4A1_CAEEL (P17139) Collagen alpha-1(IV) chain precursor 29 5.1
9PODXL_HUMAN (O00592) Podocalyxin-like protein 1 precursor 26 6.6
10COBA2_MOUSE (Q64739) Collagen alpha-2(XI) chain precursor 29 6.7
11CINA_GLOVI (Q7NHU4) CinA-like protein 29 6.7
12CO4A5_HUMAN (P29400) Collagen alpha-5(IV) chain precursor 29 6.7
13DOT1L_HUMAN (Q8TEK3) Histone-lysine N-methyltransferase, H3 lysi... 28 8.7
14SCG1_RAT (O35314) Secretogranin-1 precursor (Secretogranin-I) (S... 28 8.7
15CO4A4_BOVIN (Q29442) Collagen alpha-4(IV) chain (Fragment) 28 8.7

>SBP_ARATH (O23264) Putative selenium-binding protein|
          Length = 490

 Score =  145 bits (367), Expect = 4e-35
 Identities = 68/91 (74%), Positives = 75/91 (82%)
 Frame = +3

Query: 189 TPREAMEKGPREGLLYVTCVYNGTGIDKPDYLATVDVDPSSATYSQVIHRLPATHIGDEL 368
           TP  AM  GP E L+YVT VY GTGIDKPDYLATVDVDPSS +YS VIHRLP   +GDEL
Sbjct: 31  TPLAAMS-GPSEKLIYVTAVYTGTGIDKPDYLATVDVDPSSPSYSSVIHRLPMPFVGDEL 89

Query: 369 HHSGWNACSSCHGDPSTSRRFLILPSLLSGR 461
           HHSGWN+CSSCHGD S  RR+L+LPSL+SGR
Sbjct: 90  HHSGWNSCSSCHGDASVDRRYLVLPSLISGR 120



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>SBP2_MOUSE (Q63836) Selenium-binding protein 2 (56 kDa acetaminophen-binding|
           protein) (AP56)
          Length = 472

 Score =  128 bits (322), Expect = 6e-30
 Identities = 60/91 (65%), Positives = 69/91 (75%)
 Frame = +3

Query: 189 TPREAMEKGPREGLLYVTCVYNGTGIDKPDYLATVDVDPSSATYSQVIHRLPATHIGDEL 368
           TP EAM KGPRE ++Y+ C+Y  TG + PDYLATVDVDP S  YSQVIHRLP  ++ DEL
Sbjct: 14  TPLEAM-KGPREEIVYLPCIYRNTGTEAPDYLATVDVDPKSPQYSQVIHRLPMPYLKDEL 72

Query: 369 HHSGWNACSSCHGDPSTSRRFLILPSLLSGR 461
           HHSGWN CSSC GD + SR  LILP L+S R
Sbjct: 73  HHSGWNTCSSCFGDSTKSRNKLILPGLMSSR 103



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>SBP1_MOUSE (P17563) Selenium-binding protein 1 (56 kDa selenium-binding|
           protein) (SP56)
          Length = 472

 Score =  128 bits (322), Expect = 6e-30
 Identities = 60/91 (65%), Positives = 69/91 (75%)
 Frame = +3

Query: 189 TPREAMEKGPREGLLYVTCVYNGTGIDKPDYLATVDVDPSSATYSQVIHRLPATHIGDEL 368
           TP EAM KGPRE ++Y+ C+Y  TG + PDYLATVDVDP S  YSQVIHRLP  ++ DEL
Sbjct: 14  TPLEAM-KGPREEIVYLPCIYRNTGTEAPDYLATVDVDPKSPQYSQVIHRLPMPYLKDEL 72

Query: 369 HHSGWNACSSCHGDPSTSRRFLILPSLLSGR 461
           HHSGWN CSSC GD + SR  LILP L+S R
Sbjct: 73  HHSGWNTCSSCFGDSTKSRNKLILPGLISSR 103



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>SBP1_HUMAN (Q13228) Selenium-binding protein 1|
          Length = 472

 Score =  123 bits (308), Expect = 3e-28
 Identities = 58/91 (63%), Positives = 68/91 (74%)
 Frame = +3

Query: 189 TPREAMEKGPREGLLYVTCVYNGTGIDKPDYLATVDVDPSSATYSQVIHRLPATHIGDEL 368
           TP EAM KGPRE ++Y+ C+Y  TG + PDYLATVDVDP S  Y QVIHRLP  ++ DEL
Sbjct: 14  TPLEAM-KGPREEIVYLPCIYRNTGTEAPDYLATVDVDPKSPQYCQVIHRLPMPNLKDEL 72

Query: 369 HHSGWNACSSCHGDPSTSRRFLILPSLLSGR 461
           HHSGWN  SSC GD + SR  L+LPSL+S R
Sbjct: 73  HHSGWNTYSSCFGDSTKSRNKLVLPSLISSR 103



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>SBP_CAEEL (Q21950) Putative selenium-binding protein|
          Length = 576

 Score = 40.4 bits (93), Expect = 0.002
 Identities = 24/87 (27%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
 Frame = +3

Query: 204 MEKGPREGLLYVTCVYNGTGIDKPDYLATVDVDPSSATYSQVIHRLPATHIGDELHHSGW 383
           +E+   + L  + C  +  G ++ D +A VD+DP+S T+  ++  +  T  GDE     W
Sbjct: 83  VEEEQDDELFAIVCCPHSIGYER-DKIALVDLDPTSETFCTILSEVHLTSNGDEPGRMNW 141

Query: 384 NACSSCHGDPST-SRRFLILPSLLSGR 461
              +   G+ +   RR +I+P + SG+
Sbjct: 142 AKSAESLGEMNKFVRRNIIVPCMNSGK 168



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>MDR11_ARATH (Q9LJX0) Multidrug resistance protein 11 (P-glycoprotein 19)|
          Length = 1252

 Score = 29.6 bits (65), Expect = 3.9
 Identities = 18/39 (46%), Positives = 22/39 (56%)
 Frame = -2

Query: 344 REPVDHLGVRR*TGVDVHRSQVIRLVDSSAIIDAGDVEE 228
           +E +D + V R T V  HR   IR VDS A+I  G V E
Sbjct: 543 QEALDRVMVGRTTVVVAHRLCTIRNVDSIAVIQQGQVVE 581



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>SM34_LYTPI (Q05904) 34 kDa spicule matrix protein precursor (LSM34)|
          Length = 335

 Score = 29.6 bits (65), Expect = 3.9
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +2

Query: 281 PGYGGRRPQFSDVLPGDPQAPG 346
           PG+GGR+P F    PG  Q PG
Sbjct: 214 PGFGGRQPGFGGQQPGFGQQPG 235



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>CO4A1_CAEEL (P17139) Collagen alpha-1(IV) chain precursor|
          Length = 1759

 Score = 29.3 bits (64), Expect = 5.1
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = +2

Query: 269  QAGLPGYGGRRPQFSDVLPGDPQAPGHP 352
            Q GLPG  G R    D  PG+P   G P
Sbjct: 1058 QDGLPGLNGERGDNGDSYPGNPGLSGQP 1085



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>PODXL_HUMAN (O00592) Podocalyxin-like protein 1 precursor|
          Length = 528

 Score = 25.8 bits (55), Expect(2) = 6.6
 Identities = 11/44 (25%), Positives = 17/44 (38%)
 Frame = +3

Query: 306 SSATYSQVIHRLPATHIGDELHHSGWNACSSCHGDPSTSRRFLI 437
           SS T +   HR P T      H S W  C        + ++ ++
Sbjct: 286 SSPTAASTTHRYPKTPSPTVAHESNWAKCEDLETQTQSEKQLVL 329



 Score = 21.6 bits (44), Expect(2) = 6.6
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 229 SSTSPASIMALESTSRITWLRWTSTP 306
           SST+P+S   ++ TS  T LR  + P
Sbjct: 256 SSTAPSSQETVQPTSPATALRTPTLP 281



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>COBA2_MOUSE (Q64739) Collagen alpha-2(XI) chain precursor|
          Length = 1736

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 22/54 (40%), Positives = 22/54 (40%)
 Frame = +2

Query: 191 AEGGHGEGPARGAPLRHLRL*WHWNRQAGLPGYGGRRPQFSDVLPGDPQAPGHP 352
           A G HGE  ARG P              GLPG  G     SD LPG P   G P
Sbjct: 665 AIGPHGEKGARGKP--------------GLPGMPG-----SDGLPGHPGKEGPP 699



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>CINA_GLOVI (Q7NHU4) CinA-like protein|
          Length = 426

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -2

Query: 269 VDSSAIIDAGDVEEPLARALLHGLPRR 189
           VD   +ID G V EP+ARA+  G+  R
Sbjct: 319 VDEQRMIDHGAVSEPVARAMAEGVRNR 345



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>CO4A5_HUMAN (P29400) Collagen alpha-5(IV) chain precursor|
          Length = 1685

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 15/29 (51%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
 Frame = +2

Query: 269 QAGLPGYGGRRPQFSDV-LPGDPQAPGHP 352
           Q G PG  G   +  DV LPGDP  PG P
Sbjct: 661 QPGKPGLPGNPGRDGDVGLPGDPGLPGQP 689



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>DOT1L_HUMAN (Q8TEK3) Histone-lysine N-methyltransferase, H3 lysine-79 specific|
            (EC 2.1.1.43) (Histone H3-K79 methyltransferase)
            (H3-K79-HMTase) (DOT1-like protein)
          Length = 1739

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
 Frame = -2

Query: 236  VEEPLARALLHGLPRRGVPGALRRA---APGT 150
            +EEP A A L   PR+G PG+L  A   +PGT
Sbjct: 1279 LEEPSADAKLAAHPRKGFPGSLSGADGLSPGT 1310



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>SCG1_RAT (O35314) Secretogranin-1 precursor (Secretogranin-I) (SgI)|
           (Chromogranin B) (CgB) (Glucagonoma peptide) [Contains:
           GAWK peptide; CCB peptide]
          Length = 675

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 14/37 (37%), Positives = 16/37 (43%)
 Frame = +2

Query: 194 EGGHGEGPARGAPLRHLRL*WHWNRQAGLPGYGGRRP 304
           EG  GE  A     +      HW  Q+  P Y GRRP
Sbjct: 261 EGEEGEEGATSEVTKRRPRHHHWRSQSNKPSYEGRRP 297



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>CO4A4_BOVIN (Q29442) Collagen alpha-4(IV) chain (Fragment)|
          Length = 453

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 14/25 (56%), Positives = 15/25 (60%)
 Frame = +2

Query: 275 GLPGYGGRRPQFSDVLPGDPQAPGH 349
           G PG  GRR +  D LPG P  PGH
Sbjct: 172 GEPGLDGRRGE--DGLPGSPGPPGH 194


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,067,739
Number of Sequences: 219361
Number of extensions: 942589
Number of successful extensions: 3271
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 3004
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3256
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2968155324
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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